diff --git a/scripts/mutation-evosuite.sh b/scripts/mutation-evosuite.sh
index 8f03e175..4e45924f 100755
--- a/scripts/mutation-evosuite.sh
+++ b/scripts/mutation-evosuite.sh
@@ -23,7 +23,7 @@
 #------------------------------------------------------------------------------
 # Options (command-line arguments):
 #------------------------------------------------------------------------------
-USAGE_STRING="usage: mutation-evosuite.sh [-o RESULTS_CSV] [-t total_time] [-c time_per_class] [-n num_iterations] [-r] [-v] [-h] TEST-CASE-NAME
+USAGE_STRING="usage: mutation-evosuite.sh [-o RESULTS_CSV] [-t total_time] [-c time_per_class] [-n num_iterations] [-s] [-r] [-v] [-h] TEST-CASE-NAME
   -o N  Write experiment results to this CSV file (N should end in '.csv').
         If the file does not exist, a header row will be created automatically.
         Paths are not allowed; only a filename may be given.
@@ -31,6 +31,7 @@ USAGE_STRING="usage: mutation-evosuite.sh [-o RESULTS_CSV] [-t total_time] [-c t
   -c N  Per-class time limit (in seconds, default: 2s/class).
         Mutually exclusive with -t.
   -n N  Number of iterations to run the experiment (default: 1).
+  -s    Skip mutation analysis (only run test generation and coverage).
   -r    Redirect logs and diagnostics to results/result/mutation_output.txt.
   -v    Enables verbose mode.
   -h    Displays this help message.
@@ -83,10 +84,11 @@ fi
 NUM_LOOP=1      # Number of experiment runs (10 in GRT paper)
 VERBOSE=0       # Verbose option
 REDIRECT=0      # Redirect output to mutation_output.txt
+SKIP_MUTATION=0 # Skip mutation analysis
 UUID=$(uuidgen) # Generate a unique identifier per instance
 
 # Parse command-line arguments
-while getopts ":hvro:t:c:n:" opt; do
+while getopts ":hvrso:t:c:n:" opt; do
   case ${opt} in
     h)
       # Display help message
@@ -101,6 +103,10 @@ while getopts ":hvro:t:c:n:" opt; do
       # Redirect output to a log file
       REDIRECT=1
       ;;
+    s)
+      # Skip mutation analysis
+      SKIP_MUTATION=1
+      ;;
     o)
       RESULTS_CSV="$OPTARG"
       ;;
@@ -490,6 +496,13 @@ for i in $(seq 1 "$NUM_LOOP"); do
   "$MAJOR_HOME"/bin/ant -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dmutator="mml:$MAJOR_HOME/mml/all.mml.bin" -Dsrc="$JAVA_SRC_DIR" -Dtargetdir="$COVERAGE_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" compile.mutation
   "$MAJOR_HOME"/bin/ant -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dmutator="mml:$MAJOR_HOME/mml/all.mml.bin" -Dsrc="$JAVA_SRC_DIR" -Dtargetdir="$COVERAGE_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" compile.jacoco
 
+  PYTHON_EXECUTABLE=$(command -v python3 2> /dev/null || command -v python 2> /dev/null)
+  if [ -z "$PYTHON_EXECUTABLE" ]; then
+    echo "Error: Python is not installed." >&2
+    exit 2
+  fi
+  "$PYTHON_EXECUTABLE" "$SCRIPT_DIR"/trim_mutants.py "$RESULT_DIR/mutants.log"
+
   echo
   echo "Compiling tests..."
   if [[ "$VERBOSE" -eq 1 ]]; then
@@ -530,28 +543,30 @@ for i in $(seq 1 "$NUM_LOOP"); do
   # resulting in a lot of methods being excluded from mutation analysis.
   # We use a Python script to convert the tests.
   if [ "$SUBJECT_PROGRAM" == "jdom-1.0" ]; then
-    PYTHON_EXECUTABLE=$(command -v python3 2> /dev/null || command -v python 2> /dev/null)
-    if [ -z "$PYTHON_EXECUTABLE" ]; then
-      echo "Error: Python is not installed." >&2
-      exit 2
-    fi
     "$PYTHON_EXECUTABLE" "$SCRIPT_DIR"/convert_test_runners.py "$TEST_DIRECTORY" --mode evosuite-to-randoop
   fi
 
-  echo
-  echo "Running tests with mutation analysis..."
-  if [[ "$VERBOSE" -eq 1 ]]; then
-    echo command:
-    echo "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
+  # Run mutation analysis unless -s flag is set
+  if [[ "$SKIP_MUTATION" -eq 0 ]]; then
+    echo
+    echo "Running tests with mutation analysis..."
+    if [[ "$VERBOSE" -eq 1 ]]; then
+      echo command:
+      echo "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
+    fi
+    echo
+    "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
+
+    # Calculate Mutation Score
+    mutants_generated=$(awk -F, 'NR==2 {print $2}' "$RESULT_DIR"/summary.csv)
+    mutants_killed=$(awk -F, 'NR==2 {print $4}' "$RESULT_DIR"/summary.csv)
+    mutation_score=$(echo "scale=4; $mutants_killed / $mutants_generated * 100" | bc)
+    mutation_score=$(printf "%.2f" "$mutation_score")
+  else
+    echo
+    echo "Skipping mutation analysis (use -s flag)."
