-
Notifications
You must be signed in to change notification settings - Fork 15
Expand file tree
/
Copy pathresults_presentation_setup.R
More file actions
334 lines (242 loc) · 12.9 KB
/
results_presentation_setup.R
File metadata and controls
334 lines (242 loc) · 12.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
###########################################################################################
###########################################################################################
# - Takes the results generated in analysis_msm.R and analysis_seq.R (for scenarios 1,2,3) and renames things with "_scen1", "_scen2", "_scen3".
# - I could have included this within the files analysis_msm.R and analysis_seq.R.
# - This file enables someone to take the results stored in the "results_detailed_msm" and "results_detailed_seq" folders and create tables and figures, without having to actually run the simulations themselves.
#
# Created by Ruth Keogh
###########################################################################################
###########################################################################################
#-----------------------
#true values
load(file="results_detailed_msm/surv1_true.RData")
load(file="results_detailed_msm/surv0_true.RData")
load(file="results_detailed_msm/survdiff_true.RData")
#-----------------------
#MSM-IPTW - scenario 1
load(file="results_detailed_msm/surv1_msm_sw_scen1.RData")
load(file="results_detailed_msm/surv0_msm_sw_scen1.RData")
load(file="results_detailed_msm/survdiff_msm_sw_scen1.RData")
load(file="results_detailed_msm/surv1_msm_swL_scen1.RData")
load(file="results_detailed_msm/surv0_msm_swL_scen1.RData")
load(file="results_detailed_msm/survdiff_msm_swL_scen1.RData")
load(file="results_detailed_msm/surv1_msm_swtrunc_scen1.RData")
load(file="results_detailed_msm/surv0_msm_swtrunc_scen1.RData")
load(file="results_detailed_msm/survdiff_msm_swtrunc_scen1.RData")
load(file="results_detailed_msm/surv1_msm_swLtrunc_scen1.RData")
load(file="results_detailed_msm/surv0_msm_swLtrunc_scen1.RData")
load(file="results_detailed_msm/survdiff_msm_swLtrunc_scen1.RData")
load(file="results_detailed_msm/weights_max_sw_scen1.RData")
load(file="results_detailed_msm/weights_max_swL_scen1.RData")
load(file="results_detailed_msm/weights_max_swtrunc_scen1.RData")
load(file="results_detailed_msm/weights_max_swLtrunc_scen1.RData")
load(file="results_detailed_msm/num_by_visit_msm_scen1.RData")
load(file="results_detailed_msm/prop_by_visit_msm_scen1.RData")
load(file="results_detailed_msm/num_alwaystreat_msm_scen1.RData")
load(file="results_detailed_msm/prop_alwaystreat_msm_scen1.RData")
load(file="results_detailed_msm/num_nevertreat_msm_scen1.RData")
load(file="results_detailed_msm/prop_nevertreat_msm_scen1.RData")
surv1_msm_sw_scen1=surv1_msm_sw
surv0_msm_sw_scen1=surv0_msm_sw
survdiff_msm_sw_scen1=survdiff_msm_sw
surv1_msm_swL_scen1=surv1_msm_swL
surv0_msm_swL_scen1=surv0_msm_swL
survdiff_msm_swL_scen1=survdiff_msm_swL
surv1_msm_swtrunc_scen1=surv1_msm_swtrunc
surv0_msm_swtrunc_scen1=surv0_msm_swtrunc
survdiff_msm_swtrunc_scen1=survdiff_msm_swtrunc
surv1_msm_swLtrunc_scen1=surv1_msm_swLtrunc
surv0_msm_swLtrunc_scen1=surv0_msm_swLtrunc
survdiff_msm_swLtrunc_scen1=survdiff_msm_swLtrunc
