Fix warnings caused by newer python version

Author: eidens

api/server/swagger_server/controllers/refereed_preprint_details_controller.py

@@ -52,7 +52,7 @@ def papers_url(reviewed_by=None, query=None, page=None, per_page=None, sort_by=N
 
 @cache.memoize()  # memoize handles function parameters, .cached does not
 def papers_get(reviewed_by=None, query=None, published_in=None, page=None, per_page=None, sort_by=None, sort_order=None):  # noqa: E501
-    """Get paginated collections of refereed preprints, optionally filtered by reviewing service
+    r"""Get paginated collections of refereed preprints, optionally filtered by reviewing service
 
      # noqa: E501
 

neotools/test_txt2node.py

@@ -275,7 +275,7 @@ def assert_nodes_equal(self, expected: XMLNode, actual: XMLNode):
         super().assert_nodes_equal(expected, actual)
 
     def test_jats(self):
-        input = b'''<?xml version="1.0" encoding="UTF-8"?>
+        input = br'''<?xml version="1.0" encoding="UTF-8"?>
         <!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2d1 20170631//EN" "JATS-archivearticle1.dtd">
         <article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="article" dtd-version="1.2d1" specific-use="production" xml:lang="en">
             <front>

sdg/sdneo.py

@@ -34,7 +34,7 @@ def create_articles(self, doi_list: List[str]):
         def filter_existing_complete_articles(doi_list: List[str]):
             filtered_list = []
             for doi in doi_list:
-                if not re.match('^10.\d{4,9}/[-._;()/:A-Z0-9]+$', doi, flags=re.IGNORECASE):
+                if not re.match(r'^10.\d{4,9}/[-._;()/:A-Z0-9]+$', doi, flags=re.IGNORECASE):
                     logger.warning(f"{doi} is not a doi. Ignored.")
                 else:
                     results = self.db.query(SDARTICLE_LOADING_STATUS(params={'doi': doi}))  # 'complete' | 'partial' | 'absent'