diff --git a/.gitignore b/.gitignore
index 0e88ebb34..035e34ff0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -36,3 +36,4 @@ internal/tmp
 # OSS repo clones
 multiqc_docs/multiqc_repo
 wave_docs/wave_repo
+nextflow_docs/nextflow_repo
diff --git a/README.md b/README.md
index 8ae0f0b20..c3e580961 100644
--- a/README.md
+++ b/README.md
@@ -11,6 +11,7 @@ For more information, see:
 - [Seqera documentation](#seqera-documentation)
   - [Architecture](#architecture)
     - [Seqera Platform](#seqera-platform)
+    - [Nextflow](#nextflow)
     - [Wave](#wave)
   - [Writing new content](#writing-new-content)
   - [Fixing legacy content](#fixing-legacy-content)
@@ -19,7 +20,7 @@ For more information, see:
 
 ## Architecture
 
-Contentful/relevant files include:
+Relevant files/folders include:
 
 ```
 ├── README.md
@@ -35,7 +36,11 @@ Contentful/relevant files include:
 │   ├── version-23.2.0-sidebars.json
 │   └── version-23.3.0-sidebars.json
 ├── platform-enterprise_versions.json
-└── wave_docs // Git submodule
+├── nextflow_docs
+│   └── sidebar.json
+└── wave_docs
+    └── sidebar.json
+
 ```
 
 ### Seqera Platform
@@ -44,11 +49,13 @@ The Platform documentation is versioned and lives in the `platform-enterprise_ve
 
 We have a script which can select a commit (or ideally release tag) to be used for publishing a new version on the docs website.
 
-### Wave
+### Nextflow
 
-Wave documentation is available as a Git submodule. Wave documentation is not versioned, and lives in the `wave_docs` directory. Changes to the Wave documentation must be made in the [Wave repo](https://github.com/seqeralabs/wave/tree/master/docs). To enable access to the Wave docs in the submodule, after cloning this repository you must run `git submodule update --init --recursive`.
+Nextflow documentation is pulled from the [`nextflow-io/nextflow`](https://github.com/nextflow-io/nextflow) repo during the docs build. It is not versioned and lives in the `nextflow_docs` directory. Changes to the Nextflow documentation must be made in the [`nextflow-io/nextflow`](https://github.com/nextflow-io/nextflow) repo. Currently pulling from a migration branch.
+
+### Wave
 
-To incorporate documentation changes from the Wave repository, run the following command: `git submodule update --recursive --remote`. This is mandatory, or published documentation cannot reflect any changes made to the Wave documentation since this command was last run. If you accidentally run the aforementioned command and want to revert, run the following command to revert to the previous commit ID for the Wave repository: `git submodule update --init`.
+Wave documentation is pulled from the [seqeralabs/wave/](https://github.com/seqeralabs/wave/) repo during the docs build. It is not versioned and lives in the `wave_docs` directory. Changes to the Wave documentation must be made in the [Wave](https://github.com/seqeralabs/wave/tree/master/docs) repo.
 
 ## Writing new content
 
diff --git a/docusaurus.config.js b/docusaurus.config.js
index 24ccf754f..a2b4fb697 100644
--- a/docusaurus.config.js
+++ b/docusaurus.config.js
@@ -109,6 +109,28 @@ export default async function createConfigAsync() {
       sidebarPath: "./multiqc_docs/sidebar.js",
     },
   ];
+
+  const docs_nextflow = [
+    "@docusaurus/plugin-content-docs",
+    {
+      id: "nextflow",
+      routeBasePath: "/nextflow",
+      path: "nextflow_docs/nextflow_repo/docs",
+      remarkPlugins: [
+        (await import("remark-code-import")).default,
+        (await require("remark-math")).default,
+        (await import("docusaurus-remark-plugin-tab-blocks")).default,
+        (await require("remark-yaml-to-table")).default,
+        (await require("remark-sectionize")).default,
+      ],
+      rehypePlugins: [(await require("rehype-katex")).default],
+      editUrl: ({ docPath }) => {
+        return `https://github.com/nextflow-io/nextflow/blob/master/docs${docPath.replace('nextflow_docs/nextflow_repo/docs', '')}`
+      },
+      sidebarPath: "./nextflow_docs/sidebar.json",
+    },
+  ];
+
   const docs_fusion = [
     "@docusaurus/plugin-content-docs",
     {
@@ -120,6 +142,7 @@ export default async function createConfigAsync() {
         (await require("remark-math")).default,
         (await import("docusaurus-remark-plugin-tab-blocks")).default,
         (await require("remark-yaml-to-table")).default,
+        (await require("remark-code-import")).default,
       ],
       rehypePlugins: [(await require("rehype-katex")).default],
       editUrl: "https://github.com/seqeralabs/docs/tree/master/",
