From 1c9c87b94adeb54116df5e330e647dae14325fb5 Mon Sep 17 00:00:00 2001 From: Scala Steward Date: Sun, 21 Apr 2024 19:20:25 +0000 Subject: [PATCH 1/3] Update scalafmt-core to 3.8.1 --- .scalafmt.conf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.scalafmt.conf b/.scalafmt.conf index ace08b0c3..8f715773e 100644 --- a/.scalafmt.conf +++ b/.scalafmt.conf @@ -13,5 +13,5 @@ optIn.breakChainOnFirstMethodDot = false align.openParenDefnSite = false project.git = true assumeStandardLibraryStripMargin = true -version = 3.6.1 +version = 3.8.1 runner.dialect = scala213 From f9a89839fb046a8955dd5592e9650e0061907d9a Mon Sep 17 00:00:00 2001 From: Scala Steward Date: Sun, 21 Apr 2024 19:20:45 +0000 Subject: [PATCH 2/3] Reformat with scalafmt 3.8.1 Executed command: scalafmt --non-interactive --- .../statistics/UserStatistic.scala | 1 + .../tools/parameters/ParamAccess.scala | 14 ++++++-------- 2 files changed, 7 insertions(+), 8 deletions(-) diff --git a/modules/statistics/src/main/scala/de/proteinevolution/statistics/UserStatistic.scala b/modules/statistics/src/main/scala/de/proteinevolution/statistics/UserStatistic.scala index e69de29bb..8b1378917 100644 --- a/modules/statistics/src/main/scala/de/proteinevolution/statistics/UserStatistic.scala +++ b/modules/statistics/src/main/scala/de/proteinevolution/statistics/UserStatistic.scala @@ -0,0 +1 @@ + diff --git a/modules/tools/src/main/scala/de/proteinevolution/tools/parameters/ParamAccess.scala b/modules/tools/src/main/scala/de/proteinevolution/tools/parameters/ParamAccess.scala index 5d7215acb..120d14bd4 100644 --- a/modules/tools/src/main/scala/de/proteinevolution/tools/parameters/ParamAccess.scala +++ b/modules/tools/src/main/scala/de/proteinevolution/tools/parameters/ParamAccess.scala @@ -93,14 +93,12 @@ class ParamAccess @Inject() (tel: TEL) { case "COSINE_PERCENTILE_CUTOFF" => select("cosine_percentile_cutoff", default = Some("70")) case "ALIGNMENT_CUTOFF" => select("alignment_cutoff", default = Some("0.30")) case "WIN_LEN" => select("win_len", default = Some("15")) - case "MERGE_HITS" => select("merge_hits", default = Some("1")) - case "PLM_ALN_MODE" => select("plm_aln_mode", default = Some("loc")) - case "SPAN" => select("span", default = Some("25")) - case "SIGMA_FACTOR" => select("sigma_factor", default = Some("2")) - case "BFACTOR" => select("bfactor", default = Some("2")) - case "PLM_GAP_EXT" => select("plm_gap_ext", default = Some("0.5")) - - + case "MERGE_HITS" => select("merge_hits", default = Some("1")) + case "PLM_ALN_MODE" => select("plm_aln_mode", default = Some("loc")) + case "SPAN" => select("span", default = Some("25")) + case "SIGMA_FACTOR" => select("sigma_factor", default = Some("2")) + case "BFACTOR" => select("bfactor", default = Some("2")) + case "PLM_GAP_EXT" => select("plm_gap_ext", default = Some("0.5")) // HHpred case "TWOTEXTALIGNMENT" => From 21cc14624b8eee990cf344ad8f5b2274cfc9db47 Mon Sep 17 00:00:00 2001 From: Scala Steward Date: Sun, 21 Apr 2024 19:20:45 +0000 Subject: [PATCH 3/3] Add 'Reformat with scalafmt 3.8.1' to .git-blame-ignore-revs --- .git-blame-ignore-revs | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.git-blame-ignore-revs b/.git-blame-ignore-revs index 4be937d47..4aa5944c8 100644 --- a/.git-blame-ignore-revs +++ b/.git-blame-ignore-revs @@ -3,3 +3,6 @@ # Scala Steward: Reformat with scalafmt 3.6.0 df858b0ea7cc4743ec9c78cee1486ad91de1dbd4 + +# Scala Steward: Reformat with scalafmt 3.8.1 +f9a89839fb046a8955dd5592e9650e0061907d9a