diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e8c685e..bd89f32 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -13,16 +13,16 @@ repos:
       - id: no-commit-to-branch
         args: ["--branch=main"]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.14
+    rev: v0.15.15
     hooks:
       - id: ruff-check
         args: ["--fix"]
       - id: ruff-format
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.21.2
+    rev: v2.23.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.15
+    rev: v2.4.16
     hooks:
       - id: biome-format
diff --git a/pyproject.toml b/pyproject.toml
index 22fbd7b..401ae8a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -26,20 +26,20 @@ dependencies = [
 ]
 
 [tool.hatch]
+version.source = "vcs"
 build.targets.wheel.bypass-selection = true  # This is not a package
 envs.default.python = "3.13"
 envs.default.installer = "uv"
 envs.default.scripts.build = "sphinx-build -M html . ./_build {args}"
 envs.default.scripts.clean = "git clean -fdX _build"
-envs.notebook.scripts.install-kernel = "python -m ipykernel install --user --name=scanpy-tutorials --display-name=\"Scanpy Tutorials\""
 envs.notebook.extra-dependencies = [
   "dask[distributed]",
   "ipykernel",
   "ipywidgets",
-  "scanpy[skmisc,leiden,dask]",
   "pooch",
+  "scanpy[skmisc,leiden,dask]",
 ]
-version.source = "vcs"
+envs.notebook.scripts.install-kernel = "python -m ipykernel install --user --name=scanpy-tutorials --display-name=\"Scanpy Tutorials\""
 
 [tool.ruff]
 line-length = 120