@@ -159,6 +182,7 @@ export default async function createConfigAsync() {
     "\n  EXCLUDE_PLATFORM_OPENAPI: " +
       (process.env.EXCLUDE_PLATFORM_OPENAPI ? true : false),
     "\n  EXCLUDE_MULTIQC: " + (process.env.EXCLUDE_MULTIQC ? true : false),
+    "\n  EXCLUDE_NEXTFLOW: " + (process.env.EXCLUDE_NEXTFLOW ? true : false),
     "\n  EXCLUDE_FUSION: " + (process.env.EXCLUDE_FUSION ? true : false),
     "\n  EXCLUDE_WAVE: " + (process.env.EXCLUDE_WAVE ? true : false),
     "\n  INCLUDE_NEXT: " + (process.env.INCLUDE_NEXT ? true : false),
@@ -222,6 +246,9 @@ export default async function createConfigAsync() {
       defaultLocale: "en",
       locales: ["en"],
     },
+    markdown: {
+      mermaid: true,
+    },
     themes: [
       "docusaurus-theme-openapi-docs",
       "docusaurus-theme-search-typesense",
@@ -241,6 +268,7 @@ export default async function createConfigAsync() {
               require.resolve("./src/css/def-list.css"),
               require.resolve("./src/css/components/checklist.css"),
               require.resolve("./src/css/components/box.css"),
+              require.resolve("./src/css/components/indentSection.css"),
               require.resolve("./src/css/theme-colors.css"),
               require.resolve("./src/css/api.css"),
               require.resolve("./src/css/fonts/inter.css"),
@@ -263,6 +291,7 @@ export default async function createConfigAsync() {
       process.env.EXCLUDE_PLATFORM_API ? null : docs_platform_api,
       process.env.EXCLUDE_PLATFORM_OPENAPI ? null : docs_platform_openapi,
       process.env.EXCLUDE_MULTIQC ? null : docs_multiqc,
+      process.env.EXCLUDE_NEXTFLOW ? null : docs_nextflow,
       process.env.EXCLUDE_FUSION ? null : docs_fusion,
       process.env.EXCLUDE_WAVE ? null : docs_wave,
 
@@ -347,9 +376,8 @@ export default async function createConfigAsync() {
             docsPluginId: "platform-enterprise",
           },
           {
-            to: "https://www.nextflow.io/docs/latest/",
-            html: 'Nextflow <svg width="12" height="12" aria-hidden="true" viewBox="0 0 24 24" class="iconExternalLink_nPIU" style="margin-left:6px;opacity:0.6;"><path fill="currentColor" d="M21 13v10h-21v-19h12v2h-10v15h17v-8h2zm3-12h-10.988l4.035 4-6.977 7.07 2.828 2.828 6.977-7.07 4.125 4.172v-11z"></path></svg>',
-            position: "left",
+            to: "/nextflow",
+            label: "Nextflow",
             target: "_blank",
           },
           {
diff --git a/internal/fetch-docs-oss.mjs b/internal/fetch-docs-oss.mjs
index de3993ed0..ea0bcfabf 100644
--- a/internal/fetch-docs-oss.mjs
+++ b/internal/fetch-docs-oss.mjs
@@ -20,6 +20,12 @@ const repositories = [
     path: path.join(__dirname, "..", "wave_docs", "wave_repo"),
     branch: "master",
   },
+  {
+    name: "nextflow",
+    url: "https://github.com/nextflow-io/nextflow.git",
+    path: path.join(__dirname, "..", "nextflow_docs", "nextflow_repo"),
+    branch: "docs-migration",
+  },
 ];
 
 // Function to clone or update a repository
diff --git a/netlify.toml b/netlify.toml
index e5193a26b..4d7b4ab4c 100644
--- a/netlify.toml
+++ b/netlify.toml
@@ -31,3 +31,15 @@
   from = "/assets/*"
   to = "https://seqera-docs-api.netlify.app/assets/:splat"
   status = 200
+
+[build.environment]
+NODE_OPTIONS = "--max-old-space-size=4096"
+# EXCLUDE_CHANGELOG = "true"
+# EXCLUDE_PLATFORM_ENTERPRISE= "true"
+# EXCLUDE_PLATFORM_CLOUD = "true"
+# EXCLUDE_PLATFORM_API = "true"
+# EXCLUDE_PLATFORM_OPENAPI = "true"
+# EXCLUDE_MULTIQC = "true"
+# EXCLUDE_NEXTFLOW = "true"
+# EXCLUDE_FUSION = "true"
+# EXCLUDE_WAVE = "true"
diff --git a/nextflow_docs/sidebar.json b/nextflow_docs/sidebar.json
new file mode 100644
index 000000000..4faa23296
--- /dev/null
+++ b/nextflow_docs/sidebar.json
@@ -0,0 +1,196 @@
+{
+    "sidebar": [
+        "index",
+        {
+        "type": "category",
+        "label": "Getting started",
+        "collapsed": false,
+        "items": [
+            "overview",
+            "install",
+            "developer-env",
+            "your-first-script"
+        ]
+        },
+        {
+            "type": "category",
+            "label": "Running pipelines",
+            "collapsed": true,
+            "items": [
+                "cli",
+                "config",
+                "executor",
+                "cache-and-resume",
+                "reports"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Developing pipelines",
+            "collapsed": true,
+            "items": [
+                "script",
+                "working-with-files",
+                "process",
+                "process-typed",
+                "channel",
+                "workflow",
+                "module",
+                "notifications",
+                "secrets",
+                "sharing",
+                "vscode"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Software dependencies",
+            "collapsed": true,
+            "items": [
+                "git",
+                "container",
+                "conda",
+                "spack",
+                "wave"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Compute and storage",
+            "collapsed": true,
+            "items": [
+                "aws",
+                "amazons3",
+                "azure",
+                "google",
+                "kubernetes",
+                "fusion"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Plugins",
+            "collapsed": true,
+            "items": [
+                "plugins/plugins",
+                "plugins/using-plugins",
+                "plugins/developing-plugins",
+                "plugins/plugin-registry"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Language reference",
+            "collapsed": true,
+            "items": [
+                "reference/feature-flags",
+                "reference/syntax",
+                {
+                    "type": "category",
+                    "label": "Standard library",
+                    "link": { "type": "doc", "id": "reference/stdlib" },
+                    "items": [
+                        "reference/stdlib-namespaces",
+                        "reference/stdlib-types",
+                        "reference/stdlib-groovy"
+                    ]
+                },
+                "reference/process",
+                "reference/channel",
+                "reference/operator"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Runtime reference",
+            "collapsed": true,
+            "items": [
+                "reference/cli",
+                "reference/config",
+                "reference/env-vars"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Updates",
+            "collapsed": true,
+            "items": [
+                "updating-nextflow",
+                "strict-syntax",
+                {
+                    "type": "category",
+                    "label": "Migration notes",
+                    "link": { "type": "doc", "id": "migrations/index" },
+                    "items": [
+                        "migrations/25-10",
+                        "migrations/25-04",
+                        "migrations/24-10",
+                        "migrations/24-04",
+                        "migrations/dsl1"
+                    ]
+                }
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Contributing",
+            "collapsed": true,
+            "items": [
+                "developer/index",
+                "developer/diagram",
+                "developer/config-scopes",
+                {
+                    "type": "category",
+                    "label": "Packages",
+                    "link": { "type": "doc", "id": "developer/packages" },
+                    "items": [
+                        "developer/nextflow",
+                        "developer/nextflow.ast",
+                        "developer/nextflow.cache",
+                        "developer/nextflow.cli",
+                        "developer/nextflow.cloud.aws",
+                        "developer/nextflow.cloud.aws.nio",
+                        "developer/nextflow.cloud.azure",
+                        "developer/nextflow.cloud.google",
+                        "developer/nextflow.config",
+                        "developer/nextflow.container",
+                        "developer/nextflow.dag",
+                        "developer/nextflow.executor",
+                        "developer/nextflow.extension",
+                        "developer/nextflow.k8s",
+                        "developer/nextflow.plugin",
+                        "developer/nextflow.processor",
+                        "developer/nextflow.scm",
+                        "developer/nextflow.script",
+                        "developer/nextflow.secret",
+                        "developer/nextflow.trace"
+                    ]
+                }
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Tutorials",
+            "collapsed": true,
+            "items": [
+                "tutorials/rnaseq-nf",
+                "tutorials/data-lineage",
+                "tutorials/workflow-outputs",
+                "tutorials/static-types",
+                "tutorials/metrics",
+                "tutorials/flux"
+            ]
+        },
+        {
+            "type": "category",
+            "label": "Guides",
+            "collapsed": true,
+            "items": [
+                "guides/aws-java-sdk-v2",
+                "guides/gradle-plugin",
+                "guides/migrate-plugin",
+                "guides/updating-spot-retries"
+            ]
+        }
+    ]
+}
diff --git a/package-lock.json b/package-lock.json
index 2fd79607d..3a9a8fc3a 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -14,10 +14,12 @@
         "@docusaurus/plugin-google-gtag": "^3.8.1",
         "@docusaurus/plugin-google-tag-manager": "^3.8.1",
         "@docusaurus/preset-classic": "^3.8.1",
+        "@docusaurus/theme-mermaid": "^3.8.1",
         "@mdx-js/react": "^3.0.0",
         "@rspack/core": "^1.4.11",
         "@tailwindcss/postcss": "^4.1.12",
         "clsx": "^1.2.1",
+        "delaunator": "^5.0.1",
         "docusaurus-plugin-openapi-docs": "^4.5.1",
         "docusaurus-remark-plugin-tab-blocks": "^3.1.0",
         "docusaurus-theme-openapi-docs": "^4.5.1",
@@ -35,9 +37,12 @@
         "react-dom": "^18.2.0",
         "rehype-katex": "^7.0.1",
         "remark-code-import": "^1.2.0",
+        "remark-definition-list": "^2.0.0",
         "remark-deflist": "^1.0.0",
         "remark-math": "^6.0.0",
+        "remark-sectionize": "^2.1.0",
         "remark-yaml-to-table": "github:seqeralabs/remark-yaml-to-table",
+        "unist-util-visit": "^5.0.0",
         "webpack-dev-server": "^5.2.2",
         "yaml": "^2.8.1"
       },
@@ -98,7 +103,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/cache-browser-local-storage/-/cache-browser-local-storage-4.25.2.tgz",
       "integrity": "sha512-tA1rqAafI+gUdewjZwyTsZVxesl22MTgLWRKt1+TBiL26NiKx7SjRqTI3pzm8ngx1ftM5LSgXkVIgk2+SRgPTg==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/cache-common": "4.25.2"
       }
@@ -107,15 +111,13 @@
       "version": "4.25.2",
       "resolved": "https://registry.npmjs.org/@algolia/cache-common/-/cache-common-4.25.2.tgz",
       "integrity": "sha512-E+aZwwwmhvZXsRA1+8DhH2JJIwugBzHivASTnoq7bmv0nmForLyH7rMG5cOTiDK36DDLnKq1rMGzxWZZ70KZag==",
-      "license": "MIT",
-      "peer": true
+      "license": "MIT"
     },
     "node_modules/@algolia/cache-in-memory": {
       "version": "4.25.2",
       "resolved": "https://registry.npmjs.org/@algolia/cache-in-memory/-/cache-in-memory-4.25.2.tgz",
       "integrity": "sha512-KYcenhfPKgR+WJ6IEwKVEFMKKCWLZdnYuw08+3Pn1cxAXbJcTIKjoYgEXzEW6gJmDaau2l55qNrZo6MBbX7+sw==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/cache-common": "4.25.2"
       }
@@ -140,7 +142,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-account/-/client-account-4.25.2.tgz",
       "integrity": "sha512-IfRGhBxvjli9mdexrCxX2N4XT9NBN3tvZK5zCaL8zkDcgsthiM9WPvGIZS/pl/FuXB7hA0lE5kqOzsQDP6OmGQ==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/client-common": "4.25.2",
         "@algolia/client-search": "4.25.2",
@@ -152,7 +153,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-4.25.2.tgz",
       "integrity": "sha512-HXX8vbJPYW29P18GxciiwaDpQid6UhpPP9nW9WE181uGUgFhyP5zaEkYWf9oYBrjMubrGwXi5YEzJOz6Oa4faA==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/requester-common": "4.25.2",
         "@algolia/transporter": "4.25.2"
@@ -163,7 +163,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-search/-/client-search-4.25.2.tgz",
       "integrity": "sha512-pO/LpVnQlbJpcHRk+AroWyyFnh01eOlO6/uLZRUmYvr/hpKZKxI6n7ufgTawbo0KrAu2CePfiOkStYOmDuRjzQ==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/client-common": "4.25.2",
         "@algolia/requester-common": "4.25.2",
@@ -175,7 +174,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-analytics/-/client-analytics-4.25.2.tgz",
       "integrity": "sha512-4Yxxhxh+XjXY8zPyo+h6tQuyoJWDBn8E3YLr8j+YAEy5p+r3/5Tp+ANvQ+hNaQXbwZpyf5d4ViYOBjJ8+bWNEg==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/client-common": "4.25.2",
         "@algolia/client-search": "4.25.2",
@@ -188,7 +186,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-4.25.2.tgz",
       "integrity": "sha512-HXX8vbJPYW29P18GxciiwaDpQid6UhpPP9nW9WE181uGUgFhyP5zaEkYWf9oYBrjMubrGwXi5YEzJOz6Oa4faA==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/requester-common": "4.25.2",
         "@algolia/transporter": "4.25.2"
@@ -199,7 +196,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-search/-/client-search-4.25.2.tgz",
