From 73a29733eb00fad1ddac5e171147652b208a142b Mon Sep 17 00:00:00 2001 From: David Laehnemann <1379875+dlaehnemann@users.noreply.github.com> Date: Fri, 5 Dec 2025 11:11:43 +0100 Subject: [PATCH 1/3] fix: pin miniforge to working version `25.9.1` Basically, this is only until this problem's fix (which already seems to exist), is either patched and/or released in `conda-libmamba-solver`, probably via `conda` itself: https://github.com/conda/conda-libmamba-solver/issues/798 --- action.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/action.yml b/action.yml index 44ce152..c2d61c5 100644 --- a/action.yml +++ b/action.yml @@ -78,7 +78,7 @@ runs: with: channels: conda-forge,bioconda channel-priority: strict - miniforge-version: latest + miniforge-version: 25.9.1 # TODO: set back to "latest" once this issue in the conda-libmamba-solver is patched and/or released: https://github.com/conda/conda-libmamba-solver/issues/798 environment-file: .snakemake.environment.yaml activate-environment: snakemake From 611f340b51abb9ceaa125304f8e344df7031ef95 Mon Sep 17 00:00:00 2001 From: David Laehnemann <1379875+dlaehnemann@users.noreply.github.com> Date: Fri, 5 Dec 2025 11:29:20 +0100 Subject: [PATCH 2/3] fix: use complete existing version number, including the build number --- action.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/action.yml b/action.yml index c2d61c5..2149d43 100644 --- a/action.yml +++ b/action.yml @@ -78,7 +78,7 @@ runs: with: channels: conda-forge,bioconda channel-priority: strict - miniforge-version: 25.9.1 # TODO: set back to "latest" once this issue in the conda-libmamba-solver is patched and/or released: https://github.com/conda/conda-libmamba-solver/issues/798 + miniforge-version: 25.9.1-0 # TODO: set back to "latest" once this issue in the conda-libmamba-solver is patched and/or released: https://github.com/conda/conda-libmamba-solver/issues/798 environment-file: .snakemake.environment.yaml activate-environment: snakemake From df0dcbe86ee3d3aa7c9cc7ab360d081b4d820c05 Mon Sep 17 00:00:00 2001 From: David Laehnemann <1379875+dlaehnemann@users.noreply.github.com> Date: Thu, 11 Dec 2025 15:43:17 +0100 Subject: [PATCH 3/3] docs: update TODO to fix PR for actual underlying issue --- action.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/action.yml b/action.yml index 2149d43..7e721a6 100644 --- a/action.yml +++ b/action.yml @@ -78,7 +78,7 @@ runs: with: channels: conda-forge,bioconda channel-priority: strict - miniforge-version: 25.9.1-0 # TODO: set back to "latest" once this issue in the conda-libmamba-solver is patched and/or released: https://github.com/conda/conda-libmamba-solver/issues/798 + miniforge-version: 25.9.1-0 # TODO: set back to "latest" once this issue in the conda installer (template) is fixed and released: https://github.com/conda/constructor/pull/1135 environment-file: .snakemake.environment.yaml activate-environment: snakemake