+    mutation_score="N/A"
   fi
-  echo
-  "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
-
-  # Calculate Mutation Score
-  mutants_generated=$(awk -F, 'NR==2 {print $1}' "$RESULT_DIR"/summary.csv)
-  mutants_killed=$(awk -F, 'NR==2 {print $4}' "$RESULT_DIR"/summary.csv)
-  mutation_score=$(echo "scale=4; $mutants_killed / $mutants_generated * 100" | bc)
-  mutation_score=$(printf "%.2f" "$mutation_score")
 
   echo "Instruction Coverage: $instruction_coverage%"
   echo "Branch Coverage: $branch_coverage%"
diff --git a/scripts/mutation-randoop.sh b/scripts/mutation-randoop.sh
index 3bd90d3f..497aea2f 100755
--- a/scripts/mutation-randoop.sh
+++ b/scripts/mutation-randoop.sh
@@ -23,7 +23,7 @@
 #------------------------------------------------------------------------------
 # Options (command-line arguments):
 #------------------------------------------------------------------------------
-USAGE_STRING="usage: mutation-randoop.sh [-f features] [-o RESULTS_CSV] [-t total_time] [-c time_per_class] [-n num_iterations] [-r] [-v] [-h] TEST-CASE-NAME
+USAGE_STRING="usage: mutation-randoop.sh [-f features] [-o RESULTS_CSV] [-t total_time] [-c time_per_class] [-n num_iterations] [-s] [-r] [-v] [-h] TEST-CASE-NAME
   -f    Specify the Randoop features to use.
         Available features: BASELINE, BLOODHOUND, ORIENTEERING, DETECTIVE, GRT_FUZZING, ELEPHANT_BRAIN, CONSTANT_MINING.
         example usage: -f BASELINE,BLOODHOUND
@@ -34,6 +34,7 @@ USAGE_STRING="usage: mutation-randoop.sh [-f features] [-o RESULTS_CSV] [-t tota
   -c N  Per-class time limit (in seconds, default: 2s/class).
         Mutually exclusive with -t.
   -n N  Number of iterations to run the experiment (default: 1).
+  -s    Skip mutation analysis (only run test generation and coverage).
   -r    Redirect logs and diagnostics to results/result/mutation_output.txt.
   -v    Enables verbose mode.
   -h    Displays this help message.
@@ -92,10 +93,11 @@ fi
 NUM_LOOP=1      # Number of experiment runs (10 in GRT paper)
 VERBOSE=0       # Verbose option
 REDIRECT=0      # Redirect output to mutation_output.txt
+SKIP_MUTATION=0 # Skip mutation analysis
 UUID=$(uuidgen) # Generate a unique identifier per instance
 
 # Parse command-line arguments
-while getopts ":hvrf:o:t:c:n:" opt; do
+while getopts ":hvrsf:o:t:c:n:" opt; do
   case ${opt} in
     h)
       # Display help message
@@ -110,6 +112,10 @@ while getopts ":hvrf:o:t:c:n:" opt; do
       # Redirect output to a log file
       REDIRECT=1
       ;;
+    s)
+      # Skip mutation analysis
+      SKIP_MUTATION=1
+      ;;
     f)
       FEATURES_OPT="$OPTARG"
       ;;
@@ -161,10 +167,10 @@ declare -A FEATURE_FLAGS
 FEATURE_FLAGS=(
   ["BLOODHOUND"]="--method-selection=BLOODHOUND"
   ["ORIENTEERING"]="--input-selection=ORIENTEERING"
-  ["DETECTIVE"]="--demand-driven=true"
+  ["DETECTIVE"]="--call-non-sut-methods=true"
   ["GRT_FUZZING"]="--grt-fuzzing=true"
   ["ELEPHANT_BRAIN"]="--cast-to-run-time-type=true"
-  ["CONSTANT_MINING"]="--constant-mining=true"
+  ["CONSTANT_MINING"]="--literal-tfidf=true --literal-tfidf-probability=1.0 --include-superclass-literals=true"
   ["BASELINE"]=""
 )
 
@@ -174,7 +180,10 @@ for feat in "${RANDOOP_FEATURES[@]}"; do
   if [[ "${FEATURE_FLAGS[$feat]+exists}" ]]; then
     flag="${FEATURE_FLAGS[$feat]}"
     if [[ -n "$flag" ]]; then
-      EXPANDED_FEATURE_FLAGS+=("$flag")
+      # Split multi-argument feature strings into separate array entries
+      # shellcheck disable=SC2206
+      split_flags=($flag)
+      EXPANDED_FEATURE_FLAGS+=("${split_flags[@]}")
     fi
   else
     echo "${SCRIPT_NAME}: error: unknown feature '$feat'"
@@ -610,6 +619,13 @@ for i in $(seq 1 "$NUM_LOOP"); do
   "$MAJOR_HOME"/bin/ant -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dmutator="mml:$MAJOR_HOME/mml/all.mml.bin" -Dsrc="$JAVA_SRC_DIR" -Dtargetdir="$COVERAGE_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" compile.mutation
   "$MAJOR_HOME"/bin/ant -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dmutator="mml:$MAJOR_HOME/mml/all.mml.bin" -Dsrc="$JAVA_SRC_DIR" -Dtargetdir="$COVERAGE_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" compile.jacoco
 
+  PYTHON_EXECUTABLE=$(command -v python3 2> /dev/null || command -v python 2> /dev/null)
+  if [ -z "$PYTHON_EXECUTABLE" ]; then
+    echo "Error: Python is not installed." >&2
+    exit 2
+  fi
+  "$PYTHON_EXECUTABLE" "$SCRIPT_DIR"/trim_mutants.py "$RESULT_DIR/mutants.log"
+
   echo
   echo "Compiling tests..."
   if [[ "$VERBOSE" -eq 1 ]]; then
@@ -653,28 +669,30 @@ for i in $(seq 1 "$NUM_LOOP"); do
   # proper isolation and compatibility for accurate mutant coverage.
 
   if [ "$SUBJECT_PROGRAM" == "hamcrest-core-1.3" ]; then
-    PYTHON_EXECUTABLE=$(command -v python3 2> /dev/null || command -v python 2> /dev/null)
-    if [ -z "$PYTHON_EXECUTABLE" ]; then
-      echo "Error: Python is not installed." >&2
-      exit 1
-    fi
     "$PYTHON_EXECUTABLE" "$SCRIPT_DIR"/convert_test_runners.py "$TEST_DIRECTORY" --mode randoop-to-evosuite
   fi
 
-  echo
-  echo "Running tests with mutation analysis..."
-  if [[ "$VERBOSE" -eq 1 ]]; then
-    echo command:
-    echo "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
+  # Run mutation analysis unless -s flag is set
+  if [[ "$SKIP_MUTATION" -eq 0 ]]; then
+    echo
+    echo "Running tests with mutation analysis..."