weights_msm_max_sw_scen1=weights_max_sw
weights_msm_max_swtrunc_scen1=weights_max_swtrunc
weights_msm_max_swL_scen1=weights_max_swL
weights_msm_max_swLtrunc_scen1=weights_max_swLtrunc
num_by_visit_msm_scen1=num_by_visit_msm
prop_by_visit_msm_scen1=prop_by_visit_msm
num_alwaystreat_msm_scen1=num_alwaystreat_msm
prop_alwaystreat_msm_scen1=prop_alwaystreat_msm
num_nevertreat_msm_scen1=num_nevertreat_msm
prop_nevertreat_msm_scen1=prop_nevertreat_msm
#-----------------------
#MSM-IPTW - scenario 2
load(file="results_detailed_msm/surv1_msm_sw_scen2.RData")
load(file="results_detailed_msm/surv0_msm_sw_scen2.RData")
load(file="results_detailed_msm/survdiff_msm_sw_scen2.RData")
load(file="results_detailed_msm/surv1_msm_swL_scen2.RData")
load(file="results_detailed_msm/surv0_msm_swL_scen2.RData")
load(file="results_detailed_msm/survdiff_msm_swL_scen2.RData")
load(file="results_detailed_msm/surv1_msm_swtrunc_scen2.RData")
load(file="results_detailed_msm/surv0_msm_swtrunc_scen2.RData")
load(file="results_detailed_msm/survdiff_msm_swtrunc_scen2.RData")
load(file="results_detailed_msm/surv1_msm_swLtrunc_scen2.RData")
load(file="results_detailed_msm/surv0_msm_swLtrunc_scen2.RData")
load(file="results_detailed_msm/survdiff_msm_swLtrunc_scen2.RData")
load(file="results_detailed_msm/weights_max_sw_scen2.RData")
load(file="results_detailed_msm/weights_max_swL_scen2.RData")
load(file="results_detailed_msm/weights_max_swtrunc_scen2.RData")
load(file="results_detailed_msm/weights_max_swLtrunc_scen2.RData")
load(file="results_detailed_msm/num_by_visit_msm_scen2.RData")
load(file="results_detailed_msm/prop_by_visit_msm_scen2.RData")
load(file="results_detailed_msm/num_alwaystreat_msm_scen2.RData")
load(file="results_detailed_msm/prop_alwaystreat_msm_scen2.RData")
load(file="results_detailed_msm/num_nevertreat_msm_scen2.RData")
load(file="results_detailed_msm/prop_nevertreat_msm_scen2.RData")
surv1_msm_sw_scen2=surv1_msm_sw
surv0_msm_sw_scen2=surv0_msm_sw
survdiff_msm_sw_scen2=survdiff_msm_sw
surv1_msm_swL_scen2=surv1_msm_swL
surv0_msm_swL_scen2=surv0_msm_swL
survdiff_msm_swL_scen2=survdiff_msm_swL
surv1_msm_swtrunc_scen2=surv1_msm_swtrunc
surv0_msm_swtrunc_scen2=surv0_msm_swtrunc
survdiff_msm_swtrunc_scen2=survdiff_msm_swtrunc
surv1_msm_swLtrunc_scen2=surv1_msm_swLtrunc
surv0_msm_swLtrunc_scen2=surv0_msm_swLtrunc
survdiff_msm_swLtrunc_scen2=survdiff_msm_swLtrunc
weights_msm_max_sw_scen2=weights_max_sw
weights_msm_max_swtrunc_scen2=weights_max_swtrunc
weights_msm_max_swL_scen2=weights_max_swL
weights_msm_max_swLtrunc_scen2=weights_max_swLtrunc
num_by_visit_msm_scen2=num_by_visit_msm
prop_by_visit_msm_scen2=prop_by_visit_msm
num_alwaystreat_msm_scen2=num_alwaystreat_msm
prop_alwaystreat_msm_scen2=prop_alwaystreat_msm
num_nevertreat_msm_scen2=num_nevertreat_msm
prop_nevertreat_msm_scen2=prop_nevertreat_msm
#-----------------------
#MSM-IPTW - scenario 3
load(file="results_detailed_msm/surv1_msm_sw_scen3.RData")
load(file="results_detailed_msm/surv0_msm_sw_scen3.RData")
load(file="results_detailed_msm/survdiff_msm_sw_scen3.RData")
load(file="results_detailed_msm/surv1_msm_swL_scen3.RData")
load(file="results_detailed_msm/surv0_msm_swL_scen3.RData")
load(file="results_detailed_msm/survdiff_msm_swL_scen3.RData")
load(file="results_detailed_msm/surv1_msm_swtrunc_scen3.RData")
