From 7e88d15aa5e5195fdf977906e425c720821a0439 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 1 Jun 2026 18:04:26 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.15.14 → v0.15.15](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.14...v0.15.15)
- [github.com/tox-dev/pyproject-fmt: v2.21.2 → v2.23.0](https://github.com/tox-dev/pyproject-fmt/compare/v2.21.2...v2.23.0)
- [github.com/biomejs/pre-commit: v2.4.15 → v2.4.16](https://github.com/biomejs/pre-commit/compare/v2.4.15...v2.4.16)
---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e8c685e..bd89f32 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -13,16 +13,16 @@ repos:
       - id: no-commit-to-branch
         args: ["--branch=main"]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.14
+    rev: v0.15.15
     hooks:
       - id: ruff-check
         args: ["--fix"]
       - id: ruff-format
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.21.2
+    rev: v2.23.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.15
+    rev: v2.4.16
     hooks:
       - id: biome-format

From efbca5001111593f339395dfc3dca247c78e209b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 1 Jun 2026 18:06:29 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 pyproject.toml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 22fbd7b..401ae8a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -26,20 +26,20 @@ dependencies = [
 ]
 
 [tool.hatch]
+version.source = "vcs"
 build.targets.wheel.bypass-selection = true  # This is not a package
 envs.default.python = "3.13"
 envs.default.installer = "uv"
 envs.default.scripts.build = "sphinx-build -M html . ./_build {args}"
 envs.default.scripts.clean = "git clean -fdX _build"
-envs.notebook.scripts.install-kernel = "python -m ipykernel install --user --name=scanpy-tutorials --display-name=\"Scanpy Tutorials\""
 envs.notebook.extra-dependencies = [
   "dask[distributed]",
   "ipykernel",
   "ipywidgets",
-  "scanpy[skmisc,leiden,dask]",
   "pooch",
+  "scanpy[skmisc,leiden,dask]",
 ]
-version.source = "vcs"
+envs.notebook.scripts.install-kernel = "python -m ipykernel install --user --name=scanpy-tutorials --display-name=\"Scanpy Tutorials\""
 
 [tool.ruff]
 line-length = 120