+    if [[ "$VERBOSE" -eq 1 ]]; then
+      echo command:
+      echo "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
+    fi
+    echo
+    "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
+
+    # Calculate Mutation Score
+    mutants_generated=$(awk -F, 'NR==2 {print $2}' "$RESULT_DIR"/summary.csv)
+    mutants_killed=$(awk -F, 'NR==2 {print $4}' "$RESULT_DIR"/summary.csv)
+    mutation_score=$(echo "scale=4; $mutants_killed / $mutants_generated * 100" | bc)
+    mutation_score=$(printf "%.2f" "$mutation_score")
+  else
+    echo
+    echo "Skipping mutation analysis (use -s flag)."
+    mutation_score="N/A"
   fi
-  echo
-  "$MAJOR_HOME"/bin/"$ANT" -f "$SCRIPT_DIR"/program-config/"$1"/${buildfile} -Dbasedir="$SCRIPT_DIR" -Dbindir="$SCRIPT_DIR/build/bin/$FILE_SUFFIX" -Dresultdir="$RESULT_DIR" -Dtest="$TEST_DIRECTORY" -Dlibdir="$SCRIPT_DIR/build/lib/$UUID" mutation.test
-
-  # Calculate Mutation Score
-  mutants_generated=$(awk -F, 'NR==2 {print $1}' "$RESULT_DIR"/summary.csv)
-  mutants_killed=$(awk -F, 'NR==2 {print $4}' "$RESULT_DIR"/summary.csv)
-  mutation_score=$(echo "scale=4; $mutants_killed / $mutants_generated * 100" | bc)
-  mutation_score=$(printf "%.2f" "$mutation_score")
 
   echo "Instruction Coverage: $instruction_coverage%"
   echo "Branch Coverage: $branch_coverage%"
diff --git a/scripts/program-config/ClassViewer-5.0.5b/build-evosuite.xml b/scripts/program-config/ClassViewer-5.0.5b/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/ClassViewer-5.0.5b/build-evosuite.xml
+++ b/scripts/program-config/ClassViewer-5.0.5b/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/ClassViewer-5.0.5b/build-randoop.xml b/scripts/program-config/ClassViewer-5.0.5b/build-randoop.xml
index e5e856ee..5052f683 100644
--- a/scripts/program-config/ClassViewer-5.0.5b/build-randoop.xml
+++ b/scripts/program-config/ClassViewer-5.0.5b/build-randoop.xml
@@ -83,6 +83,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/JSAP-2.1/build-evosuite.xml b/scripts/program-config/JSAP-2.1/build-evosuite.xml
index caf99a9e..eb52d87c 100644
--- a/scripts/program-config/JSAP-2.1/build-evosuite.xml
+++ b/scripts/program-config/JSAP-2.1/build-evosuite.xml
@@ -87,6 +87,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/JSAP-2.1/build-randoop.xml b/scripts/program-config/JSAP-2.1/build-randoop.xml
index 4c3c75e0..ae6018c6 100644
--- a/scripts/program-config/JSAP-2.1/build-randoop.xml
+++ b/scripts/program-config/JSAP-2.1/build-randoop.xml
@@ -86,6 +86,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/a4j-1.0b/build-evosuite.xml b/scripts/program-config/a4j-1.0b/build-evosuite.xml
index cd38c317..9c24fd31 100644
--- a/scripts/program-config/a4j-1.0b/build-evosuite.xml
+++ b/scripts/program-config/a4j-1.0b/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/a4j-1.0b/build-randoop.xml b/scripts/program-config/a4j-1.0b/build-randoop.xml
index 5bd2a92b..a8d98830 100644
--- a/scripts/program-config/a4j-1.0b/build-randoop.xml
+++ b/scripts/program-config/a4j-1.0b/build-randoop.xml
@@ -81,6 +81,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/asm-5.0.1/build-evosuite.xml b/scripts/program-config/asm-5.0.1/build-evosuite.xml
index 7a0026cf..f18f8750 100644
--- a/scripts/program-config/asm-5.0.1/build-evosuite.xml
+++ b/scripts/program-config/asm-5.0.1/build-evosuite.xml
@@ -85,6 +85,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/asm-5.0.1/build-randoop.xml b/scripts/program-config/asm-5.0.1/build-randoop.xml
index 83387e6d..d951e78b 100644
--- a/scripts/program-config/asm-5.0.1/build-randoop.xml
+++ b/scripts/program-config/asm-5.0.1/build-randoop.xml
@@ -84,6 +84,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/bcel-5.2/build-evosuite.xml b/scripts/program-config/bcel-5.2/build-evosuite.xml
index fbc506fe..f43f2661 100644
--- a/scripts/program-config/bcel-5.2/build-evosuite.xml
+++ b/scripts/program-config/bcel-5.2/build-evosuite.xml
@@ -85,6 +85,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/bcel-5.2/build-randoop.xml b/scripts/program-config/bcel-5.2/build-randoop.xml
index 3f265342..31bf291f 100644
--- a/scripts/program-config/bcel-5.2/build-randoop.xml
+++ b/scripts/program-config/bcel-5.2/build-randoop.xml
@@ -85,6 +85,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-cli-1.2/build-evosuite.xml b/scripts/program-config/commons-cli-1.2/build-evosuite.xml
index cbfc801f..d906458c 100644
--- a/scripts/program-config/commons-cli-1.2/build-evosuite.xml
+++ b/scripts/program-config/commons-cli-1.2/build-evosuite.xml
@@ -1,131 +1,132 @@
-<project name="Script" default="compile" basedir="${basedir}" xmlns:jacoco="antlib:org.jacoco.ant">
-
-<!-- ##############################################
-      Path to major.jar and (optional) mml file
-      Use -Dmutator="mml:<path-to-mml-file>" to set a
-      particular (compiled) mml-file.
