Skip to content

Commit e8f3c86

Browse files
eprifticlaude
andcommitted
Add analysis screenshots, update suite descriptions
- Add screenshots: jury voting, population heatmap, best model, comparative - Screenshot tabs now: Data, Parameters, Results, AUC Evolution, Jury, Population - Replace predomicspkg with gpredomicsR (R bindings for Rust engine) - Remove dataset-specific hero stats, use general ones (1000x, <1% features, 3 langs, open source) - Update R quickstart to gpredomicsR Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
1 parent 65c6136 commit e8f3c86

5 files changed

Lines changed: 33 additions & 25 deletions

File tree

assets/screenshots/best_model.png

283 KB
Loading

assets/screenshots/comparative.png

250 KB
Loading

assets/screenshots/jury.png

430 KB
Loading

assets/screenshots/population.png

586 KB
Loading

index.html

Lines changed: 33 additions & 25 deletions
Original file line numberDiff line numberDiff line change
@@ -316,20 +316,20 @@ <h1>Predictive Models<br />from Omics Data</h1>
316316
</div>
317317
<div class="hero-stats">
318318
<div class="stat">
319-
<div class="stat-value">3</div>
320-
<div class="stat-label">Implementations</div>
319+
<div class="stat-value">1000x</div>
320+
<div class="stat-label">Faster (Rust engine)</div>
321321
</div>
322322
<div class="stat">
323-
<div class="stat-value">1000x</div>
324-
<div class="stat-label">Faster (Rust)</div>
323+
<div class="stat-value">&lt;1%</div>
324+
<div class="stat-label">Feature selection</div>
325325
</div>
326326
<div class="stat">
327-
<div class="stat-value">AUC 1.0</div>
328-
<div class="stat-label">On Benchmark</div>
327+
<div class="stat-value">3</div>
328+
<div class="stat-label">Languages (R, Python, Web)</div>
329329
</div>
330330
<div class="stat">
331-
<div class="stat-value">k=32</div>
332-
<div class="stat-label">Features from 1980</div>
331+
<div class="stat-value">Open</div>
332+
<div class="stat-label">Source &amp; Free</div>
333333
</div>
334334
</div>
335335
</div>
@@ -389,23 +389,31 @@ <h2 class="section-title">Web Application</h2>
389389
launch analyses, and explore results interactively.
390390
</p>
391391
<div class="screenshot-tabs">
392-
<button class="screenshot-tab active" onclick="showScreenshot('results')">Results & Jobs</button>
393-
<button class="screenshot-tab" onclick="showScreenshot('charts')">Charts & Metrics</button>
394-
<button class="screenshot-tab" onclick="showScreenshot('data')">Data Explorer</button>
392+
<button class="screenshot-tab active" onclick="showScreenshot('data')">Data Explorer</button>
395393
<button class="screenshot-tab" onclick="showScreenshot('params')">Parameters</button>
394+
<button class="screenshot-tab" onclick="showScreenshot('results')">Results & Jobs</button>
395+
<button class="screenshot-tab" onclick="showScreenshot('charts')">AUC Evolution</button>
396+
<button class="screenshot-tab" onclick="showScreenshot('jury')">Jury Voting</button>
397+
<button class="screenshot-tab" onclick="showScreenshot('population')">Population</button>
396398
</div>
397399
<div class="screenshot-frame">
398-
<div id="ss-results" class="screenshot-item active">
399-
<img src="/assets/screenshots/results.png" alt="Results overview with job table and summary metrics" />
400+
<div id="ss-data" class="screenshot-item active">
401+
<img src="/assets/screenshots/data.png" alt="Data explorer with prevalence plots, feature filtering and barcode visualization" />
402+
</div>
403+
<div id="ss-params" class="screenshot-item">
404+
<img src="/assets/screenshots/parameters.png" alt="Parameter configuration for genetic algorithm, voting ensemble, and feature importance" />
405+
</div>
406+
<div id="ss-results" class="screenshot-item">
407+
<img src="/assets/screenshots/results.png" alt="Job table with AUC scores, model complexity, and summary metrics" />
400408
</div>
401409
<div id="ss-charts" class="screenshot-item">
402-
<img src="/assets/screenshots/results_full.png" alt="AUC evolution charts and model complexity" />
410+
<img src="/assets/screenshots/results_full.png" alt="AUC evolution over generations, model complexity tracking, fit vs AUC" />
403411
</div>
404-
<div id="ss-data" class="screenshot-item">
405-
<img src="/assets/screenshots/data.png" alt="Data explorer with prevalence plots and feature filtering" />
412+
<div id="ss-jury" class="screenshot-item">
413+
<img src="/assets/screenshots/jury.png" alt="Jury voting with confusion matrices, vote matrix heatmap, sample predictions and FBM population" />
406414
</div>
407-
<div id="ss-params" class="screenshot-item">
408-
<img src="/assets/screenshots/parameters.png" alt="Parameter configuration for genetic algorithm" />
415+
<div id="ss-population" class="screenshot-item">
416+
<img src="/assets/screenshots/population.png" alt="Population of models with feature heatmap and violin plots" />
409417
</div>
410418
</div>
411419
</div>
@@ -434,8 +442,8 @@ <h3>PredomicsApp</h3>
434442
</div>
435443
<div class="suite-card r">
436444
<span class="suite-badge badge-r">R Package</span>
437-
<h3>predomicspkg</h3>
438-
<p>The original R implementation with the complete algorithm library, visualization tools, and data analysis utilities for the R ecosystem.</p>
445+
<h3>gpredomicsR</h3>
446+
<p>R bindings for the gpredomics Rust engine. Successor to the original predomicspkg, bringing the 1,000x Rust speedup to the R ecosystem with a familiar interface.</p>
439447
<a href="https://github.com/predomics/predomicspkg" class="suite-link">View Repository &rarr;</a>
440448
</div>
441449
</div>
@@ -471,12 +479,12 @@ <h3>&#x1F40D; Python</h3>
471479
</div>
472480
</div>
473481
<div class="code-card">
474-
<h3>&#x1F4CA; R</h3>
482+
<h3>&#x1F4CA; R (gpredomicsR)</h3>
475483
<div class="code-block">
476-
<span class="comment"># Install from GitHub</span><br/>
477-
devtools::<span class="cmd">install_github</span>(<span class="str">"predomics/predomicspkg"</span>)<br/><br/>
478-
<span class="kw">library</span>(predomics)<br/>
479-
result &lt;- <span class="cmd">mainFunction</span>(data)<br/>
484+
<span class="comment"># Coming soon &mdash; R bindings for gpredomics</span><br/>
485+
devtools::<span class="cmd">install_github</span>(<span class="str">"predomics/gpredomicsR"</span>)<br/><br/>
486+
<span class="kw">library</span>(gpredomicsR)<br/>
487+
result &lt;- <span class="cmd">gpredomics.fit</span>(params)<br/>
480488
</div>
481489
</div>
482490
</div>

0 commit comments

Comments
 (0)