From d045fbd387bd65283e7aa4980604e18ac0675916 Mon Sep 17 00:00:00 2001 From: Nathan Schaefer Date: Fri, 7 Nov 2025 15:12:18 +0100 Subject: [PATCH] Update heRho_tally_pairwise_counts_vcf.py Fix bug: snp_array is undefined --- heRho/heRho_tally_pairwise_counts_vcf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/heRho/heRho_tally_pairwise_counts_vcf.py b/heRho/heRho_tally_pairwise_counts_vcf.py index 6c18ea0..09c1d71 100644 --- a/heRho/heRho_tally_pairwise_counts_vcf.py +++ b/heRho/heRho_tally_pairwise_counts_vcf.py @@ -265,7 +265,7 @@ def __init__( def variant_bed_intersect(self, bed_intervals=None): self.bed_variant_dict = {} - print("Sample: %s, Heterozygosity: %s" % (self.name, int(len(snp_array))/int(snp_array[-1]))) + print("Sample: %s, Heterozygosity: %s" % (self.name, int(len(self.snp_array))/int(self.snp_array[-1]))) for interval_index, interval in enumerate(bed_intervals): mask_array = (self.snp_array >= interval.start) & ( self.snp_array < interval.end