-     ############################################## -->
-    <property name="major.jar" value="${basedir}/build/major/lib/major.jar"/>
-    <property name="mutator" value=""/>
-    <property name="plugin" value="-Xplugin:MajorPlugin ${mutator}"/>
-
-    <path id="project.classpath">
-        <pathelement location="${basedir}/build/evosuite-standalone-runtime-1.2.0.jar"/>
-        <pathelement location="${basedir}/build/junit-4.12.jar"/>
-        <pathelement location="${basedir}/build/hamcrest-core-1.3.jar"/>
-        <fileset dir="${libdir}" includes="*.jar"/>
-    </path>
-
-<!-- Import JaCoCo Ant tasks -->
-    <taskdef uri="antlib:org.jacoco.ant" resource="org/jacoco/ant/antlib.xml">
-        <classpath path="${basedir}/build/jacocoant.jar"/>
-    </taskdef>
-
-<!-- Target to initialize build -->
-    <target name="init">
-        <mkdir dir="${bindir}"/>
-        <mkdir dir="${targetdir}/classes"/>
-        <mkdir dir="${targetdir}/test-classes"/>
-    </target>
-
-<!-- Target to compile the project (for mutation analysis) -->
-    <target name="compile.mutation" depends="init" description="Compile">
-        <javac includeantruntime="true" 
-               srcdir="${src}"
-               destdir="${bindir}"
-               debug="yes">
-            <classpath>
-                <pathelement location="${major.jar}"/>
-                <path refid="project.classpath"/>
-            </classpath>
-            <compilerarg value="${plugin}"/>
-        </javac>
-    </target>
-
-<!-- Target to compile the project (for Jacoco instrumentation) -->
-    <target name="compile.jacoco" depends="init" description="Compile">
-        <javac includeantruntime="true" 
-               srcdir="${src}"
-               destdir="${targetdir}/classes"
-               debug="yes">
-            <classpath refid="project.classpath"/>
-        </javac>
-    </target>
-
-<!-- Target to compile the test suite (for mutation analysis) -->
-    <target name="compile.mutation.tests" description="Compile all tests">
-        <javac includeantruntime="true"
-               srcdir="${test}"
-               destdir="${bindir}"
-               debug="yes">
-               <classpath refid="project.classpath"/>
-        </javac>
-    </target>
-
-<!-- Target to compile the test suite (for Jacoco instrumentation) -->
-    <target name="compile.jacoco.tests" description="Compile all tests">
-        <javac includeantruntime="true"
-               srcdir="${test}"
-               destdir="${targetdir}/test-classes"
-               debug="yes">
-               <classpath refid="project.classpath"/>
-        </javac>
-    </target>
-
-
-<!-- The adapted mutation test target -->
-    <target name="mutation.test" description="Run mutation analysis for all unit test cases">
-        <echo message="Running mutation analysis ..."/>
-        <junit printsummary="false"
-               showoutput="false"
-               mutationAnalysis="true"
-               excludeFailingTests="false"
-               testOrder="sort_methods"
-               serializedMapsFile="${resultdir}/preprocessing.ser"
-               mutantsLogFile="${resultdir}/mutants.log"
-               summaryFile="${resultdir}/summary.csv"
-               mutantDetailsFile="${resultdir}/details.csv"
-               covMapFile="${resultdir}/covMap.csv"
-               testMapFile="${resultdir}/testMap.csv"
-               killMapFile="${resultdir}/killMap.csv">
-            <classpath>
-                <pathelement location="${bindir}"/>
-                <path refid="project.classpath"/>
-            </classpath>
-            <batchtest fork="false">
-                <fileset dir="${test}">
-                    <include name="**/*Test*.java" />
-                    <exclude name="**/*_scaffolding.java" />
-                </fileset>
-            </batchtest>
-        </junit>
-    </target>
-
-    <target name="test" description="Run all unit test cases">
-        <echo message="Instrumenting classes for offline instrumentation ..."/>
-        <jacoco:instrument destdir="${targetdir}/instrument-classes">
-            <fileset dir="${targetdir}/classes" includes="**/*.class" />
-        </jacoco:instrument>
-
-        <echo message="Running unit tests..."/>
-        <junit  printsummary="true"
-                showoutput="false"
-                haltonfailure="false"
-                fork="true" forkmode="once">
-            <formatter type="plain" usefile="false" />
-            <classpath>
-                <pathelement location="${targetdir}/instrument-classes"/>
-                <pathelement location="${targetdir}/test-classes"/>
-                <pathelement location="${basedir}/build/jacocoagent.jar"/>
-                <path refid="project.classpath"/>
-            </classpath>
-            <batchtest>
-                <fileset dir="${test}">
-                    <include name="**/*Test*.java" />
-                    <exclude name="**/*_scaffolding.java" />
-                </fileset>
-            </batchtest>
-        </junit>
-    </target>
-    
-</project>
+<project name="Script" default="compile" basedir="${basedir}" xmlns:jacoco="antlib:org.jacoco.ant">
+
+<!-- ##############################################
+      Path to major.jar and (optional) mml file
+      Use -Dmutator="mml:<path-to-mml-file>" to set a
+      particular (compiled) mml-file.
