Bump gradle plugin version #25
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| name: Nextflow Plugin & Python Package CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| NXF_OFFLINE: 'true' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '17' | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: latest | |
| - name: Install Nextflow | |
| run: | | |
| wget -qO- https://get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| nextflow -version | |
| - name: Install Python build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build | |
| - name: Test versions | |
| run: | | |
| # Get plugin version from build.gradle | |
| PLUGIN_VERSION=$(grep '^version =' build.gradle | cut -d'=' -f2 | tr -d " '") | |
| # Get python package version from py/pyproject.toml | |
| PYTHON_VERSION=$(grep 'version =' py/pyproject.toml | cut -d'=' -f2 | tr -d ' "') | |
| if [ "$PLUGIN_VERSION" != "$PYTHON_VERSION" ]; then | |
| echo "Plugin version mismatch: ${PYTHON_VERSION@Q}, ${PLUGIN_VERSION@Q}" | |
| exit 1 | |
| fi | |
| echo "PLUGIN_VERSION=$PLUGIN_VERSION" >> $GITHUB_ENV | |
| - name: Build Nextflow plugin | |
| run: make assemble | |
| - name: Move plugin to ~/.nextflow/plugins | |
| run: | | |
| mkdir -p ~/.nextflow/plugins | |
| unzip build/distributions/nf-python-${{ env.PLUGIN_VERSION }}.zip -d ~/.nextflow/plugins/nf-python-${{ env.PLUGIN_VERSION }} | |
| - name: Run Nextflow workflow test | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| pushd test/test-datatypes | |
| nextflow run test_flow.nf -plugins "nf-python@${{ env.PLUGIN_VERSION }}" | |
| popd | |
| pushd test/test-conda | |
| nextflow run test_conda_config.nf -plugins "nf-python@${{ env.PLUGIN_VERSION }}" -config conda.config | |
| nextflow run test_conda_inline.nf -plugins "nf-python@${{ env.PLUGIN_VERSION }}" | |
| popd | |
| pushd test/test-executable | |
| nextflow run test_executable_config.nf -plugins "nf-python@${{ env.PLUGIN_VERSION }}" -config executable.config | |
| nextflow run test_executable_inline.nf -plugins "nf-python@${{ env.PLUGIN_VERSION }}" | |
| popd |