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Account for categorical var names when making unique (#115) #424

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Account for categorical var names when making unique (#115)

Account for categorical var names when making unique (#115) #424

Triggered via push December 11, 2025 14:06
@LouisK92LouisK92
pushed a4e177a
main
Status Failure
Total duration 10m 34s
Artifacts –

test.yaml

on: push
build  /  List components to test
45s
build / List components to test
Matrix: build / Test
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31 errors
build / Test (no_correction, methods_expression_correction, src/methods_expression_correction/no_correcti...
Process completed with exit code 1.
build / Test (andrews_human_liver_sc, datasets/loaders, src/datasets/loaders/andrews_human_liver_sc/confi...
Process completed with exit code 22.
build / Test (permute_celltype_annotations, control_methods, src/control_methods/permute_celltype_annotat...
Process completed with exit code 127.
build / Test (bruker_cosmx, datasets/loaders, src/datasets/loaders/bruker_cosmx/config.vsh.yaml, src/data...
Process completed with exit code 22.
build / Test (watershed, methods_segmentation, src/methods_segmentation/watershed/config.vsh.yaml, src/me...
Process completed with exit code 1.
build / Test (pciseq, methods_transcript_assignment, src/methods_transcript_assignment/pciseq/config.vsh....
Process completed with exit code 1.
build / Test (cellpose, methods_segmentation, src/methods_segmentation/cellpose/config.vsh.yaml, src/meth...
Process completed with exit code 1.
build / Test (bruker_cosmx_nsclc, datasets/loaders, src/datasets/loaders/bruker_cosmx_nsclc/config.vsh.ya...
Process completed with exit code 22.
build / Test (moscot, methods_cell_type_annotation, src/methods_cell_type_annotation/moscot/config.vsh.ya...
Process completed with exit code 22.
build / Test (aggregate_spatial_data, methods_data_aggregation, src/methods_data_aggregation/aggregate_sp...
Process completed with exit code 22.
build / Test (lee_human_colon_cancer_sc, datasets/loaders, src/datasets/loaders/lee_human_colon_cancer_sc...
Process completed with exit code 1.
build / Test (zuani_human_nsclc_sc, datasets/loaders, src/datasets/loaders/zuani_human_nsclc_sc/config.vs...
Process completed with exit code 22.
build / Test (fetch_task_execution, core, src/core/fetch_task_execution/config.vsh.yaml, src/core/fetch_t...
Process completed with exit code 1.
build / Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...
Process completed with exit code 1.
build / Test (gene_efficiency_correction, methods_expression_correction, src/methods_expression_correctio...
Process completed with exit code 127.
build / Test (wu_human_breast_cancer_sc, datasets/loaders, src/datasets/loaders/wu_human_breast_cancer_sc...
Process completed with exit code 1.
build / Test (basic_transcript_assignment, methods_transcript_assignment, src/methods_transcript_assignme...
Process completed with exit code 1.
build / Test (basic_count_aggregation, methods_count_aggregation, src/methods_count_aggregation/basic_cou...
Process completed with exit code 1.
build / Test (custom_segmentation, methods_segmentation, src/methods_segmentation/custom_segmentation/con...
Process completed with exit code 1.
build / Test (comseg, methods_transcript_assignment, src/methods_transcript_assignment/comseg/config.vsh....
Process completed with exit code 22.
build / Test (crop_region, datasets/processors, src/datasets/processors/crop_region/config.vsh.yaml, src/...
Process completed with exit code 22.
build / Test (binning, methods_segmentation, src/methods_segmentation/binning/config.vsh.yaml, src/method...
Process completed with exit code 1.
build / Test (tacco, methods_cell_type_annotation, src/methods_cell_type_annotation/tacco/config.vsh.yaml...
Process completed with exit code 1.
build / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
Process completed with exit code 1.
build / Test (normalize_by_volume, methods_normalization, src/methods_normalization/normalize_by_volume/c...
Process completed with exit code 22.
build / Test (lu_human_liver_cancer_sc, datasets/loaders, src/datasets/loaders/lu_human_liver_cancer_sc/c...
Process completed with exit code 22.
build / Test (stardist, methods_segmentation, src/methods_segmentation/stardist/config.vsh.yaml, src/meth...
Process completed with exit code 1.
build / Test (quality, metrics, src/metrics/quality/config.vsh.yaml, src/metrics/quality/, python_script,...
Process completed with exit code 1.
build / Test (resolvi_correction, methods_expression_correction, src/methods_expression_correction/resolv...
Process completed with exit code 1.
build / Test (basic_qc_filter, methods_qc_filter, src/methods_qc_filter/basic_qc_filter/config.vsh.yaml, ...
Process completed with exit code 1.
build / Test (normalize_by_counts, methods_normalization, src/methods_normalization/normalize_by_counts/c...
Process completed with exit code 1.