demultiplexing - not all indexes unique

[givdieri]

Index fasta file for demultiplexing produces an error when using mixed end of line styles: \r \n
Issue resolved by using windows-style at every line end.

[anslan]

Windows-style line ends are "\r\n" and this should be fine in the demultiplexing step when cheking the provided index file. Nowadays, Unix and Mac should have the same 'line end style': only \n - which is also fine.
The issue may arise when using Mac OS 9 or earlier for generating the index file.
PipeCraft2 is supported on macOS 10.15+