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It looks like we're hard-coded for hg19 right now:
docker_igv_js/context/on_startup.py
Lines 7 to 14 in a0a8680
| with open("data/input.json") as f: | |
| config_data = json.loads(f.read()) | |
| tracks = [] | |
| assembly = "hg19" | |
| url_base = "https://s3.amazonaws.com/data.cloud.refinery-platform.org/data/igv-reference/{}/".format( | |
| assembly | |
| ) |
but it shouldn't be hard to
- upload genome reference files to s3
- update this to actually read the input.json
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