+     ############################################## -->
+    <property name="major.jar" value="${basedir}/build/major/lib/major.jar"/>
+    <property name="mutator" value=""/>
+    <property name="plugin" value="-Xplugin:MajorPlugin ${mutator}"/>
+
+    <path id="project.classpath">
+        <pathelement location="${basedir}/build/evosuite-standalone-runtime-1.2.0.jar"/>
+        <pathelement location="${basedir}/build/junit-4.12.jar"/>
+        <pathelement location="${basedir}/build/hamcrest-core-1.3.jar"/>
+        <fileset dir="${libdir}" includes="*.jar"/>
+    </path>
+
+<!-- Import JaCoCo Ant tasks -->
+    <taskdef uri="antlib:org.jacoco.ant" resource="org/jacoco/ant/antlib.xml">
+        <classpath path="${basedir}/build/jacocoant.jar"/>
+    </taskdef>
+
+<!-- Target to initialize build -->
+    <target name="init">
+        <mkdir dir="${bindir}"/>
+        <mkdir dir="${targetdir}/classes"/>
+        <mkdir dir="${targetdir}/test-classes"/>
+    </target>
+
+<!-- Target to compile the project (for mutation analysis) -->
+    <target name="compile.mutation" depends="init" description="Compile">
+        <javac includeantruntime="true" 
+               srcdir="${src}"
+               destdir="${bindir}"
+               debug="yes">
+            <classpath>
+                <pathelement location="${major.jar}"/>
+                <path refid="project.classpath"/>
+            </classpath>
+            <compilerarg value="${plugin}"/>
+        </javac>
+    </target>
+
+<!-- Target to compile the project (for Jacoco instrumentation) -->
+    <target name="compile.jacoco" depends="init" description="Compile">
+        <javac includeantruntime="true" 
+               srcdir="${src}"
+               destdir="${targetdir}/classes"
+               debug="yes">
+            <classpath refid="project.classpath"/>
+        </javac>
+    </target>
+
+<!-- Target to compile the test suite (for mutation analysis) -->
+    <target name="compile.mutation.tests" description="Compile all tests">
+        <javac includeantruntime="true"
+               srcdir="${test}"
+               destdir="${bindir}"
+               debug="yes">
+               <classpath refid="project.classpath"/>
+        </javac>
+    </target>
+
+<!-- Target to compile the test suite (for Jacoco instrumentation) -->
+    <target name="compile.jacoco.tests" description="Compile all tests">
+        <javac includeantruntime="true"
+               srcdir="${test}"
+               destdir="${targetdir}/test-classes"
+               debug="yes">
+               <classpath refid="project.classpath"/>
+        </javac>
+    </target>
+
+
+<!-- The adapted mutation test target -->
+    <target name="mutation.test" description="Run mutation analysis for all unit test cases">
+        <echo message="Running mutation analysis ..."/>
+        <junit printsummary="false"
+               showoutput="false"
+               mutationAnalysis="true"
+               excludeFailingTests="false"
+               testOrder="sort_methods"
+               serializedMapsFile="${resultdir}/preprocessing.ser"
+               mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
+               summaryFile="${resultdir}/summary.csv"
+               mutantDetailsFile="${resultdir}/details.csv"
+               covMapFile="${resultdir}/covMap.csv"
+               testMapFile="${resultdir}/testMap.csv"
+               killMapFile="${resultdir}/killMap.csv">
+            <classpath>
+                <pathelement location="${bindir}"/>
+                <path refid="project.classpath"/>
+            </classpath>
+            <batchtest fork="false">
+                <fileset dir="${test}">
+                    <include name="**/*Test*.java" />
+                    <exclude name="**/*_scaffolding.java" />
+                </fileset>
+            </batchtest>
+        </junit>
+    </target>
+
+    <target name="test" description="Run all unit test cases">
+        <echo message="Instrumenting classes for offline instrumentation ..."/>
+        <jacoco:instrument destdir="${targetdir}/instrument-classes">
+            <fileset dir="${targetdir}/classes" includes="**/*.class" />
+        </jacoco:instrument>
+
+        <echo message="Running unit tests..."/>
+        <junit  printsummary="true"
+                showoutput="false"
+                haltonfailure="false"
+                fork="true" forkmode="once">
+            <formatter type="plain" usefile="false" />
+            <classpath>
+                <pathelement location="${targetdir}/instrument-classes"/>
+                <pathelement location="${targetdir}/test-classes"/>
+                <pathelement location="${basedir}/build/jacocoagent.jar"/>
+                <path refid="project.classpath"/>
+            </classpath>
+            <batchtest>
+                <fileset dir="${test}">
+                    <include name="**/*Test*.java" />
+                    <exclude name="**/*_scaffolding.java" />
+                </fileset>
+            </batchtest>
+        </junit>
+    </target>
+    
+</project>
diff --git a/scripts/program-config/commons-cli-1.2/build-randoop.xml b/scripts/program-config/commons-cli-1.2/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/commons-cli-1.2/build-randoop.xml
+++ b/scripts/program-config/commons-cli-1.2/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-codec-1.9/build-evosuite.xml b/scripts/program-config/commons-codec-1.9/build-evosuite.xml
index 1f5e005b..fd8cb636 100644
--- a/scripts/program-config/commons-codec-1.9/build-evosuite.xml
+++ b/scripts/program-config/commons-codec-1.9/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-codec-1.9/build-randoop.xml b/scripts/program-config/commons-codec-1.9/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/commons-codec-1.9/build-randoop.xml
+++ b/scripts/program-config/commons-codec-1.9/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-collections4-4.0/build-evosuite.xml b/scripts/program-config/commons-collections4-4.0/build-evosuite.xml
index fa34eaff..f14280f6 100644
--- a/scripts/program-config/commons-collections4-4.0/build-evosuite.xml
+++ b/scripts/program-config/commons-collections4-4.0/build-evosuite.xml
@@ -87,6 +87,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-collections4-4.0/build-randoop.xml b/scripts/program-config/commons-collections4-4.0/build-randoop.xml
index 96e060db..1f2b230e 100644
--- a/scripts/program-config/commons-collections4-4.0/build-randoop.xml
+++ b/scripts/program-config/commons-collections4-4.0/build-randoop.xml