       "integrity": "sha512-pO/LpVnQlbJpcHRk+AroWyyFnh01eOlO6/uLZRUmYvr/hpKZKxI6n7ufgTawbo0KrAu2CePfiOkStYOmDuRjzQ==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/client-common": "4.25.2",
         "@algolia/requester-common": "4.25.2",
@@ -235,7 +231,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-personalization/-/client-personalization-4.25.2.tgz",
       "integrity": "sha512-K81PRaHF77mHv2u8foWTHnIf5c+QNf/SnKNM7rB8JPi7TMYi4E5o2mFbgdU1ovd8eg9YMOEAuLkl1Nz1vbM3zQ==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/client-common": "4.25.2",
         "@algolia/requester-common": "4.25.2",
@@ -247,7 +242,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-4.25.2.tgz",
       "integrity": "sha512-HXX8vbJPYW29P18GxciiwaDpQid6UhpPP9nW9WE181uGUgFhyP5zaEkYWf9oYBrjMubrGwXi5YEzJOz6Oa4faA==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/requester-common": "4.25.2",
         "@algolia/transporter": "4.25.2"
@@ -273,6 +267,7 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-search/-/client-search-5.32.0.tgz",
       "integrity": "sha512-kmK5nVkKb4DSUgwbveMKe4X3xHdMsPsOVJeEzBvFJ+oS7CkBPmpfHAEq+CcmiPJs20YMv6yVtUT9yPWL5WgAhg==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@algolia/client-common": "5.32.0",
         "@algolia/requester-browser-xhr": "5.32.0",
@@ -308,15 +303,13 @@
       "version": "4.25.2",
       "resolved": "https://registry.npmjs.org/@algolia/logger-common/-/logger-common-4.25.2.tgz",
       "integrity": "sha512-aUXpcodoIpLPsnVc2OHgC9E156R7yXWLW2l+Zn24Cyepfq3IvmuVckBvJDpp7nPnXkEzeMuvnVxQfQsk+zP/BA==",
-      "license": "MIT",
-      "peer": true
+      "license": "MIT"
     },
     "node_modules/@algolia/logger-console": {
       "version": "4.25.2",
       "resolved": "https://registry.npmjs.org/@algolia/logger-console/-/logger-console-4.25.2.tgz",
       "integrity": "sha512-H3Y+UB0Ty0htvMJ6zDSufhFTSDlg3Pyj3AXilfDdDRcvfhH4C/cJNVm+CTaGORxL5uKABGsBp+SZjsEMTyAunQ==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/logger-common": "4.25.2"
       }
@@ -341,7 +334,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/recommend/-/recommend-4.25.2.tgz",
       "integrity": "sha512-puRrGeXwAuVa4mLdvXvmxHRFz9MkcCOLPcjz7MjU4NihlpIa+lZYgikJ7z0SUAaYgd6l5Bh00hXiU/OlX5ffXQ==",
       "license": "MIT",
-      "peer": true,
       "dependencies": {
         "@algolia/cache-browser-local-storage": "4.25.2",
         "@algolia/cache-common": "4.25.2",
@@ -361,7 +353,6 @@
       "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-4.25.2.tgz",
       "integrity": "sha512-HXX8vbJPYW29P18GxciiwaDpQid6UhpPP9nW9WE181uGUgFhyP5zaEkYWf9oYBrjMubrGwXi5YEzJOz6Oa4faA==",
       "license": "MIT",
-      "peer": true,
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+      "resolved": "https://registry.npmjs.org/unist-builder/-/unist-builder-4.0.0.tgz",
+      "integrity": "sha512-wmRFnH+BLpZnTKpc5L7O67Kac89s9HMrtELpnNaE6TAobq5DTZZs5YaTQfAZBA9bFPECx2uVAPO31c+GVug8mg==",
+      "license": "MIT",
+      "dependencies": {
+        "@types/unist": "^3.0.0"
+      },
+      "funding": {
+        "type": "opencollective",
+        "url": "https://opencollective.com/unified"
+      }
+    },
     "node_modules/unist-util-find-after": {
       "version": "5.0.0",
       "resolved": "https://registry.npmjs.org/unist-util-find-after/-/unist-util-find-after-5.0.0.tgz",
@@ -27022,6 +28636,55 @@
         "url": "https://opencollective.com/unified"
       }
     },
+    "node_modules/vscode-jsonrpc": {
+      "version": "8.2.0",
+      "resolved": "https://registry.npmjs.org/vscode-jsonrpc/-/vscode-jsonrpc-8.2.0.tgz",
+      "integrity": "sha512-C+r0eKJUIfiDIfwJhria30+TYWPtuHJXHtI7J0YlOmKAo7ogxP20T0zxB7HZQIFhIyvoBPwWskjxrvAtfjyZfA==",
+      "license": "MIT",
+      "engines": {
+        "node": ">=14.0.0"
+      }
+    },
+    "node_modules/vscode-languageserver": {
+      "version": "9.0.1",
+      "resolved": "https://registry.npmjs.org/vscode-languageserver/-/vscode-languageserver-9.0.1.tgz",
+      "integrity": "sha512-woByF3PDpkHFUreUa7Hos7+pUWdeWMXRd26+ZX2A8cFx6v/JPTtd4/uN0/jB6XQHYaOlHbio03NTHCqrgG5n7g==",
+      "license": "MIT",
+      "dependencies": {
+        "vscode-languageserver-protocol": "3.17.5"
+      },
+      "bin": {
+        "installServerIntoExtension": "bin/installServerIntoExtension"
+      }
+    },
+    "node_modules/vscode-languageserver-protocol": {
+      "version": "3.17.5",
+      "resolved": "https://registry.npmjs.org/vscode-languageserver-protocol/-/vscode-languageserver-protocol-3.17.5.tgz",
