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<h1 class="page-header">Publications
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<li>Fauskee, Kuo, <b>Heath</b>, Xie, Pryer. 2025. <a href="https://doi.org/10.1111/nph.70244">Comparative phylogenetic analyses of RNA editing in fern plastomes suggest possible adaptive innovations</a>. <i>New Phytologist</i>, doi: 10.1111/nph.70244.</li><br>
<li><b>do Rosario Petrucci</b>, May, <b>Heath</b>. 2025. <a href="https://doi.org/10.1098/rstb.2023.0313">Fossils improve extinction-rate estimates under state-dependent diversification models</a>. <i>Philosophical Transactions of the Royal Society B</i>, 380:20230313.</li><br>
<li>Mulvey, Nicolic, Allen, <b>Heath</b>, Warnock. 2025. <a href="https://doi.org/10.1017/pab.2024.47">From fossils to phylogenies: exploring the integration of paleontological data into Bayesian phylogenetic inference</a>. <i>Paleobiology</i>, 51:214-236.</li><br>
<li><b>Justison</b>, <b>Heath</b>. 2024. <a href="https://doi.org/10.18061/bssb.v2i3.9285">Exploring the distribution of phylogenetic networks generated under a birth-death-hybridization process</a>. <i>Bulletin of the Society of Systematic Biologists</i>, doi: 10.18061/bssb.v2i3.9285.</li><br>
<li><b>Justison</b>, Solis-Lemus, <b>Heath</b>. 2023. <a href="https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.14116">SiPhyNetwork: An R package for simulating phylogenetic networks</a>. <i>Methods in Ecology and Evolution</i>, 14:1687-1698.</li><br>
<li><b>Barido-Sottani</b>, <b>Żyła</b>, <b>Heath</b>. 2023. <a href="https://doi.org/10.1093/sysbio/syac073">Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process</a>. <i>Systematic Biology</i>, 72:466–475.</li><br>
<li>Ksepka, Field, <b>Heath</b>, <b>Pett</b>, Thomas, Giovanardi, Tennyson. 2023. <a href="https://doi.org/10.1017/jpa.2022.88">Largest-known fossil penguin provides insight into the early evolution of sphenisciform body size and flipper anatomy</a>. <i>Journal of Paleontology</i>, 97:434-453. [See feature in <i>The New York Times</i>: <a href="https://www.nytimes.com/2023/02/08/science/giant-penguin-fossil.html">The Biggest Penguin That Ever Existed Was a ‘Monster Bird’</a>]</li><br>
<li><b>Satler</b>, Herre, <b>Heath</b>, Machado, Gómez Zúñiga, Jandér, Eaton, Nason. 2023. <a href="https://doi.org/10.1002/ece3.9673">Pollinator and host sharing lead to hybridization and introgression in Panamanian free-standing figs, but not in their pollinator wasps</a>. <i>Ecology & Evolution</i>, 13:e9673.</li><br>
<li><b>Dismukes</b>, Braga, Hembry, <b>Heath</b>, Landis. 2022. <a href="http://www.annualreviews.org/eprint/X7RXSJIBD5WENU8J45HA/full/10.1146/annurev-ecolsys-102320-112823">Cophylogenetic methods to untangle the evolutionary history of ecological interactions</a>. <i>Annual Reviews in Ecology, Evolution, and Systematics</i>, 53:275-298.</li><br>
<li>Cole, Zhou, Fang, Pan, Ksepka, Fiddaman, Emerling, Thomas, Bi, Fang, Ellegaard, Feng, Smith, <b>Heath</b>, Tennyson, García Borboroglu, Wood, Hadden, Grosser, Bost, Cherel, Mattern, Hart, Sinding, Shepherd, Phillips, Quillfeldt, Masello, Bouzat, Ryan, Thompson, Ellenberg, Dann, Miller, Boersma, Zhao, Gilbert, Yang, Zhang, Zhang. 2022. <a href="https://www.nature.com/articles/s41467-022-31508-9">Genomic insights into the secondary aquatic transition of penguins</a>. <i>Nature Communications</i> 13:3912.</li><br>
<li><b>Barido-Sottani</b>, <b>Justison</b>, Borges, Brown, <b>Dismukes</b>, <b>do Rosario Petrucci</b>, Guimarães Fabreti, Höhna, Landis, Lewis, May, Mendes, <b>Pett</b>, Redelings, Tribble, Wright, Zenil-Ferguson, <b>Heath</b>. 2022. <a href="http://phyloworks.org/assets/JBS_etal_BSSB2022.pdf">Lessons learned from organizing and teaching virtual phylogenetics workshops</a>. <i>Bulletin of the Society of Systematic Biologists</i> 1(2):8425.</li><br>
<li><b>Satler</b>, Herre, <b>Heath</b>, Machado, Gómez Zúñiga, Nason. 2022. <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.16373">Genome-wide sequence data show no evidence of hybridization and introgression among pollinator wasps associated with a community of Panamanian strangler figs</a>. <i>Molecular Ecology</i> 31:2106-2123.</li><br>
