As discussed in the stdpopsim call on 6/28/2022, it would be great to develop some sort of CI testing for the analysis2 workflow.
- one idea would be to set up a GH Action that triggers rerunning the pipeline on a very tiny example, and then evaluates if the proper files were created. this would probably be a simple route and easy to code.
- A second idea would be to try to integrate real
pytest integration via snakemake, but no one on the call was familiar with how exactly to do that.
thoughts?
As discussed in the stdpopsim call on 6/28/2022, it would be great to develop some sort of CI testing for the analysis2 workflow.
pytestintegration viasnakemake, but no one on the call was familiar with how exactly to do that.thoughts?