+      "integrity": "sha512-mb1bvRJN8SVznADSGWM9u/b07H7Ecg0I3OgXDuLdn307rl/J3A9YD6/eYOssqhecL27hK1IPZAsaqh00i/Jljg==",
+      "license": "MIT",
+      "dependencies": {
+        "vscode-jsonrpc": "8.2.0",
+        "vscode-languageserver-types": "3.17.5"
+      }
+    },
+    "node_modules/vscode-languageserver-textdocument": {
+      "version": "1.0.12",
+      "resolved": "https://registry.npmjs.org/vscode-languageserver-textdocument/-/vscode-languageserver-textdocument-1.0.12.tgz",
+      "integrity": "sha512-cxWNPesCnQCcMPeenjKKsOCKQZ/L6Tv19DTRIGuLWe32lyzWhihGVJ/rcckZXJxfdKCFvRLS3fpBIsV/ZGX4zA==",
+      "license": "MIT"
+    },
+    "node_modules/vscode-languageserver-types": {
+      "version": "3.17.5",
+      "resolved": "https://registry.npmjs.org/vscode-languageserver-types/-/vscode-languageserver-types-3.17.5.tgz",
+      "integrity": "sha512-Ld1VelNuX9pdF39h2Hgaeb5hEZM2Z3jUrrMgWQAu82jMtZp7p3vJT3BzToKtZI7NgQssZje5o0zryOrhQvzQAg==",
+      "license": "MIT"
+    },
+    "node_modules/vscode-uri": {
+      "version": "3.0.8",
+      "resolved": "https://registry.npmjs.org/vscode-uri/-/vscode-uri-3.0.8.tgz",
+      "integrity": "sha512-AyFQ0EVmsOZOlAnxoFOGOq1SQDWAB7C6aqMGS23svWAllfOaxbuFvcT8D1i8z3Gyn8fraVeZNNmN6e9bxxXkKw==",
+      "license": "MIT"
+    },
     "node_modules/warning": {
       "version": "4.0.3",
       "resolved": "https://registry.npmjs.org/warning/-/warning-4.0.3.tgz",
@@ -27074,6 +28737,7 @@
       "resolved": "https://registry.npmjs.org/webpack/-/webpack-5.100.1.tgz",
       "integrity": "sha512-YJB/ESPUe2Locd0NKXmw72Dx8fZQk1gTzI6rc9TAT4+Sypbnhl8jd8RywB1bDsDF9Dy1RUR7gn3q/ZJTd0OZZg==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@types/eslint-scope": "^3.7.7",
         "@types/estree": "^1.0.8",
@@ -27819,6 +29483,7 @@
       "version": "2.8.1",
       "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.8.1.tgz",
       "integrity": "sha512-lcYcMxX2PO9XMGvAJkJ3OsNMw+/7FKes7/hgerGUYWIoWu5j/+YQqcZr5JnPZWzOsEBgMbSbiSTn/dv/69Mkpw==",
+      "license": "ISC",
       "bin": {
         "yaml": "bin.mjs"
       },
diff --git a/package.json b/package.json
index 19aea5c17..3fc3f172b 100644
--- a/package.json
+++ b/package.json
@@ -28,10 +28,12 @@
     "@docusaurus/plugin-google-gtag": "^3.8.1",
     "@docusaurus/plugin-google-tag-manager": "^3.8.1",
     "@docusaurus/preset-classic": "^3.8.1",
+    "@docusaurus/theme-mermaid": "^3.8.1",
     "@mdx-js/react": "^3.0.0",
     "@rspack/core": "^1.4.11",
     "@tailwindcss/postcss": "^4.1.12",
     "clsx": "^1.2.1",
+    "delaunator": "^5.0.1",
     "docusaurus-plugin-openapi-docs": "^4.5.1",
     "docusaurus-remark-plugin-tab-blocks": "^3.1.0",
     "docusaurus-theme-openapi-docs": "^4.5.1",
@@ -49,9 +51,12 @@
     "react-dom": "^18.2.0",
     "rehype-katex": "^7.0.1",
     "remark-code-import": "^1.2.0",
+    "remark-definition-list": "^2.0.0",
     "remark-deflist": "^1.0.0",
     "remark-math": "^6.0.0",
+    "remark-sectionize": "^2.1.0",
     "remark-yaml-to-table": "github:seqeralabs/remark-yaml-to-table",
+    "unist-util-visit": "^5.0.0",
     "webpack-dev-server": "^5.2.2",
     "yaml": "^2.8.1"
   },
diff --git a/src/components/VersionedAdmonitions/AddedInVersion.tsx b/src/components/VersionedAdmonitions/AddedInVersion.tsx
new file mode 100644
index 000000000..b8e7ecddd
--- /dev/null
+++ b/src/components/VersionedAdmonitions/AddedInVersion.tsx
@@ -0,0 +1,16 @@
+import React from "react";
+import VersionedAdmonition from "./VersionedAdmonition";
+
+interface Props {
+  tool?: "nextflow";
+  version?: string;
+  children: React.ReactNode;
+}
+
+const AddedInVersion: React.FC<Props> = ({ tool = "nextflow", version, children }) => (
+  <VersionedAdmonition type="info" tool={tool} version={version} titlePrefix="Added in version">
+    {children}
+  </VersionedAdmonition>
+);
+
+export default AddedInVersion; 
\ No newline at end of file
diff --git a/src/components/VersionedAdmonitions/ChangedInVersion.tsx b/src/components/VersionedAdmonitions/ChangedInVersion.tsx
new file mode 100644
index 000000000..f779e394a
--- /dev/null
+++ b/src/components/VersionedAdmonitions/ChangedInVersion.tsx
@@ -0,0 +1,16 @@
+import React from "react";
+import VersionedAdmonition from "./VersionedAdmonition";
+
+interface Props {
+  tool?: "nextflow";
+  version?: string;
+  children: React.ReactNode;
+}
+
+const ChangedInVersion: React.FC<Props> = ({ tool = "nextflow", version, children }) => (
+  <VersionedAdmonition type="warning" tool={tool} version={version} titlePrefix="Changed in version">
+    {children}
+  </VersionedAdmonition>
