Auto-generate citations and references.

git-svn-id: https://svn.r-project.org/R/trunk@88550 00db46b3-68df-0310-9c12-caf00c1e9a41

Author: hornik

src/library/base/man/Bessel.Rd

@@ -46,7 +46,7 @@ besselY(x, nu)
   or \eqn{e^{x} K_{\nu}(x)}{exp(x) K(x;nu)} are returned.
 
   For \eqn{\nu < 0}{nu < 0}, formulae 9.1.2 and 9.6.2 from
-  \bibcite{Abramowitz & Stegun}
+  \bibcitet{R:Abramowitz+Stegun:1972}
   are applied (which is probably suboptimal), except for
   \code{besselK} which is symmetric in \code{nu}.
 
@@ -72,10 +72,8 @@ besselY(x, nu)
   }
 }
 \references{
-  Abramowitz, M. and Stegun, I. A. (1972).
-  \emph{Handbook of Mathematical Functions}.
-  Dover, New York;
-  Chapter 9: Bessel Functions of Integer Order.
+  \bibinfo{R:Abramowitz+Stegun:1972}{footer}{Chapter 9: Bessel Functions of Integer Order.}
+  \bibshow{*}
 
   In order of \dQuote{Source} citation above:
 

src/library/base/man/Hyperbolic.Rd

@@ -35,7 +35,7 @@ atanh(x)
 
    Branch cuts are consistent with the inverse trigonometric functions
    \code{asin} \emph{et seq}, and agree with those defined in
-   \bibcite{Abramowitz & Stegun, figure 4.7, page 86}.
+   \bibcitet{|R:Abramowitz+Stegun:1972|figure 4.7\\\\\\, page 86}.
    The behaviour actually on the cuts
    follows the C99 standard which requires continuity coming round the
    endpoint in a counter-clockwise direction.
@@ -54,9 +54,9 @@ atanh(x)
   version of \code{tanh()} for numeric \code{x}.
 }
 \references{
-  Abramowitz, M. and Stegun, I. A. (1972)
-  \emph{Handbook of Mathematical Functions.} New York: Dover.\cr
-  Chapter 4. Elementary Transcendental Functions: Logarithmic,
-  Exponential, Circular and Hyperbolic Functions
+  \bibinfo{R:Abramowitz+Stegun:1972}{footer}{Chapter 4. Elementary
+    Transcendental Functions: Logarithmic, Exponential, Circular and
+    Hyperbolic Functions}
+  \bibshow{*}
 }
 \keyword{math}

src/library/base/man/Special.Rd

@@ -52,23 +52,23 @@ lfactorial(x)
   \deqn{B(a,b) = \frac{\Gamma(a)\Gamma(b)}{\Gamma(a+b)}.}{B(a,b) = \Gamma(a)\Gamma(b)/\Gamma(a+b).}
   The formal definition is
   \deqn{B(a, b) = \int_0^1 t^{a-1} (1-t)^{b-1} dt}{integral_0^1 t^(a-1) (1-t)^(b-1) dt}
-  (\bibcite{Abramowitz and Stegun section 6.2.1, page 258}).
+  \bibcitep{|R:Abramowitz+Stegun:1972|section 6.2.1\\\\\\, page 258}.
   Note that it is only
   defined in \R for non-negative \code{a} and \code{b}, and is infinite
   if either is zero.
 
