Skip to content

Cannot pass layer selection of anndata #326

@wangjiawen2013

Description

@wangjiawen2013

Hi,
There maybe many data layers in the annotation table such as scaled data, normalized data and raw counts. spatialdata-plot use adata.X as default, how to plot using the raw.X and data in adata.layers ? We can set the data by use_raw=True or layer = ... in scanpy/squidpy, however, it seems that we cannot set these parameters in spatialdata.

Metadata

Metadata

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions