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<!DOCTYPE html>
<html>
<head>
<meta charset='utf-8' />
<meta http-equiv="X-UA-Compatible" content="chrome=1" />
<meta name="description" content="Preprocessed Connectomes Project" />
<link rel="stylesheet" href="stylesheets/bib-publication-list.css"/>
<link rel="stylesheet" type="text/css" media="screen" href="stylesheets/stylesheet.css">
<script src="https://code.jquery.com/jquery-latest.min.js" type="text/javascript"></script>
<script src="javascripts/menu_script.js"></script>
<title>Preprocessed Connectomes Project</title>
</head>
<body>
<div id="container">
<!-- HEADER -->
<header>
<!--<a id="forkme_banner" href="https://github.com/ccraddock/abide_preproc">View on GitHub</a>-->
<h1 id="project_title">Preprocessed Connectomes Project</h1><br>
<div id='cssmenu'>
<ul>
<li><a href='index.html'>Overview</a></li>
<li><a href='datasets.html'>Datasets</a></li>
<li class='active'><a href='http://preprocessed-connectomes-project.github.io/quality-assessment-protocol/' target="_blank">Quality Assessment</a></li>
<li class='active'><a href='publications.html'>Publications</a></li>
<li class='active'><a href='https://groups.google.com/d/forum/pcp_forum' target="_blank">Forum</a></li>
<li class='active'><a href='https://github.com/preprocessed-connectomes-project' target="_blank">View on Github</a></li>
</ul>
</div>
</header>
<div id="main_content_wrap" class="outer">
<section id="main_content" class="inner">
<center>
<img src="images/raw_mont.jpg" border="0" alt="" class="imgframe" />
</center>
<p>The goal of the Preprocessed Connectomes Project is to systematically preprocess the data from the
<a href="http://fcon_1000.projects.nitrc.org/" target="_blank">1000 Functional Connectomes Project
(FCP)</a> and <a href="http://fcon_1000.projects.nitrc.org/" target="_blank">International Neuroimaging
Data-sharing Initiative (INDI)</a> and openly share the results. Initiated in 2011 with the ADHD-200
Preprocessed initative, the PCP has grown to include the Beijing Enhanced DTI dataset and ABIDE. To
enable the comparison of different preprocessing choices and to accomodate different opinions about
the best preprocessings strategies, most of the data is preprocessed using a variety of tools and
parameters.</p>
<p>Data is currently hosted in an <a href="http://aws.amazon.com/s3/" target="_blank">Amazon Web Services
Public S3 Bucket</a> and at <a href="http://nitrc.org" target="_blank">NITRC</a>. More information about
downloading the data and about the various preprocessing pipelines and strategies employed can be found on
the <a href="datasets.html">Datasets</a> page. If you use PCP data in your research, please cite it in your
publications along with the specific pipeline that you used. Also, please let us know about your publication
so that we can add it to our list of <a href="publications.html">Publications</a>.</p>
<p>Assessing the quality of data and determining the data that should be excluded from an analysis due to poor
quality is difficult. To help address this issue, we have developed a
<a href="http://preprocessed-connectomes-project.github.io/quality-assessment-protocol/">Quality Assessment Protocol</a>
and have calculated these metrics on the
<a href="http://preprocessed-connectomes-project.github.io/abide/quality_assessment.html">ABIDE</a> dataset.</p>
<p>Please direct any comments or questions to the <a href="https://groups.google.com/d/forum/pcp_forum" target="_blank">PCP Forum</a></li>.