@@ -86,6 +86,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-compress-1.8/build-evosuite.xml b/scripts/program-config/commons-compress-1.8/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/commons-compress-1.8/build-evosuite.xml
+++ b/scripts/program-config/commons-compress-1.8/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-compress-1.8/build-randoop.xml b/scripts/program-config/commons-compress-1.8/build-randoop.xml
index 5bd2a92b..a8d98830 100644
--- a/scripts/program-config/commons-compress-1.8/build-randoop.xml
+++ b/scripts/program-config/commons-compress-1.8/build-randoop.xml
@@ -81,6 +81,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-lang3-3.0/build-evosuite.xml b/scripts/program-config/commons-lang3-3.0/build-evosuite.xml
index ac9aa599..22fed805 100644
--- a/scripts/program-config/commons-lang3-3.0/build-evosuite.xml
+++ b/scripts/program-config/commons-lang3-3.0/build-evosuite.xml
@@ -89,6 +89,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-lang3-3.0/build-randoop.xml b/scripts/program-config/commons-lang3-3.0/build-randoop.xml
index 273edb19..e39c1027 100644
--- a/scripts/program-config/commons-lang3-3.0/build-randoop.xml
+++ b/scripts/program-config/commons-lang3-3.0/build-randoop.xml
@@ -88,6 +88,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-math3-3.2/build-evosuite.xml b/scripts/program-config/commons-math3-3.2/build-evosuite.xml
index 23c6ba5b..25b291f8 100644
--- a/scripts/program-config/commons-math3-3.2/build-evosuite.xml
+++ b/scripts/program-config/commons-math3-3.2/build-evosuite.xml
@@ -87,6 +87,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-math3-3.2/build-randoop.xml b/scripts/program-config/commons-math3-3.2/build-randoop.xml
index 335e590e..a785024a 100644
--- a/scripts/program-config/commons-math3-3.2/build-randoop.xml
+++ b/scripts/program-config/commons-math3-3.2/build-randoop.xml
@@ -86,6 +86,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-primitives-1.0/build-evosuite.xml b/scripts/program-config/commons-primitives-1.0/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/commons-primitives-1.0/build-evosuite.xml
+++ b/scripts/program-config/commons-primitives-1.0/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/commons-primitives-1.0/build-randoop.xml b/scripts/program-config/commons-primitives-1.0/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/commons-primitives-1.0/build-randoop.xml
+++ b/scripts/program-config/commons-primitives-1.0/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/dcParseArgs-10.2008/build-evosuite.xml b/scripts/program-config/dcParseArgs-10.2008/build-evosuite.xml
index f6be1989..1663387b 100644
--- a/scripts/program-config/dcParseArgs-10.2008/build-evosuite.xml
+++ b/scripts/program-config/dcParseArgs-10.2008/build-evosuite.xml
@@ -87,6 +87,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/dcParseArgs-10.2008/build-randoop.xml b/scripts/program-config/dcParseArgs-10.2008/build-randoop.xml
index 3022c8d0..c0f54f75 100644
--- a/scripts/program-config/dcParseArgs-10.2008/build-randoop.xml
+++ b/scripts/program-config/dcParseArgs-10.2008/build-randoop.xml
@@ -86,6 +86,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/easymock-3.2/build-evosuite.xml b/scripts/program-config/easymock-3.2/build-evosuite.xml
index 5fd5f0dc..c745bb04 100644
--- a/scripts/program-config/easymock-3.2/build-evosuite.xml
+++ b/scripts/program-config/easymock-3.2/build-evosuite.xml
@@ -82,6 +82,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/easymock-3.2/build-randoop.xml b/scripts/program-config/easymock-3.2/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/easymock-3.2/build-randoop.xml
+++ b/scripts/program-config/easymock-3.2/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/fixsuite-r48/build-evosuite.xml b/scripts/program-config/fixsuite-r48/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/fixsuite-r48/build-evosuite.xml
+++ b/scripts/program-config/fixsuite-r48/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/fixsuite-r48/build-randoop.xml b/scripts/program-config/fixsuite-r48/build-randoop.xml
index e874e90b..8e870772 100644
--- a/scripts/program-config/fixsuite-r48/build-randoop.xml
+++ b/scripts/program-config/fixsuite-r48/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/guava-16.0.1/build-evosuite.xml b/scripts/program-config/guava-16.0.1/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/guava-16.0.1/build-evosuite.xml
+++ b/scripts/program-config/guava-16.0.1/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/guava-16.0.1/build-randoop.xml b/scripts/program-config/guava-16.0.1/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/guava-16.0.1/build-randoop.xml
+++ b/scripts/program-config/guava-16.0.1/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/hamcrest-core-1.3/build-evosuite.xml b/scripts/program-config/hamcrest-core-1.3/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/hamcrest-core-1.3/build-evosuite.xml
+++ b/scripts/program-config/hamcrest-core-1.3/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/hamcrest-core-1.3/build-randoop.xml b/scripts/program-config/hamcrest-core-1.3/build-randoop.xml
index 02aee272..bea9e796 100644
--- a/scripts/program-config/hamcrest-core-1.3/build-randoop.xml
+++ b/scripts/program-config/hamcrest-core-1.3/build-randoop.xml
@@ -84,6 +84,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/javassist-3.19/build-evosuite.xml b/scripts/program-config/javassist-3.19/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/javassist-3.19/build-evosuite.xml
+++ b/scripts/program-config/javassist-3.19/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/javassist-3.19/build-randoop.xml b/scripts/program-config/javassist-3.19/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/javassist-3.19/build-randoop.xml
+++ b/scripts/program-config/javassist-3.19/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/javax.mail-1.5.1/build-evosuite.xml b/scripts/program-config/javax.mail-1.5.1/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/javax.mail-1.5.1/build-evosuite.xml
+++ b/scripts/program-config/javax.mail-1.5.1/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/javax.mail-1.5.1/build-randoop.xml b/scripts/program-config/javax.mail-1.5.1/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/javax.mail-1.5.1/build-randoop.xml
+++ b/scripts/program-config/javax.mail-1.5.1/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jaxen-1.1.6/build-evosuite.xml b/scripts/program-config/jaxen-1.1.6/build-evosuite.xml
index 5fd5f0dc..c745bb04 100644
--- a/scripts/program-config/jaxen-1.1.6/build-evosuite.xml
+++ b/scripts/program-config/jaxen-1.1.6/build-evosuite.xml