<li><b>Dismukes</b>, <b>Heath</b>. 2021. <a href="https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13625">treeducken: an R package for simulating cophylogenetic systems</a>. <i>Methods in Ecology and Evolution</i>, 12:1358-1364.</li><br>
<li><b>Żyła</b>, Bogri, <b>Heath</b>, Solodovnikov. 2021. <a href="https://www.sciencedirect.com/science/article/abs/pii/S1055790320303316">Total-evidence analysis resolves the phylogenetic position of an enigmatic group of Paederinae rove beetles (Coleoptera: Staphylinidae)</a>. <i>Molecular Phylogenetics and Evolution</i>, 157:107059.</li><br>
<li>Thomas, Tennyson, Scofield, <b>Heath</b>, <b>Pett</b>, Ksepka. 2020. <a href="https://doi.org/10.1098/rspb.2020.1497">Ancient crested penguin constrains timing of recruitment into seabird hotspot</a>. <i>Proceedings of the Royal Society B</i>, 287:20201497.</li><br>
<li><b>Pett</b>, <b>Heath</b>. 2020. <a href="https://hal.inria.fr/PGE/hal-02536361">Inferring the timescale of phylogenetic trees from fossil data</a>. Eds: C. Scornavacca, F. Delsuc, N. Galtier. <a href="https://hal.inria.fr/PGE/"><i>Phylogenetics in the Genomic Era</i></a>. No commercial publisher | Authors open access book, pp: 5.1:1-5.1:18.</li><br>
<li><b>Barido-Sottani</b>, <b>Justison</b>, <b>Wright</b>, Warnock, <b>Pett</b>, <b>Heath</b>. 2020. <a href="https://hal.inria.fr/PGE/hal-02536394">Estimating a time-calibrated phylogeny of fossil and extant taxa using RevBayes</a>. Eds: C. Scornavacca, F. Delsuc, N. Galtier. <a href="https://hal.inria.fr/PGE/"><i>Phylogenetics in the Genomic Era</i></a>. No commercial publisher | Authors open access book, pp: 5.2:1-5.2:23.</li><br>
<li>Warnock, <b>Heath</b>, Stadler. 2020. <a href="https://www.cambridge.org/core/journals/paleobiology/article/assessing-the-impact-of-incomplete-species-sampling-on-estimates-of-speciation-and-extinction-rates/8D82C01066E7E2A24F2A4A8ACAC2B69F">Assessing the impact of incomplete species sampling on estimates of speciation and extinction rates.</a> <i>Paleobiology</i>, 46:137-157.</li><br>
<li><b>Satler</b>, Herre, Eaton, Machado, <b>Heath</b>, Nason. 2019. <a href="https://onlinelibrary.wiley.com/doi/full/10.1111/evo.13809">Inferring processes of coevolutionary diversification in a community of Panamanian strangler figs and associated pollinating wasps.</a> <i>Evolution</i>, 73:2295-2311.</li><br>
<li>Stadler, Gavryushkina, Warnock, Drummond, <b>Heath</b>. 2018. <a href="https://www.sciencedirect.com/science/article/pii/S002251931830119X">The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes</a>. <i>Journal of Theoretical Biology</i>, 447:41-55.</li><br>
<li>Barido-Sottani, Bošková, du Plessis, Kühnert, Magnus, Mitov, Müller, Pečerska, Rasmussen, Zhang, Drummond, <b>Heath</b>, Pybus, Vaughan, Stadler. 2018. <a href="https://academic.oup.com/sysbio/article/doi/10.1093/sysbio/syx060/3897660/Taming-the-BEAST-A-community-teaching-material">Taming the BEAST – A community teaching material resource for BEAST 2</a>. <i>Systematic Biology</i>, 67(1):170–174. </li><br>
<li>Höhna, Landis, <b>Heath</b>. 2017. <a href="http://onlinelibrary.wiley.com/doi/10.1002/cpbi.22/abstract">Phylogenetic Inference Using RevBayes</a>. <i>Current Protocols in Bioinformatics</i>, 57:6.16.1-6.16.34. </li><br>
<li>Gavryushkina, <b>Heath</b>, Ksepka, Stadler, Welch, Drummond. 2017. <a href="http://sysbio.oxfordjournals.org/content/early/2016/07/27/sysbio.syw060.full">Bayesian total evidence dating reveals the recent crown radiation of penguins</a>. <i>Systematic Biology</i>, 66(1):57-73. [<a href="assets/Gavryushkina_etal_SystBiol_2017.pdf">pdf</a>]</li><br>
<li>Höhna, Landis, <b>Heath</b>, Boussau, Lartillot, Moore, Huelsenbeck, Ronquist. 2016. <a href="http://sysbio.oxfordjournals.org/content/65/4/726">RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language</a>. <i>Systematic Biology</i>, 65:726-736.</li><br>
<li>Zhang, Stadler, Klopfstein, <b>Heath</b>, Ronquist. 2016. <a href="https://sysbio.oxfordjournals.org/content/65/2/228.full">Total-evidence dating under the fossilized birth-death process</a>. <i>Systematic Biology</i>, 65:228-249.</li><br>