+);
+
+export default ChangedInVersion; 
\ No newline at end of file
diff --git a/src/components/VersionedAdmonitions/DeprecatedInVersion.tsx b/src/components/VersionedAdmonitions/DeprecatedInVersion.tsx
new file mode 100644
index 000000000..db3c54db4
--- /dev/null
+++ b/src/components/VersionedAdmonitions/DeprecatedInVersion.tsx
@@ -0,0 +1,16 @@
+import React from "react";
+import VersionedAdmonition from "./VersionedAdmonition";
+
+interface Props {
+  tool?: "nextflow";
+  version?: string;
+  children: React.ReactNode;
+}
+
+const DeprecatedInVersion: React.FC<Props> = ({ tool = "nextflow", version, children }) => (
+  <VersionedAdmonition type="danger" tool={tool} version={version} titlePrefix="Deprecated in version">
+    {children}
+  </VersionedAdmonition>
+);
+
+export default DeprecatedInVersion; 
\ No newline at end of file
diff --git a/src/components/VersionedAdmonitions/VersionedAdmonition.tsx b/src/components/VersionedAdmonitions/VersionedAdmonition.tsx
new file mode 100644
index 000000000..13f71508e
--- /dev/null
+++ b/src/components/VersionedAdmonitions/VersionedAdmonition.tsx
@@ -0,0 +1,31 @@
+import React, { ReactNode } from "react";
+import Admonition from "@theme/Admonition";
+import { getDisplayVersion } from "./getStableVersion";
+
+interface VersionedAdmonitionProps {
+  type?: "info" | "warning" | "danger" | "success";
+  tool?: "nextflow";
+  version?: string;
+  titlePrefix: string; // e.g. "Added in version"
+  children: ReactNode;
+}
+
+const VersionedAdmonition: React.FC<VersionedAdmonitionProps> = ({
+  type = "info",
+  tool = "nextflow",
+  version,
+  titlePrefix,
+  children,
+  ...props
+}) => {
+  const displayVersion = getDisplayVersion(tool, version);
+  const displayTitle = `${titlePrefix} ${displayVersion}`;
+
+  return (
+    <Admonition type={type} title={displayTitle} {...props}>
+      {children}
+    </Admonition>
+  );
+};
+
+export default VersionedAdmonition; 
\ No newline at end of file
diff --git a/src/components/VersionedAdmonitions/getStableVersion.tsx b/src/components/VersionedAdmonitions/getStableVersion.tsx
new file mode 100644
index 000000000..0b0035f9d
--- /dev/null
+++ b/src/components/VersionedAdmonitions/getStableVersion.tsx
@@ -0,0 +1,22 @@
+import stableVersions from '../../../stableVersion.json';
+
+type Tool = keyof typeof stableVersions;
+
+type Rule = {
+  stable: string;
+  replaces: string[];
+};
+
+export function getDisplayVersion(tool: Tool, version?: string): string {
+  const toolRules = stableVersions[tool] as Rule[];
+  if (!toolRules) return version || "unknown";
+
+  // If multiple rules, find the first that matches the version in replaces
+  for (const rule of toolRules) {
+    if (version && rule.replaces.includes(version)) {
+      return rule.stable;
+    }
+  }
+  // If no match, return the latest stable (last in the array)
+  return version || toolRules[toolRules.length - 1].stable;
+} 
\ No newline at end of file
diff --git a/src/components/VersionedAdmonitions/index.ts b/src/components/VersionedAdmonitions/index.ts
new file mode 100644
index 000000000..e785e5e82
--- /dev/null
+++ b/src/components/VersionedAdmonitions/index.ts
@@ -0,0 +1,3 @@
+export { default as AddedInVersion } from "./AddedInVersion";
+export { default as ChangedInVersion } from "./ChangedInVersion";
+export { default as DeprecatedInVersion } from "./DeprecatedInVersion"; 
\ No newline at end of file
diff --git a/src/css/components/indentSection.css b/src/css/components/indentSection.css
new file mode 100644
index 000000000..ed32a4987
--- /dev/null
+++ b/src/css/components/indentSection.css
@@ -0,0 +1,5 @@
+section > section h5 ~ *,
+section > section h6 ~ *,
+section .admonition {
+  margin-left: 2em !important;
+}
\ No newline at end of file
diff --git a/src/modules/Homepage/index.tsx b/src/modules/Homepage/index.tsx
index 7efc72e69..e21bb7bdd 100644
--- a/src/modules/Homepage/index.tsx
+++ b/src/modules/Homepage/index.tsx
@@ -218,7 +218,7 @@ export default function Home(): JSX.Element {
                           </Link>
                         </li>
                         <li>
-                          <Link to="https://nextflow.io/docs/latest/cli.html">
+                          <Link to="nextflow/cli">
                             Nextflow CLI
                           </Link>
                         </li>
@@ -251,8 +251,8 @@ export default function Home(): JSX.Element {
                     </div>
                     <div className="flex flex-row flex-wrap w-full gap-4">
                       <Link