@@ -82,6 +82,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jaxen-1.1.6/build-randoop.xml b/scripts/program-config/jaxen-1.1.6/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/jaxen-1.1.6/build-randoop.xml
+++ b/scripts/program-config/jaxen-1.1.6/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jcommander-1.35/build-evosuite.xml b/scripts/program-config/jcommander-1.35/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/jcommander-1.35/build-evosuite.xml
+++ b/scripts/program-config/jcommander-1.35/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jcommander-1.35/build-randoop.xml b/scripts/program-config/jcommander-1.35/build-randoop.xml
index 905a4cb7..f955bea4 100644
--- a/scripts/program-config/jcommander-1.35/build-randoop.xml
+++ b/scripts/program-config/jcommander-1.35/build-randoop.xml
@@ -83,6 +83,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jdom-1.0/build-evosuite.xml b/scripts/program-config/jdom-1.0/build-evosuite.xml
index b741e23d..6b3ed45c 100644
--- a/scripts/program-config/jdom-1.0/build-evosuite.xml
+++ b/scripts/program-config/jdom-1.0/build-evosuite.xml
@@ -85,6 +85,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jdom-1.0/build-randoop.xml b/scripts/program-config/jdom-1.0/build-randoop.xml
index 2f85388c..577f8bb3 100644
--- a/scripts/program-config/jdom-1.0/build-randoop.xml
+++ b/scripts/program-config/jdom-1.0/build-randoop.xml
@@ -84,6 +84,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/joda-time-2.3/build-evosuite.xml b/scripts/program-config/joda-time-2.3/build-evosuite.xml
index f2a8d40b..2b401805 100644
--- a/scripts/program-config/joda-time-2.3/build-evosuite.xml
+++ b/scripts/program-config/joda-time-2.3/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/../exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/joda-time-2.3/build-randoop.xml b/scripts/program-config/joda-time-2.3/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/joda-time-2.3/build-randoop.xml
+++ b/scripts/program-config/joda-time-2.3/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jvc-1.1/build-evosuite.xml b/scripts/program-config/jvc-1.1/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/jvc-1.1/build-evosuite.xml
+++ b/scripts/program-config/jvc-1.1/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/jvc-1.1/build-randoop.xml b/scripts/program-config/jvc-1.1/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/jvc-1.1/build-randoop.xml
+++ b/scripts/program-config/jvc-1.1/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/nekomud-r16/build-evosuite.xml b/scripts/program-config/nekomud-r16/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/nekomud-r16/build-evosuite.xml
+++ b/scripts/program-config/nekomud-r16/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/nekomud-r16/build-randoop.xml b/scripts/program-config/nekomud-r16/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/nekomud-r16/build-randoop.xml
+++ b/scripts/program-config/nekomud-r16/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/pmd-core-5.2.2/build-evosuite.xml b/scripts/program-config/pmd-core-5.2.2/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/pmd-core-5.2.2/build-evosuite.xml
+++ b/scripts/program-config/pmd-core-5.2.2/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/pmd-core-5.2.2/build-randoop.xml b/scripts/program-config/pmd-core-5.2.2/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/pmd-core-5.2.2/build-randoop.xml
+++ b/scripts/program-config/pmd-core-5.2.2/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/sat4j-core-2.3.5/build-evosuite.xml b/scripts/program-config/sat4j-core-2.3.5/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/sat4j-core-2.3.5/build-evosuite.xml
+++ b/scripts/program-config/sat4j-core-2.3.5/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/sat4j-core-2.3.5/build-randoop.xml b/scripts/program-config/sat4j-core-2.3.5/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/sat4j-core-2.3.5/build-randoop.xml
+++ b/scripts/program-config/sat4j-core-2.3.5/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/shiro-core-1.2.3/build-evosuite.xml b/scripts/program-config/shiro-core-1.2.3/build-evosuite.xml
index cbfc801f..8b89608f 100644
--- a/scripts/program-config/shiro-core-1.2.3/build-evosuite.xml
+++ b/scripts/program-config/shiro-core-1.2.3/build-evosuite.xml
@@ -83,6 +83,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/shiro-core-1.2.3/build-randoop.xml b/scripts/program-config/shiro-core-1.2.3/build-randoop.xml
index 7640e67a..b5460cf4 100644
--- a/scripts/program-config/shiro-core-1.2.3/build-randoop.xml
+++ b/scripts/program-config/shiro-core-1.2.3/build-randoop.xml
@@ -82,6 +82,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/slf4j-api-1.7.12/build-evosuite.xml b/scripts/program-config/slf4j-api-1.7.12/build-evosuite.xml
index 7c5d09bb..cf297823 100644
--- a/scripts/program-config/slf4j-api-1.7.12/build-evosuite.xml
+++ b/scripts/program-config/slf4j-api-1.7.12/build-evosuite.xml
@@ -97,6 +97,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/slf4j-api-1.7.12/build-randoop.xml b/scripts/program-config/slf4j-api-1.7.12/build-randoop.xml
index 373fc978..7a533200 100644
--- a/scripts/program-config/slf4j-api-1.7.12/build-randoop.xml
+++ b/scripts/program-config/slf4j-api-1.7.12/build-randoop.xml
@@ -96,6 +96,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/tiny-sql-2.26/build-evosuite.xml b/scripts/program-config/tiny-sql-2.26/build-evosuite.xml
index 876166eb..ec7086bd 100644
--- a/scripts/program-config/tiny-sql-2.26/build-evosuite.xml
+++ b/scripts/program-config/tiny-sql-2.26/build-evosuite.xml
@@ -89,6 +89,7 @@
                testOrder="sort_methods"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/program-config/tiny-sql-2.26/build-randoop.xml b/scripts/program-config/tiny-sql-2.26/build-randoop.xml
index 72c46953..d0deb2f3 100644
--- a/scripts/program-config/tiny-sql-2.26/build-randoop.xml
+++ b/scripts/program-config/tiny-sql-2.26/build-randoop.xml
@@ -88,6 +88,7 @@
                excludeFailingTests="false"
                serializedMapsFile="${resultdir}/preprocessing.ser"
                mutantsLogFile="${resultdir}/mutants.log"
+               excludeMutantsFile="${resultdir}/exclude_mutants.txt"
                summaryFile="${resultdir}/summary.csv"
                mutantDetailsFile="${resultdir}/details.csv"
                covMapFile="${resultdir}/covMap.csv"
diff --git a/scripts/trim_mutants.py b/scripts/trim_mutants.py
new file mode 100755
index 00000000..8d2b8459
--- /dev/null
+++ b/scripts/trim_mutants.py
@@ -0,0 +1,188 @@
+#!/usr/bin/env python3
+"""Create an exclude list for redundant mutants from a mutants.log file.