<li>Cook, Edwards, Lacey, Guralnick, Soltis, Soltis, Welch, Bell, Galbreath, Himes, Allen, <b>Heath</b>, Carnaval, Cooper, Liu, Hanken, Ickert-Bond. 2014. <a href="http://bioscience.oxfordjournals.org/content/64/8/725.abstract">Natural history collections as emerging resources for innovative education</a>. <i>BioScience</i>. 64: 725-734. [<a href="http://aimup.unm.edu/documents/cooketal2014bioscience.pdf">pdf</a>]</li><br>
<li><b>Heath</b>, Huelsenbeck, Stadler. 2014. <a href="http://www.pnas.org/content/111/29/E2957.abstract">The fossilized birth-death process for coherent calibration of divergence-time estimates</a>. <i>Proceedings of the National Academy of Sciences</i> 111(29):E2957–E2966. [<a href="http://arxiv.org/abs/1310.2968">arXiv:1310.2968</a>]</li><br>
<li>Höhna, <b>Heath</b>, Boussau, Landis, Ronquist, Huelsenbeck. 2014. <a href="http://sysbio.oxfordjournals.org/content/63/5/753">Probabilistic graphical model representation in phylogenetics.</a> <i>Systematic Biology</i> 63:753–771. [<a href="http://arxiv.org/abs/1312.2386">arXiv:1312.2386</a>]</li><br>
<li><b>Heath</b>, Moore. 2014. Bayesian inference of species divergence times. In: <a href="http://www.crcpress.com/product/isbn/9781466500792"><i>Bayesian Phylogenetics: Methods, Algorithms, and Applications</i></a>. Chen, M.-H., L. Kuo, and P.O. Lewis (editors). Chapman & Hall/CRC. (invited book chapter) [email authors for PDF]</li><br>
<li>Stoltzfus, Lapp, Matasci, Deus, Sidlauskas, Zmasek, Vaidya, Pontelli, Cranston, Vos, Webb, Harmon, Pirrung, O'Meara, Pennell, Mirarab, Rosenberg, Balhoff, Bik, <b>Heath</b>, Midford, Brown, McTavish, Sukumaran, Westneat, Alfaro, Steele, and Jordan. 2013. <a href="http://www.biomedcentral.com/1471-2105/14/158/abstract">Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.</a> <i>BMC Bioinformatics</i> 14:158.</li><br>
<li>Darriba, Aberer, Flouri, <b>Heath</b>, Izquierdo-Carrasco, Stamatakis. 2013. <a href="http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6650929">Boosting the performance of Bayesian divergence time estimation with the Phylogenetic Likelihood Library</a>. <i>Parallel and Distributed Processing Symposium Workshops PhD Forum (IPDPSW)</i>, 2013 IEEE 27th International, Boston, USA, pp. 539-548. (peer-reviewed conference paper) [<a href="http://sco.h-its.org/exelixis/pubs/Exelixis-RRDR-2013-2.pdf">pdf</a>]</li><br>
<li><b>Heath</b>. 2012. <a href="http://sysbio.oxfordjournals.org/content/61/5/793">A hierarchical Bayesian model for calibrating estimates of species divergence times.</a> <i>Systematic Biology</i> 61:793-809. [<a href="http://phylo.bio.ku.edu/sites/default/files/Heath_SystBiol_2012.pdf">pdf</a>]</li><br>
<li><b>Heath</b>, Holder, Huelsenbeck. 2012. <a href="http://mbe.oxfordjournals.org/content/29/3/939">A Dirichlet process prior for estimating lineage-specific substitution rates.</a> <i>Molecular Biology and Evolution</i> 29:939-955. [<a href="http://phylo.bio.ku.edu/sites/default/files/Heath_etal_MBE_2012.pdf">pdf</a>]</li><br>
<li><b>Heath</b>, Hedtke, Hillis. 2008. <a href="http://www.jse.ac.cn/EN/10.3724/SP.J.1002.2008.08016">Taxon sampling and the accuracy of phylogenetic analyses.</a> <i>Journal of Systematics and Evolution</i> 46:239-257. [<a href="http://www.bio.utexas.edu/faculty/antisense/papers/Heathetal2008JSE.pdf">pdf</a>]</li><br>
<li><b>Heath</b>, Zwickl, Kim, Hillis. 2008. <a href="http://sysbio.oxfordjournals.org/content/57/1/160.full">Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.</a> <i>Systematic Biology</i> 57:160-166. </li><br>
<li>Hillis, <b>Heath</b>, St. John. 2005. <a href="http://sysbio.oxfordjournals.org/content/54/3/471.full">Analysis and visualization of tree space.</a> <i>Systematic Biology</i> 54:471-482. [<a href="http://phylo.bio.ku.edu/sites/default/files/Hillis_etal_SystBiol_2005.pdf">pdf</a>]</li><br>
<li>Wilcox, Zwickl, <b>Heath</b>, Hillis. 2002. <a href="http://www.sciencedirect.com/science/article/pii/S1055790302002440">Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support.</a> <i>Molecular Phylogenetics and Evolution</i> 25:361-371. [<a href="http://www.zo.utexas.edu/faculty/antisense/papers/Wilcox%20et%20al.pdf">pdf</a>]</li><br>
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