diff --git a/bulk_ntr_workflow/source_data/uterus.csv b/bulk_ntr_workflow/source_data/uterus.csv new file mode 100644 index 000000000..107903644 --- /dev/null +++ b/bulk_ntr_workflow/source_data/uterus.csv @@ -0,0 +1,36 @@ +tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references +ureter,https://purl.org/ccf/ASCTB-TEMP_ureter-vasculature,ureter vasculature,,,UBERON:0036376,wall of left ureter, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-anterior-body-of-uterus,central anterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-anterior-fundus-of-uterus,central anterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-anterior-lower-uterine-segment,central anterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-posterior-body-of-uterus,central posterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-posterior-fundus-of-uterus,central posterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-posterior-lower-uterine-segment,central posterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_cervical-mucosa,cervical mucosa,,,UBERON:0000002,uterine cervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_cervical-os,cervical os,,,UBERON:0000002,uterine cervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_cervical-squamo-columnar-junction,cervical squamo-columnar junction,,,UBERON:0000002,uterine cervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_columnar-cell-of-endocervix,columnar cell of endocervix,,,UBERON:0000458,endocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_connective-tissue-of-the-uterine-serosa,connective tissue of the uterine serosa,,,UBERON:0001297,serosa of the uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_ectocervical-epithelium,ectocervical epithelium,,,UBERON:0012249,ectocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_ectocervical-stroma,ectocervical stroma,,,UBERON:0012249,ectocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_endocervical-stroma,endocervical stroma,,,UBERON:0000458,endocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_external-cervical-os,external cervical os,,,UBERON:0012249,ectocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_inferior-uterine-vein,inferior uterine vein,,,UBERON:0000995,uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_inner-uterine-myometrium,inner uterine myometrium,,,UBERON:0001296,uterine myometrium,"https://doi.org/10.1093/molehr/gat083, https://doi.org/10.1186/1471-2393-13-S1-S7" +uterus,https://purl.org/ccf/ASCTB-TEMP_internal-cervical-os,internal cervical os,,,UBERON:0000458,endocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-anterior-body-of-uterus,left anterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-anterior-fundus-of-uterus,left anterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-anterior-lower-uterine-segment,left anterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-posterior-body-of-uterus,left posterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-posterior-fundus-of-uterus,left posterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-posterior-lower-uterine-segment,left posterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_lower-uterine-segment,lower uterine segment,,,UBERON:0000995,uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-the-uterine-serosa,mesothelium of the uterine serosa,,,UBERON:0001297,serosa of the uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_outer-uterine-myometrium,outer uterine myometrium,,,UBERON:0001296,uterine myometrium,https://doi.org/10.1101/2021.01.02.425073 +uterus,https://purl.org/ccf/ASCTB-TEMP_right-anterior-body-of-uterus,right anterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-anterior-fundus-of-uterus,right anterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-anterior-lower-uterine-segment,right anterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-posterior-body-of-uterus,right posterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-posterior-fundus-of-uterus,right posterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-posterior-lower-uterine-segment,right posterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_superior-uterine-vein,superior uterine vein,,,UBERON:0000995,uterus, \ No newline at end of file diff --git a/bulk_ntr_workflow/source_data/uterus_only.csv b/bulk_ntr_workflow/source_data/uterus_only.csv new file mode 100644 index 000000000..a05e5c327 --- /dev/null +++ b/bulk_ntr_workflow/source_data/uterus_only.csv @@ -0,0 +1,35 @@ +tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references +uterus,https://purl.org/ccf/ASCTB-TEMP_central-anterior-body-of-uterus,central anterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-anterior-fundus-of-uterus,central anterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-anterior-lower-uterine-segment,central anterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-posterior-body-of-uterus,central posterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-posterior-fundus-of-uterus,central posterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_central-posterior-lower-uterine-segment,central posterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_cervical-mucosa,cervical mucosa,,,UBERON:0000002,uterine cervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_cervical-os,cervical os,,,UBERON:0000002,uterine cervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_cervical-squamo-columnar-junction,cervical