+
+This script reduces the number of mutants by identifying mutants to exclude,
+keeping only a limited number per method while preserving diverse mutation operators.
+The output is a list of mutant IDs to exclude that can be used with Major's
+exclude option.
+"""
+
+import argparse
+import sys
+from collections import defaultdict
+from pathlib import Path
+
+
+def parse_mutant_line(line):
+    """Parse a mutant line and extract key information.
+
+    Returns:
+        dict: Dictionary with 'id', 'operator', 'method', and 'line' keys, or None if parsing fails.
+    """
+    parts = line.strip().split(":")
+    if len(parts) < 7:
+        return None
+
+    mutant_id = parts[0]
+    operator = parts[1]
+
+    # Find the method identifier (format: CLASS@METHOD or just CLASS)
+    # It's the 5th field (index 4)
+    method_identifier = parts[4]
+
+    return {
+        "id": mutant_id,
+        "operator": operator,
+        "method": method_identifier,
+        "line": line.strip(),
+    }
+
+
+def group_mutants_by_method(mutants_file):
+    """Group mutants by their method identifier.
+
+    Returns:
+        dict: Dictionary mapping method identifiers to lists of mutant dictionaries.
+    """
+    method_mutants = defaultdict(list)
+
+    with Path(mutants_file).open("r") as f:
+        for line in f:
+            mutant = parse_mutant_line(line)
+            if mutant:
+                method_mutants[mutant["method"]].append(mutant)
+
+    return method_mutants
+
+
+def select_diverse_mutants(mutants, max_per_method=3):
+    """Select a limited number of mutants per method, preferring diversity.
+
+    Strategy:
+    1. Group by mutation operator
+    2. Select one mutant from each operator type until we hit the limit
+    3. If we still have room, add more mutants round-robin style
+
+    Returns:
+        list: List of selected mutant dictionaries.
+    """
+    if len(mutants) <= max_per_method:
+        return mutants
+
+    # Group by operator
+    by_operator = defaultdict(list)
+    for mutant in mutants:
+        by_operator[mutant["operator"]].append(mutant)
+
+    selected = []
+    operators = list(by_operator.keys())
+
+    # First pass: select one from each operator type
+    for op in operators:
+        if len(selected) >= max_per_method:
+            break
+        selected.append(by_operator[op][0])
+
+    # If we still need more and have fewer operators than max_per_method,
+    # add more mutants round-robin
+    if len(selected) < max_per_method:
+        op_index = 0
+        while len(selected) < max_per_method:
+            op = operators[op_index % len(operators)]
+            # Find the next mutant from this operator that we haven't selected
+            for mutant in by_operator[op]:
+                if mutant not in selected:
+                    selected.append(mutant)
+                    break
+            op_index += 1
+            # Safety check to avoid infinite loop
+            if op_index > len(operators) * max_per_method:
+                break
+
+    return selected
+
+
+def trim_mutants(input_file, output_file, max_per_method=3, verbose=False):
+    """Create an exclude list for mutants to reduce redundancy.
+
+    Args:
+        input_file: Path to input mutants.log
+        output_file: Path to output exclude_mutants.txt
+        max_per_method: Maximum number of mutants to keep per method
+        verbose: Print statistics
+    """
+    # Group mutants by method
+    method_mutants = group_mutants_by_method(input_file)
+
+    if verbose:
+        total_original = sum(len(mutants) for mutants in method_mutants.values())
+        print(f"Original mutants: {total_original}")
+        print(f"Methods with mutants: {len(method_mutants)}")
+        print(f"Max mutants per method: {max_per_method}")
+
+    # Select mutants to keep
+    selected_mutants = []
+    all_mutants = []
+    for method, mutants in sorted(method_mutants.items()):
+        diverse_mutants = select_diverse_mutants(mutants, max_per_method)
+        selected_mutants.extend(diverse_mutants)
+        all_mutants.extend(mutants)
+
+        if verbose and len(mutants) > max_per_method:
+            print(f"  {method}: {len(mutants)} -> {len(diverse_mutants)}")
+
+    # Determine which mutants to exclude (all mutants NOT selected)
+    selected_ids = {int(m["id"]) for m in selected_mutants}
+    all_ids = {int(m["id"]) for m in all_mutants}
+    excluded_ids = sorted(all_ids - selected_ids)
+
+    # Write excluded mutant IDs to file
+    with Path(output_file).open("w") as f:
+        f.writelines(f"{mutant_id}\n" for mutant_id in excluded_ids)
+
+    if verbose:
+        print(f"\nMutants to keep: {len(selected_mutants)}")
+        print(f"Mutants to exclude: {len(excluded_ids)}")
+        reduction = (len(excluded_ids) / total_original) * 100
+        print(f"Reduction: {reduction:.1f}%")
+        print(f"Exclude list written to: {output_file}")
+
+
+def main():
+    """Trim mutants from a mutants.log file."""
+    parser = argparse.ArgumentParser(
+        description="Create an exclude list for redundant mutants from a mutants.log file"
+    )
+    parser.add_argument("input_file", help="Input mutants.log file")
+    parser.add_argument(
+        "-o",
+        "--output",
+        help="Output file (default: exclude_mutants.txt in same directory)",
+        default=None,
+    )
+    parser.add_argument(
+        "-m",
+        "--max-per-method",
+        type=int,
+        default=3,
+        help="Maximum number of mutants to keep per method (default: 3)",
+    )
+    parser.add_argument("-v", "--verbose", action="store_true", help="Print detailed statistics")
+
+    args = parser.parse_args()
+
+    input_path = Path(args.input_file)
+    if not input_path.exists():
+        print(f"Error: Input file not found: {args.input_file}", file=sys.stderr)
+        sys.exit(1)
+
+    if args.output:
+        output_path = Path(args.output)
+    else:
+        output_path = input_path.parent / "exclude_mutants.txt"
+
+    trim_mutants(input_path, output_path, args.max_per_method, args.verbose)
+
+
+if __name__ == "__main__":
+    main()