I set an output path for pygetpapers to a sub-folder inside my venv instead of the venv itself (.../venv/getpapers_outputs/phytomed200). For docanalysis to work, I had to move phytomed200 to the venv (...venv/phytomed200)
Suggest adding a method (and/or help menu instructions) to set a default path for pygetpapers and docanalysis