feat(rename): changed repo + envs from hdruk_test to stars-testing-intro (#22)

amyheather · amyheather · commit 967a32201bb4 · 2026-02-13T09:38:12.000Z
diff --git a/.github/workflows/docker_quarto.yaml b/.github/workflows/docker_quarto.yaml
@@ -57,14 +57,14 @@ jobs:
         with:
           context: .
           tags: |
-            ghcr.io/pythonhealthdatascience/hdruk_tests:latest
+            ghcr.io/pythonhealthdatascience/stars-testing-intro:latest
           push: true
   
   build-deploy:
     runs-on: ubuntu-latest
     needs: [publish-docker]
     container:
-      image: ghcr.io/pythonhealthdatascience/hdruk_tests:latest
+      image: ghcr.io/pythonhealthdatascience/stars-testing-intro:latest
       credentials:
         username: ${{ github.actor }}
         password: ${{ secrets.GITHUB_TOKEN }}
diff --git a/CITATION.cff b/CITATION.cff
@@ -18,8 +18,8 @@ authors:
     email: t.m.w.monks@exeter.ac.uk
     affiliation: University of Exeter
     orcid: 'https://orcid.org/0000-0003-2631-4481'
-repository-code: 'https://github.com/pythonhealthdatascience/hdruk_tests/'
-url: 'https://pythonhealthdatascience.github.io/hdruk_tests/'
+repository-code: 'https://github.com/pythonhealthdatascience/stars-testing-intro/'
+url: 'https://pythonhealthdatascience.github.io/stars-testing-intro/'
 abstract: >-
   Materials supporting our HDR UK Futures training videos on
   testing.
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -1,6 +1,6 @@
 # Contributing
 
-This file is for contributors. It describes how the `hdruk_tests` site is set-up and quality controlled.
+This file is for contributors. It describes how the `stars-testing-intro` site is set-up and quality controlled.
 
 ## Example code
 
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,4 +1,4 @@
-Title: hdruk_tests
+Title: stars-testing-intro
 Imports:
     covr
     devtools
diff --git a/Dockerfile b/Dockerfile
@@ -75,9 +75,9 @@ RUN rm -f /workspace/.Renviron
 RUN conda env create -f environment.yaml
 
 # Make the environment active by default
-ENV CONDA_DEFAULT_ENV=hdruk_tests
-ENV PATH="/opt/conda/envs/hdruk_tests/bin:${PATH}"
-RUN echo "conda activate hdruk_tests" >> /root/.bashrc
+ENV CONDA_DEFAULT_ENV=stars-testing-intro
+ENV PATH="/opt/conda/envs/stars-testing-intro/bin:${PATH}"
+RUN echo "conda activate stars-testing-intro" >> /root/.bashrc
 
 # R: set renv path and restore packages
 ENV RENV_PATHS_LIBRARY=/workspace/renv/library
@@ -87,7 +87,7 @@ RUN Rscript -e "install.packages('renv', repos = 'https://cloud.r-project.org')"
     Rscript -e "renv::restore()"
 
 # Set conda environment as default for reticulate
-ENV RETICULATE_PYTHON=/opt/conda/envs/hdruk_tests/bin/python
+ENV RETICULATE_PYTHON=/opt/conda/envs/stars-testing-intro/bin/python
 
 # Default command
 CMD ["/bin/bash"]
diff --git a/README.md b/README.md
@@ -2,9 +2,9 @@
 
 This repository contains code behind our website with materials for the 'Testing in Research Workflows' module on HDR UK's RSE001 <a href='https://hdruklearn.org/courses/course-v1:HDRUK+RSE001+2024' target ='_blank'>Research Software Engineering training course</a>. It was developed as part of the <a href='https://pythonhealthdatascience.github.io/stars/' target='_blank'>STARS project</a>.
     
-You can view the website here: <https://pythonhealthdatascience.github.io/hdruk_tests/>
+You can view the website here: <https://pythonhealthdatascience.github.io/stars-testing-intro/>
 
-[![](images/website_screenshot.png)](https://pythonhealthdatascience.github.io/hdruk_tests/)
+[![](images/website_screenshot.png)](https://pythonhealthdatascience.github.io/stars-testing-intro/)
 
 For an explanation of how this site is set up and quality-controlled, please see `CONTRIBUTING.md`.
 
diff --git a/_quarto.yml b/_quarto.yml
@@ -11,7 +11,7 @@ website:
   navbar:
     right:
       - icon: github
-        href: https://github.com/pythonhealthdatascience/hdruk_tests/
+        href: https://github.com/pythonhealthdatascience/stars-testing-intro/
   announcement:
     dismissable: false
     icon: info-circle
diff --git a/environment.yaml b/environment.yaml
@@ -1,4 +1,4 @@
-name: hdruk_tests
+name: stars-testing-intro
 channels:
   - conda-forge
 dependencies:
diff --git a/pages/back_tests.qmd b/pages/back_tests.qmd
@@ -5,7 +5,7 @@ title: "Back tests"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/case_study.qmd b/pages/case_study.qmd
@@ -5,7 +5,7 @@ title: "Case study"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/defensive_programming.qmd b/pages/defensive_programming.qmd
@@ -7,7 +7,7 @@ filters:
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/functional_tests.qmd b/pages/functional_tests.qmd
@@ -5,7 +5,7 @@ title: "Functional tests"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/github_actions.qmd b/pages/github_actions.qmd
@@ -5,7 +5,7 @@ title: "Running tests via GitHub actions"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
@@ -245,12 +245,12 @@ The video below demonstrates this workflow running in GitHub Actions. For the de
 
