gpredomicsR/NAMESPACE at main · predomics/gpredomicsR · GitHub

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# Generated by roxygen2: do not edit by hand

S3method("$",Data)
S3method("$",Experiment)
S3method("$",GLogger)
S3method("$",Individual)
S3method("$",Jury)
S3method("$",Param)
S3method("$",Population)
S3method("$",RunningFlag)
S3method("[[",Data)
S3method("[[",Experiment)
S3method("[[",GLogger)
S3method("[[",Individual)
S3method("[[",Jury)
S3method("[[",Param)
S3method("[[",Population)
S3method("[[",RunningFlag)
S3method(print,Data)
S3method(print,Experiment)
S3method(print,Individual)
S3method(print,Jury)
S3method(print,Param)
S3method(print,Population)
export(Data)
export(Experiment)
export(GLogger)
export(Individual)
export(Jury)
export(Param)
export(Population)
export(RunningFlag)
export(analyzeAttributeEvolution)
export(analyzePopulationFeatures)
export(as.gpredomics.data)
export(as_gpredomics_data)
export(check.X_y)
export(computeCardEnrichment)
export(confInterBinomial)
export(filterfeaturesK)
export(fit)
export(fit_on)
export(getFeaturePrevalence)
export(getModelInfo_gpredomics)
export(getTheBestIndividual)
export(get_fields)
export(get_taxonomy)
export(gpredomicsSummary)
export(gpredomics_grid)
export(gpredomics_info)
export(gpredomics_params_info)
export(gpredomics_predict)
export(gpredomics_prob)
export(gpredomics_sort)
export(gpredomics_train)
export(isExperiment)
export(isModel)
export(isModelCollection)
export(isPopulation)
export(listOfModelsToDenseCoefMatrix)
export(listOfModelsToListOfDenseVec)
export(load_experiment)
export(makeFeatureModelPrevalenceNetworkMiic)
export(modelToDenseVec)
export(parseExperiment)
export(plotAbundanceByClass)
export(plotBarcode)
export(plotClassHeatmap)
export(plotFeatureModelCoeffs)
export(plotHistory)
export(plotImportanceHeatmap)
export(plotIndividualWaterfall)
export(plotPrevalence)
export(plot_genealogy)
export(plot_population_heatmap)
export(populationGet_X)
export(populationToDataFrame)
export(printExperiment)
export(printModel)
export(printModelCollection)
export(printPopulation)
export(printy)
export(register_gpredomics_caret)
export(runExperiment)
export(selectBestPopulation)
export(sortPopulation)
export(train_gpredomics_caret)
import(ggplot2)
import(tidyr)
importFrom(dplyr,across)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(pROC,auc)
importFrom(pROC,roc)
importFrom(reshape2,melt)
importFrom(scales,label_number)
importFrom(scales,log_trans)
importFrom(scales,squish)
importFrom(tidyr,pivot_longer)
useDynLib(gpredomicsR, .registration = TRUE)