reporting on behalf of @vdancik
From INCATools/semantic-sql#59
http://data.pantherdb.org/ftp/pathway/current_release/BioPAX.tar.gz contains invalid RDF/XML, Rust RDF parsers will throw an error
It looks like the OWL is not valid RDF/XML. Rust uses a stricter parser than the OWLAPI or Jena, so these kinds of problems slip by...
The problem is here:
<bp:UnificationXref rdf:ID="eco_ECO:0000501_12">
<bp:id rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">ECO:0000501</bp:id>
<bp:db rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">eco</bp:db>
</bp:UnificationXref>
this is invalid RDF and eco_ECO is not defined
reporting on behalf of @vdancik
From INCATools/semantic-sql#59
http://data.pantherdb.org/ftp/pathway/current_release/BioPAX.tar.gz contains invalid RDF/XML, Rust RDF parsers will throw an error
It looks like the OWL is not valid RDF/XML. Rust uses a stricter parser than the OWLAPI or Jena, so these kinds of problems slip by...
The problem is here:
this is invalid RDF and eco_ECO is not defined