   The functions \code{gamma} and \code{lgamma} return the gamma function
   \eqn{\Gamma(x)} and the natural logarithm of \emph{the absolute value of} the
   gamma function.  The gamma function is defined by
-  (\bibcite{Abramowitz and Stegun section 6.1.1, page 255})
+  \bibcitep{|R:Abramowitz+Stegun:1972|section 6.1.1\\\\\\, page 255}
   \deqn{\Gamma(x) = \int_0^\infty t^{x-1} e^{-t} dt}{\Gamma(x) = integral_0^Inf t^(x-1) exp(-t) dt}
   for all \eqn{x > 0}, from which the recursions \eqn{\Gamma(x+1) =
   x\Gamma(x)} and then \eqn{\Gamma(x+n) = (x+n-1)(x+n-2)\cdots x \Gamma(x)}
   for all non-negative integers \eqn{n}.  Solving  for \eqn{\Gamma(x)} and
   analytic continuation leads to the expression for non-integer negative real numbers,
   \deqn{\Gamma(x) = \frac{\Gamma(x + n)}{(x + n -1) \cdots (x + 1)x}, \ n \in \mathbb{Z}^{+}, -n < x < 0,%
   }{\Gamma(x) = \Gamma(x + n)/((x + n -1) ... (x + 1)x), n in N, -n < x < 0,}
-  see \bibcite{Abramowitz and Stegun (6.1.16 or 6.1.22, page 256)}.
+  see \bibcitet{|R:Abramowitz+Stegun:1972|6.1.16 or 6.1.22\\\\\\, page 256}.
   %
   The gamma function is not defined for zero and negative integers (when
   \code{NaN} is returned).  There will be a warning on possible loss of
@@ -87,7 +87,7 @@ lfactorial(x)
     \frac{\Gamma'(x)}{\Gamma(x)}}{digamma(x) = \psi(x) = d/dx{ln \Gamma(x)} = \Gamma'(x) / \Gamma(x)}
   \eqn{\psi} and its derivatives, the \code{psigamma()} functions, are
   often called the \sQuote{\I{polygamma}} functions, e.g.\sspace{}in
-  \bibcite{Abramowitz and Stegun (section 6.4.1, page 260)}; and higher
+  \bibcitet{|R:Abramowitz+Stegun:1972|section 6.4.1\\\\\\, page 260}; and higher
   derivatives (\code{deriv = 2:4}) have occasionally been called
   \sQuote{\I{tetragamma}}, \sQuote{\I{pentagamma}}, and \sQuote{\I{hexagamma}}.
 
@@ -123,15 +123,12 @@ lfactorial(x)
   Abramowitz and Stegun is used.
 }
 \references{
-  Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988)
-  \emph{The New S Language}.
-  Wadsworth & Brooks/Cole. (For \code{gamma} and \code{lgamma}.)
-
-  Abramowitz, M. and Stegun, I. A. (1972)
-  \emph{Handbook of Mathematical Functions}. New York: Dover.
-  \url{https://en.wikipedia.org/wiki/Abramowitz_and_Stegun} provides
-  links to the full text which is in public domain.\cr
-  Chapter 6: Gamma and Related Functions.
+  \bibinfo{R:Abramowitz+Stegun:1972}{footer}{
+    \\\\\\url{https://en.wikipedia.org/wiki/Abramowitz_and_Stegun} provides
+    links to the full text which is in public domain.\\\\\\cr
+    Chapter 6: Gamma and Related Functions.}
+  \bibinfo{R:Becker+Chambers+Wilks:1988}{footer}{(For \\\\\\code{gamma} and \\\\\\code{lgamma}.)}
+  \bibshow{*, R:Becker+Chambers+Wilks:1988}
 }
 \seealso{
   \code{\link{Arithmetic}} for simple, \code{\link{sqrt}} for

src/library/base/man/Trig.Rd

@@ -72,7 +72,7 @@ tanpi(x)
 
 \section{Complex values}{
    For the inverse trigonometric functions, branch cuts are defined as in
-   \bibcite{Abramowitz and Stegun, figure 4.4, page 79}.
+   \bibcitet{|R:Abramowitz+Stegun:1972|figure 4.4\\\\\\, page 79}.
 