Also, please monitor the forum for updates and bug reports.</p>
<p><br /></p>
<h4>
<a name="authors-and-contributors" class="anchor" href="#authors-and-contributors"><span class="octicon octicon-link"></span></a>Credits</h4>
<hr />
<p>
<strong>Preprocessed Connectomes Project Founders</strong><br />
<a href="mailto:cameron.craddock@childmind.org">R. Cameron Craddock</a><sup>1,2</sup>,
<a href="mailto:pierre.bellec@criugm.qc.ca">Pierre Bellec</a><sup>3,4</sup><br /><br />
<strong>Project Coordinator</strong><br />
R. Cameron Craddock<sup>1,2</sup><br /><br />
<strong>Contributors</strong><br />
<i><u>ABIDE Preprocessed:</u></i> Pierre Bellec</a><sup>3,4</sup>, Yassine Benhajali<sup>3,6</sup>,
Francois Chouinard<sup>3,8</sup>, Daniel Clark<sup>1</sup>, R. Cameron Craddock</a><sup>1,2</sup>,
Alan Evans<sup>8</sup>,
Steven Giavasis<sup>1,2</sup>, Budhachandra Khundrakpam<sup>8</sup>,
John Lewis<sup>8</sup>,
Qingyang Li<sup>1</sup>, Zarrar Shezhad<sup>2,5</sup>, Aimi Watanabe<sup>1</sup>, Ting Xu<sup>7</sup>,
Chao-Gan Yan<sup>2</sup>,
Zhen Yang<sup>1,2</sup>, Xinian Zuo<sup>7</sup>, the <a href="http://fcon_1000.projects.nitrc.org/indi/abide/" target="_blank">ABIDE consortium</a>.<br />
<i><u>ADHD-200 Preprocessed:</u></i> Pierre Bellec</a><sup>3,4</sup>, Carlton Chu, R. Cameron Craddock</a><sup>1,2</sup>,
the <a href="http://fcon_1000.projects.nitrc.org/indi/adhd200/index.html" target="_blank">ADHD-200 consortium</a>.<br />
<i><u>Beijing Enhanced DTI Preprocessed:</u></i> András Jakab<sup>10,11</sup>, Yufeng Zang<sup>12</sup>, the <a href="http://fcon_1000.projects.nitrc.org/" target="_blank">International Neuroimaging Data-sharing Initiative (INDI)</a>.<br /><br />
<strong>Data Hosting</strong><br />
Data sharing is made possible with the generous support of <a href="http://www.nitrc.org/">NITRC</a> and <a href="http://aws.amazon.com/">Amazon Web Services</a>.
</p>
<hr />
<p><small>
<sup>1</sup><a href="http://www.childmind.org/en/center-for-developing-brain/">Center for the Developing Brain</a>, Child Mind Institute</a>, New York, New York, United States of America,
<sup>2</sup><a href="http://www.rfmh.org/nki/">Nathan S. Kline Institute for Psychiatric Research</a>, Orangeburg, New York, United States of America,
<sup>3</sup><a href="http://www.criugm.qc.ca/">Centre de recherche de l'institut de gériatrie de Montréal</a>, Montréal, Québec, Canada,
<sup>4</sup><a href="http://diro.umontreal.ca/accueil/">Départmenet d'informatique et de recherche
opérationnelle</a>, Université de Montréal, Montréal, Québec, Canada,
<sup>5</sup><a href="http://psychology.yale.edu/">Department of Pyschology</a>, Yale University, New Haven, CT, United States of America,
<sup>6</sup><a href="http://anthropo.umontreal.ca/accueil/"> Département d'anthropologie</a>,Université de Montréal, Montréal, Québec, Canada,
<sup>7</sup><a href="http://lfcd.psych.ac.cn/">Laboratory for Functional Connectome and Development</a>, China Key Laboratory of Behavioral Science, Magnetic Resonance Imaging Research Center, Institute of Psychology, Chinese Academy of Sciences, Beijing, China,
<sup>8</sup><a href="http://www.bic.mni.mcgill.ca/">The McConnell Brain Imaging Centre</a>, Montreal Neurological Insitute, McGill University, Montréal, Québec, Canada,
<sup>9</sup><a href="http://www.aboutourkids.org/research/institutes_programs/phyllis_green_randolph_cowen_institute_pediatric_neuroscience">Phyllis Green and Randolph Co̅wen Institute for Pediatric Neuroscience</a> at the NYU Child Study Center, New York University Langone Medical Center, New York, New York, United States of America,
<sup>10</sup><a href="http://www.unideb.hu/portal/en">University of Debrecen</a>, Hungary,
<sup>11</sup><a href="http://http://www.vision.ee.ethz.ch/">Computer Vision Laboratory</a>, ETH, Zürich, Switzerland,
<sup>12</sup>Beijing Normal University, State Key Laboratory of Cognitive Neuroscience and Learning
</small></p>
</section>
</div>
<!-- FOOTER -->
<footer class="inner">
<p>The Preprocessed Connectomes Project is supported by the <a href="http://www.rfmh.org">Nathan S. Kline
Institute for Psychiatric Research</a>, the <a href="https://www.omh.ny.gov/">New York State Office of Mental Health</a>, the <a href="http://corporate.rfmh.org">Research Foundation
for Mental Hygiene</a>, and the <a href="http://www.chilmdmind.org">Child Mind Institute</a>. Data sharing is made possible with the generous support
of <a href="http://www.nitrc.org">NITRC</a> and <a href="http://aws.amazon.com">Amazon Web Services</a>.</p>
<p>Published with <a href="http://pages.github.com">GitHub Pages</a></p>
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