Improve logging when we fail to process a file because

See: https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#0102---2020-11-09

Fix Github links generated by the sphinx extension for settings

See: https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#0101---2020-11-09

Fix table of contents generated by sphinx extensions

See https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#0100---2020-10-12

Removed unused 'documented_elsewhere' annotation

See https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#090---2020-09-25

Settings annotations and Sphinx extension

See https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#080---2020-09-10

Simplify feature toggle annotations

See https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#070---2020-09-07

Multi-line annotation improvement

See https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#060---2020-08-27

Support for warnings in the `featuretoggles` Sphinx extension

https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#051---2020-08-25

Add config_and_tools and featuretoggles Sphinx extension

See https://github.com/edx/code-annotations/blob/master/CHANGELOG.rst#050---2020-08-06

Add support for multi-line code annotations

Added support for multi-line code annotations.