    For \code{asin} and \code{acos}, there are two cuts, both along
    the real axis: \eqn{\left(-\infty, -1\right]}{(-Inf, -1]} and
@@ -97,19 +97,14 @@ tanpi(x)
   \code{\link[=S4groupGeneric]{Math}} group generic.
 }
 \references{
-  Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988)
-  \emph{The New S Language}.
-  Wadsworth & Brooks/Cole.
-
-  Abramowitz, M. and Stegun, I. A. (1972). \emph{Handbook of
-    Mathematical Functions}. New York: Dover.\cr
-  Chapter 4. Elementary Transcendental Functions: Logarithmic,
-  Exponential, Circular and Hyperbolic Functions
+  \bibinfo{R:Abramowitz+Stegun:1972}{footer}{Chapter 4. Elementary
+    Transcendental Functions: Logarithmic, Exponential, Circular and
+    Hyperbolic Functions}
+  \bibshow{*, R:Becker+Chambers+Wilks:1988}
 
   For \code{cospi}, \code{sinpi}, and \code{tanpi} the C11 extension
   ISO/IEC TS 18661-4:2015 (draft at
   \url{https://www.open-std.org/jtc1/sc22/wg14/www/docs/n1950.pdf}).
-  
 }
 \examples{
 x <- seq(-3, 7, by = 1/8)

src/library/base/man/UseMethod.Rd

@@ -165,7 +165,7 @@ NextMethod(generic = NULL, object = NULL, \dots)
   method.  It is possible to change the method that \code{NextMethod}
   would dispatch by manipulating \code{.Class}, but \sQuote{this is not
     recommended unless you understand the inheritance mechanism
-    thoroughly} (\bibcite{Chambers & Hastie, 1992, p.\sspace{}469}).
+    thoroughly} \bibcitep{|R:Chambers:1992b|page 469}.
 }
 \note{
   This scheme is called \emph{S3} (S version 3).  For new projects,
@@ -179,9 +179,6 @@ NextMethod(generic = NULL, object = NULL, \dots)
   \code{\link{getS3method}}, \code{\link{is.object}}.
 }
 \references{
-  Chambers, J. M. (1992)
-  \emph{Classes and methods: object-oriented programming in S.}
-  Appendix A of \emph{Statistical Models in S}
-  eds J. M. Chambers and T. J. Hastie, Wadsworth & Brooks/Cole.
+  \bibshow{*}
 }
 \keyword{methods}

src/library/base/man/formatc.Rd

@@ -89,7 +89,7 @@ prettyNum(x, big.mark = "",   big.interval = 3L,
 
   \item{flag}{for \code{formatC}, a character string giving a
     format modifier as in
-    \bibcite{Kernighan and Ritchie (1988, page 243)} 
+    \bibcitet{|R:Kernighan+Ritchie:1988|page 243}
     or the C+99 standard.\describe{
       \item{\code{"0"}}{pads leading zeros;}
       \item{\code{"-"}}{does left adjustment,}
@@ -229,8 +229,7 @@ prettyNum(x, big.mark = "",   big.interval = 3L,
   %% Martin Maechler
 }
 \references{
-  Kernighan, B. W. and Ritchie, D. M. (1988)
-  \emph{The C Programming Language.}  Second edition.  Prentice Hall.
+  \bibshow{*}
 }
 \seealso{
   \code{\link{format}}.

src/library/base/man/sprintf.Rd

@@ -41,7 +41,7 @@ gettextf(fmt, \dots, domain = NULL, trim = TRUE)
   \dQuote{skip} an argument.)
 
   The following is abstracted from
-  \bibcite{Kernighan and Ritchie (1988)}:
+  \bibcitet{R:Kernighan+Ritchie:1988}:
   however the actual implementation will follow the C99
   standard and fine details (especially the behaviour under user error)
   may depend on the platform. References to numbered arguments come from
@@ -185,9 +185,9 @@ gettextf(fmt, \dots, domain = NULL, trim = TRUE)
 }
 
 \references{
-  Kernighan, B. W. and Ritchie, D. M. (1988)
-  \emph{The C Programming Language.} Second edition, Prentice Hall.
-  Describes the format options in table B-1 in the Appendix.
+  \bibinfo{R:Kernighan+Ritchie:1988}{footer}{Describes the format
+    options in table B-1 in the Appendix.}
+  \bibshow{*}
 
   The C Standards, especially ISO/IEC 9899:1999 for \sQuote{C99}.  Links
   can be found at