load(file="results_detailed_msm/surv0_msm_swtrunc_scen3.RData")
load(file="results_detailed_msm/survdiff_msm_swtrunc_scen3.RData")
load(file="results_detailed_msm/surv1_msm_swLtrunc_scen3.RData")
load(file="results_detailed_msm/surv0_msm_swLtrunc_scen3.RData")
load(file="results_detailed_msm/survdiff_msm_swLtrunc_scen3.RData")
load(file="results_detailed_msm/weights_max_sw_scen3.RData")
load(file="results_detailed_msm/weights_max_swL_scen3.RData")
load(file="results_detailed_msm/weights_max_swtrunc_scen3.RData")
load(file="results_detailed_msm/weights_max_swLtrunc_scen3.RData")
load(file="results_detailed_msm/num_by_visit_msm_scen3.RData")
load(file="results_detailed_msm/prop_by_visit_msm_scen3.RData")
load(file="results_detailed_msm/num_alwaystreat_msm_scen3.RData")
load(file="results_detailed_msm/prop_alwaystreat_msm_scen3.RData")
load(file="results_detailed_msm/num_nevertreat_msm_scen3.RData")
load(file="results_detailed_msm/prop_nevertreat_msm_scen3.RData")
surv1_msm_sw_scen3=surv1_msm_sw
surv0_msm_sw_scen3=surv0_msm_sw
survdiff_msm_sw_scen3=survdiff_msm_sw
surv1_msm_swL_scen3=surv1_msm_swL
surv0_msm_swL_scen3=surv0_msm_swL
survdiff_msm_swL_scen3=survdiff_msm_swL
surv1_msm_swtrunc_scen3=surv1_msm_swtrunc
surv0_msm_swtrunc_scen3=surv0_msm_swtrunc
survdiff_msm_swtrunc_scen3=survdiff_msm_swtrunc
surv1_msm_swLtrunc_scen3=surv1_msm_swLtrunc
surv0_msm_swLtrunc_scen3=surv0_msm_swLtrunc
survdiff_msm_swLtrunc_scen3=survdiff_msm_swLtrunc
weights_msm_max_sw_scen3=weights_max_sw
weights_msm_max_swtrunc_scen3=weights_max_swtrunc
weights_msm_max_swL_scen3=weights_max_swL
weights_msm_max_swLtrunc_scen3=weights_max_swLtrunc
num_by_visit_msm_scen3=num_by_visit_msm
prop_by_visit_msm_scen3=prop_by_visit_msm
num_alwaystreat_msm_scen3=num_alwaystreat_msm
prop_alwaystreat_msm_scen3=prop_alwaystreat_msm
num_nevertreat_msm_scen3=num_nevertreat_msm
prop_nevertreat_msm_scen3=prop_nevertreat_msm
#-----------------------
#Sequential trials - scenario 1
load(file="results_detailed_seq/surv1_seq_sw_scen1.RData")
load(file="results_detailed_seq/surv0_seq_sw_scen1.RData")
load(file="results_detailed_seq/survdiff_seq_sw_scen1.RData")
load(file="results_detailed_seq/surv1_seq_swtrunc_scen1.RData")
load(file="results_detailed_seq/surv0_seq_swtrunc_scen1.RData")
load(file="results_detailed_seq/survdiff_seq_swtrunc_scen1.RData")
load(file="results_detailed_seq/weights_max_seq_sw_scen1.RData")
load(file="results_detailed_seq/weights_max_seq_swtrunc_scen1.RData")
load(file="results_detailed_seq/num_by_visit_seq_scen1.RData")
load(file="results_detailed_seq/prop_by_visit_seq_scen1.RData")
load(file="results_detailed_seq/num_alwaystreat_seq_scen1.RData")
load(file="results_detailed_seq/prop_alwaystreat_seq_scen1.RData")
load(file="results_detailed_seq/num_nevertreat_seq_scen1.RData")
load(file="results_detailed_seq/prop_nevertreat_seq_scen1.RData")
surv1_seq_sw_scen1=surv1_seq_sw
surv0_seq_sw_scen1=surv0_seq_sw
survdiff_seq_sw_scen1=survdiff_seq_sw
surv1_seq_swtrunc_scen1=surv1_seq_swtrunc
surv0_seq_swtrunc_scen1=surv0_seq_swtrunc
survdiff_seq_swtrunc_scen1=survdiff_seq_swtrunc
weights_seq_max_sw_scen1=weights_max_sw
weights_seq_max_swtrunc_scen1=weights_max_swtrunc
num_by_visit_seq_scen1=num_by_visit_seq
prop_by_visit_seq_scen1=prop_by_visit_seq