-                        to="https://nextflow.io/docs/latest/index.html"
-                        className="flex-col items-start w-full max-w-full md:max-w-[30%] border border-gray-300 border-solid rounded-md p-6 flex ease-in-out duration-300 transition-all hover:no-underline hover:shadow-lg hover:border-brand dark:hover:border-brand-800"
+                        to="/nextflow/"
+                        className="flex-col items-start w-full max-w-[100%] md:max-w-[30%] border border-gray-300 border-solid rounded-lg p-6 flex ease-in-out duration-300 transition-all hover:no-underline hover:shadow-xl hover:border-brand dark:hover:border-brand-800"
                       >
                         <img
                           src="/img/nextflow-icon.svg"
diff --git a/src/pages/nextflow.tsx b/src/pages/nextflow.tsx
deleted file mode 100644
index 22b16ff9b..000000000
--- a/src/pages/nextflow.tsx
+++ /dev/null
@@ -1,8 +0,0 @@
-import React from 'react';
-
-export default function RedirectPage() {
-  React.useEffect(() => {
-    window.location.href = "https://www.nextflow.io/docs/latest";
-  }, []);
-  return null;
-}
diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx b/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx
index 28008d1ce..e8325ae3a 100644
--- a/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx
+++ b/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx
@@ -20,7 +20,7 @@ const products = [
   },
   {
     name: "Nextflow",
-    url: "https://www.nextflow.io/docs/latest/",
+    url: "/nextflow/",
   },
   { name: "MultiQC", url: "/multiqc" },
   { name: "Wave", url: "/wave" },
diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx
index 1d5a77f9e..e25205029 100644
--- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx
+++ b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx
@@ -30,7 +30,7 @@ const NavItems = ({ isDark = false, hideMenu }) => {
         <div className={styles.logoContainer}>
             <NavbarLogo/>
         </div>
-   
+
         {!hideMenu && (
           <nav className={clsx(styles.nav, { [styles.dark]: isDark })}>
             <div className={styles.navItemContainer}>
@@ -61,15 +61,9 @@ const NavItems = ({ isDark = false, hideMenu }) => {
               </ActiveLink>
             </li>
             <li>
-              <a
-                className={styles.navItemSpacing}
-                href="https://nextflow.io/docs/latest/index.html"
-              >
-                <div className={styles.linkContent}>
-                 Nextflow 
-                <svg width="10" height="10" aria-hidden="true" viewBox="0 0 24 24" className={styles.linkIcon}><path fill="currentColor" d="M21 13v10h-21v-19h12v2h-10v15h17v-8h2zm3-12h-10.988l4.035 4-6.977 7.07 2.828 2.828 6.977-7.07 4.125 4.172v-11z"></path></svg>
-                </div>
-              </a>
+            <ActiveLink url="/nextflow" customClasses={styles.navItemSpacing}> 
+                Nextflow
+              </ActiveLink>
             </li>
             <li>
             <ActiveLink url="/multiqc" customClasses={styles.navItemSpacing}> 
diff --git a/stableVersion.json b/stableVersion.json
new file mode 100644
index 000000000..4cecc7fa3
--- /dev/null
+++ b/stableVersion.json
@@ -0,0 +1,44 @@
+{
+  "nextflow": [
+    {
+      "stable": "stable 24.10.0",
+      "replaces": [
+        "24.05.0-edge",
+        "24.06.0-edge",
+        "24.07.0-edge",
+        "24.08.0-edge",
+        "24.09.0-edge"
+      ]
+    },
+        {
+      "stable": "stable 24.04.0",
+      "replaces": [
+        "23.11.0-edge",
+        "23.12.0-edge",
+        "24.01.0-edge",
+        "24.02.0-edge",
+        "24.03.0-edge"
+      ]
+    },
+        {
+      "stable": "stable 23.10.0",
+      "replaces": [
+        "23.05.0-edge",
+        "23.06.0-edge",
+        "23.07.0-edge",
+        "23.08.0-edge",
+        "23.09.0-edge"
+      ]
+        },
+        {
+      "stable": "stable 23.04.0",
+      "replaces": [
+        "22.11.0-edge",
+        "22.12.0-edge",
+        "23.01.0-edge",
+        "23.02.0-edge",
+        "23.03.0-edge"
+      ]
+    }
+  ]
+} 
\ No newline at end of file
diff --git a/static/_redirects b/static/_redirects
index 1946ec850..0f6d7b478 100644
--- a/static/_redirects
+++ b/static/_redirects
@@ -1,4 +1,4 @@
-/nextflow           https://www.nextflow.io/docs/latest/ 301!
+#/nextflow           https://www.nextflow.io/docs/latest/ 301!
 
 # Add redirects for version non-existent 25.2 to current docs
 /platform-enterprise/25.2/*    /platform-enterprise/:splat    301