diff --git a/two-scale-heat-conduction/micro-dumux/run.sh b/two-scale-heat-conduction/micro-dumux/run.sh
index 7ce4c9a0b..5e6764b70 100755
--- a/two-scale-heat-conduction/micro-dumux/run.sh
+++ b/two-scale-heat-conduction/micro-dumux/run.sh
@@ -9,16 +9,16 @@ usage() { echo "Usage: cmd [-s] [-p n]" 1>&2; exit 1; }
 # Check if no input argument was provided
 if [ -z "$*" ] ; then
   echo "No input argument provided. Micro Manager is launched in serial"
-  python3 run_micro_manager.py params.input
+  micro_manager micro-manager-config.json
 fi
 
 while getopts ":sp" opt; do
   case ${opt} in
   s)
-    python3 run_micro_manager.py params.input
+    micro_manager micro-manager-config.json
     ;;
   p)
-    mpiexec -n "$2" python3 run_micro_manager.py params.input
+    mpiexec -n "$2" micro_manager micro-manager-config.json
     ;;
   *)
     usage
diff --git a/two-scale-heat-conduction/micro-dumux/run_micro_manager.py b/two-scale-heat-conduction/micro-dumux/run_micro_manager.py
deleted file mode 100644
index c1def36e8..000000000
--- a/two-scale-heat-conduction/micro-dumux/run_micro_manager.py
+++ /dev/null
@@ -1,9 +0,0 @@
-"""
-Script to run the Micro Manager
-"""
-
-from micro_manager import MicroManager
-
-manager = MicroManager("micro-manager-config.json")
-
-manager.solve()
diff --git a/two-scale-heat-conduction/micro-nutils/run.sh b/two-scale-heat-conduction/micro-nutils/run.sh
index f51583362..1fb3eccf7 100755
--- a/two-scale-heat-conduction/micro-nutils/run.sh
+++ b/two-scale-heat-conduction/micro-nutils/run.sh
@@ -13,16 +13,16 @@ pip install -r requirements.txt
 # Check if no input argument was provided
 if [ -z "$*" ] ; then
   echo "No input argument provided. Micro Manager is launched in serial"
-  python3 run_micro_manager.py
+  micro_manager micro-manager-config.json
 fi
 
 while getopts ":sp" opt; do
   case ${opt} in
   s)
-    python3 run_micro_manager.py
+    micro_manager micro-manager-config.json
     ;;
   p)
-    mpiexec -n "$2" python3 run_micro_manager.py
+    mpiexec -n "$2" micro_manager micro-manager-config.json
     ;;
   *)
     usage
diff --git a/two-scale-heat-conduction/micro-nutils/run_micro_manager.py b/two-scale-heat-conduction/micro-nutils/run_micro_manager.py
deleted file mode 100644
index c1def36e8..000000000
--- a/two-scale-heat-conduction/micro-nutils/run_micro_manager.py
+++ /dev/null
@@ -1,9 +0,0 @@
-"""
-Script to run the Micro Manager
-"""
-
-from micro_manager import MicroManager
-
-manager = MicroManager("micro-manager-config.json")
-
-manager.solve()