 ::: {.python-content}
 
-* Open the [GitHub repository](https://github.com/pythonhealthdatascience/hdruk_tests).
-* Go to the [Actions](https://github.com/pythonhealthdatascience/hdruk_tests/actions) tab.
-* Click on the [python_tests](https://github.com/pythonhealthdatascience/hdruk_tests/actions/workflows/python_tests.yaml) action.
-* View the [workflow YAML](https://github.com/pythonhealthdatascience/hdruk_tests/blob/main/.github/workflows/python_tests.yaml).
+* Open the [GitHub repository](https://github.com/pythonhealthdatascience/stars-testing-intro).
+* Go to the [Actions](https://github.com/pythonhealthdatascience/stars-testing-intro/actions) tab.
+* Click on the [python_tests](https://github.com/pythonhealthdatascience/stars-testing-intro/actions/workflows/python_tests.yaml) action.
+* View the [workflow YAML](https://github.com/pythonhealthdatascience/stars-testing-intro/blob/main/.github/workflows/python_tests.yaml).
 * Trigger the action via `workflow_dispatch`.
-* [View the running test](https://github.com/pythonhealthdatascience/hdruk_tests/actions/runs/21067946032) - see they are installing the requirements, running tests, and pass.
+* [View the running test](https://github.com/pythonhealthdatascience/stars-testing-intro/actions/runs/21067946032) - see they are installing the requirements, running tests, and pass.
 
 {{< video /videos/run_tests_python_githubactions.webm >}}
 
@@ -262,12 +262,12 @@ The tests all pass in the end-
 
 ::: {.r-content}
 
-* Open the [GitHub repository](https://github.com/pythonhealthdatascience/hdruk_tests).
-* Go to the [Actions](https://github.com/pythonhealthdatascience/hdruk_tests/actions) tab.
-* Click on the [r_tests](https://github.com/pythonhealthdatascience/hdruk_tests/actions/workflows/r_tests.yaml) action.
-* View the [workflow YAML](https://github.com/pythonhealthdatascience/hdruk_tests/blob/main/.github/workflows/r_tests.yaml).
+* Open the [GitHub repository](https://github.com/pythonhealthdatascience/stars-testing-intro).
+* Go to the [Actions](https://github.com/pythonhealthdatascience/stars-testing-intro/actions) tab.
+* Click on the [r_tests](https://github.com/pythonhealthdatascience/stars-testing-intro/actions/workflows/r_tests.yaml) action.
+* View the [workflow YAML](https://github.com/pythonhealthdatascience/stars-testing-intro/blob/main/.github/workflows/r_tests.yaml).
 * Trigger the action via `workflow_dispatch`, running it from the `dev` branch.
-* [View the running test](https://github.com/pythonhealthdatascience/hdruk_tests/actions/runs/21166564091) - see they are installing the packages, getting ready to run tests.
+* [View the running test](https://github.com/pythonhealthdatascience/stars-testing-intro/actions/runs/21166564091) - see they are installing the packages, getting ready to run tests.
 
 {{< video /videos/run_tests_r_githubactions.webm >}}
 
diff --git a/pages/parametrising_tests.qmd b/pages/parametrising_tests.qmd
@@ -5,7 +5,7 @@ title: "Parameterising tests"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/run_tests.qmd b/pages/run_tests.qmd
@@ -90,7 +90,7 @@ project/
 The video below demonstrates running tests on a package structured this way. In the video we:
 
 * Use `tree`  to display the file structure (matches that shown above).
-* Activate our environment: `conda activate hdruk_tests` (which includes pytest).
+* Activate our environment: `conda activate stars-testing-intro` (which includes pytest).
 * Install our local package (if not already installed): `pip install -e .`.
 * Verify the installation with `conda list`, confirming our `waitingtimes` package appears.
 * Show you the test file (`nano tests/test_intro_simple.py`) (matches the one from the previous page on writing basic tests).
@@ -145,7 +145,7 @@ testthat::test_dir("tests/testthat")
 
 In the video below, we have an example of a research project structured as an our R project.
 
-* We highlight that the renv is active (`Project '~/Documents/stars/hdruk_tests' loaded. [renv 1.1.5]`).
+* We highlight that the renv is active (`Project '~/Documents/stars/stars-testing-intro' loaded. [renv 1.1.5]`).
 * We show the test file we will be running (`test_intro_simple.R`).
 * We run `devtools::test()` and can see that all tests pass.
 
diff --git a/pages/test_coverage.qmd b/pages/test_coverage.qmd
@@ -5,7 +5,7 @@ title: "Test coverage"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/unit_tests.qmd b/pages/unit_tests.qmd
@@ -5,7 +5,7 @@ title: "Unit tests"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}
diff --git a/pages/write_basic_test.qmd b/pages/write_basic_test.qmd
@@ -5,7 +5,7 @@ title: "How to write a basic test"
 ```{r}
 #| include: false
 library(reticulate)
-use_condaenv("hdruk_tests", required = TRUE)
+use_condaenv("stars-testing-intro", required = TRUE)
 ```
 
 {{< include /assets/language-selector.html >}}

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-Title: hdruk_tests`
	`1`	`+Title: stars-testing-intro`
`2`	`2`	`Imports:`
`3`	`3`	`covr`
`4`	`4`	`devtools`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-name: hdruk_tests`
	`1`	`+name: stars-testing-intro`
`2`	`2`	`channels:`
`3`	`3`	`- conda-forge`
`4`	`4`	`dependencies:`