num_alwaystreat_seq_scen1=num_alwaystreat_seq
prop_alwaystreat_seq_scen1=prop_alwaystreat_seq
num_nevertreat_seq_scen1=num_nevertreat_seq
prop_nevertreat_seq_scen1=prop_nevertreat_seq
#-----------------------
#Sequential trials - scenario 2
load(file="results_detailed_seq/surv1_seq_sw_scen2.RData")
load(file="results_detailed_seq/surv0_seq_sw_scen2.RData")
load(file="results_detailed_seq/survdiff_seq_sw_scen2.RData")
load(file="results_detailed_seq/surv1_seq_swtrunc_scen2.RData")
load(file="results_detailed_seq/surv0_seq_swtrunc_scen2.RData")
load(file="results_detailed_seq/survdiff_seq_swtrunc_scen2.RData")
load(file="results_detailed_seq/weights_max_seq_sw_scen2.RData")
load(file="results_detailed_seq/weights_max_seq_swtrunc_scen2.RData")
load(file="results_detailed_seq/num_by_visit_seq_scen2.RData")
load(file="results_detailed_seq/prop_by_visit_seq_scen2.RData")
load(file="results_detailed_seq/num_alwaystreat_seq_scen2.RData")
load(file="results_detailed_seq/prop_alwaystreat_seq_scen2.RData")
load(file="results_detailed_seq/num_nevertreat_seq_scen2.RData")
load(file="results_detailed_seq/prop_nevertreat_seq_scen2.RData")
surv1_seq_sw_scen2=surv1_seq_sw
surv0_seq_sw_scen2=surv0_seq_sw
survdiff_seq_sw_scen2=survdiff_seq_sw
surv1_seq_swtrunc_scen2=surv1_seq_swtrunc
surv0_seq_swtrunc_scen2=surv0_seq_swtrunc
survdiff_seq_swtrunc_scen2=survdiff_seq_swtrunc
weights_seq_max_sw_scen2=weights_max_sw
weights_seq_max_swtrunc_scen2=weights_max_swtrunc
num_by_visit_seq_scen2=num_by_visit_seq
prop_by_visit_seq_scen2=prop_by_visit_seq
num_alwaystreat_seq_scen2=num_alwaystreat_seq
prop_alwaystreat_seq_scen2=prop_alwaystreat_seq
num_nevertreat_seq_scen2=num_nevertreat_seq
prop_nevertreat_seq_scen2=prop_nevertreat_seq
#-----------------------
#Sequential trials - scenario 3
load(file="results_detailed_seq/surv1_seq_sw_scen3.RData")
load(file="results_detailed_seq/surv0_seq_sw_scen3.RData")
load(file="results_detailed_seq/survdiff_seq_sw_scen3.RData")
load(file="results_detailed_seq/surv1_seq_swtrunc_scen3.RData")
load(file="results_detailed_seq/surv0_seq_swtrunc_scen3.RData")
load(file="results_detailed_seq/survdiff_seq_swtrunc_scen3.RData")
load(file="results_detailed_seq/weights_max_seq_sw_scen3.RData")
load(file="results_detailed_seq/weights_max_seq_swtrunc_scen3.RData")
load(file="results_detailed_seq/num_by_visit_seq_scen3.RData")
load(file="results_detailed_seq/prop_by_visit_seq_scen3.RData")
load(file="results_detailed_seq/num_alwaystreat_seq_scen3.RData")
load(file="results_detailed_seq/prop_alwaystreat_seq_scen3.RData")
load(file="results_detailed_seq/num_nevertreat_seq_scen3.RData")
load(file="results_detailed_seq/prop_nevertreat_seq_scen3.RData")
surv1_seq_sw_scen3=surv1_seq_sw
surv0_seq_sw_scen3=surv0_seq_sw
survdiff_seq_sw_scen3=survdiff_seq_sw
surv1_seq_swtrunc_scen3=surv1_seq_swtrunc
surv0_seq_swtrunc_scen3=surv0_seq_swtrunc
survdiff_seq_swtrunc_scen3=survdiff_seq_swtrunc
weights_seq_max_sw_scen3=weights_max_sw
weights_seq_max_swtrunc_scen3=weights_max_swtrunc
num_by_visit_seq_scen3=num_by_visit_seq
prop_by_visit_seq_scen3=prop_by_visit_seq
num_alwaystreat_seq_scen3=num_alwaystreat_seq
prop_alwaystreat_seq_scen3=prop_alwaystreat_seq
num_nevertreat_seq_scen3=num_nevertreat_seq
prop_nevertreat_seq_scen3=prop_nevertreat_seq