squamo-columnar junction,,,UBERON:0000002,uterine cervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_columnar-cell-of-endocervix,columnar cell of endocervix,,,UBERON:0000458,endocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_connective-tissue-of-the-uterine-serosa,connective tissue of the uterine serosa,,,UBERON:0001297,serosa of the uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_ectocervical-epithelium,ectocervical epithelium,,,UBERON:0012249,ectocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_ectocervical-stroma,ectocervical stroma,,,UBERON:0012249,ectocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_endocervical-stroma,endocervical stroma,,,UBERON:0000458,endocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_external-cervical-os,external cervical os,,,UBERON:0012249,ectocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_inferior-uterine-vein,inferior uterine vein,,,UBERON:0000995,uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_inner-uterine-myometrium,inner uterine myometrium,,,UBERON:0001296,uterine myometrium,"https://doi.org/10.1093/molehr/gat083, https://doi.org/10.1186/1471-2393-13-S1-S7" +uterus,https://purl.org/ccf/ASCTB-TEMP_internal-cervical-os,internal cervical os,,,UBERON:0000458,endocervix, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-anterior-body-of-uterus,left anterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-anterior-fundus-of-uterus,left anterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-anterior-lower-uterine-segment,left anterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-posterior-body-of-uterus,left posterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-posterior-fundus-of-uterus,left posterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_left-posterior-lower-uterine-segment,left posterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_lower-uterine-segment,lower uterine segment,,,UBERON:0000995,uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-the-uterine-serosa,mesothelium of the uterine serosa,,,UBERON:0001297,serosa of the uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_outer-uterine-myometrium,outer uterine myometrium,,,UBERON:0001296,uterine myometrium,https://doi.org/10.1101/2021.01.02.425073 +uterus,https://purl.org/ccf/ASCTB-TEMP_right-anterior-body-of-uterus,right anterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-anterior-fundus-of-uterus,right anterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-anterior-lower-uterine-segment,right anterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-posterior-body-of-uterus,right posterior body of uterus,,,UBERON:0009853,body of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-posterior-fundus-of-uterus,right posterior fundus of uterus,,,FMA:17561,Fundus of uterus, +uterus,https://purl.org/ccf/ASCTB-TEMP_right-posterior-lower-uterine-segment,right posterior lower uterine segment,,,,lower uterine segment, +uterus,https://purl.org/ccf/ASCTB-TEMP_superior-uterine-vein,superior uterine vein,,,UBERON:0000995,uterus, diff --git a/src/templates/hra-uterus-groups.template.tsv b/src/templates/hra-uterus-groups.template.tsv new file mode 100644 index 000000000..dff359c07 --- /dev/null +++ b/src/templates/hra-uterus-groups.template.tsv @@ -0,0 +1,2 @@ +ID LABEL Definition def_xref genus location In_subset Date Contributor Present_in_taxon Wikipedia_image xref +ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| EC % EC BFO:0000050 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=| diff --git a/src/templates/hra-uterus-reports/candidates.tsv b/src/templates/hra-uterus-reports/candidates.tsv new file mode 100644 index 000000000..a6974b708 --- /dev/null +++ b/src/templates/hra-uterus-reports/candidates.tsv @@ -0,0 +1,7 @@ +label as_iri uberon_id note +cervical mucosa UBERON:0012248 confirmed_match (confidence: high) +cervical os UBERON:0013758 confirmed_match (confidence: high) +cervical squamo-columnar junction UBERON:0012253 confirmed_match (confidence: high) +internal cervical os UBERON:0013759 confirmed_match (confidence: high) +ectocervical epithelium UBERON:0012251 confirmed_match (confidence: high) +external cervical os UBERON:0013760 confirmed_match (confidence: high) diff --git a/src/templates/hra-uterus-reports/errors.tsv b/src/templates/hra-uterus-reports/errors.tsv new file mode 100644 index 000000000..f1cdb7c0d --- /dev/null +++ b/src/templates/hra-uterus-reports/errors.tsv @@ -0,0 +1,13 @@ +label as_iri issue_type parent_id parent_label detail +central anterior fundus of uterus https://purl.org/ccf/ASCTB-TEMP_central-anterior-fundus-of-uterus unknown_parent FMA:17561 Fundus of uterus Unrecognised parent ID format +central anterior lower uterine segment https://purl.org/ccf/ASCTB-TEMP_central-anterior-lower-uterine-segment unknown_parent lower uterine segment Unrecognised parent ID format +central posterior fundus of uterus https://purl.org/ccf/ASCTB-TEMP_central-posterior-fundus-of-uterus unknown_parent FMA:17561 Fundus of uterus Unrecognised parent ID format +central posterior lower uterine segment https://purl.org/ccf/ASCTB-TEMP_central-posterior-lower-uterine-segment unknown_parent lower uterine segment Unrecognised parent ID format +left anterior fundus of uterus https://purl.org/ccf/ASCTB-TEMP_left-anterior-fundus-of-uterus unknown_parent FMA:17561 Fundus of uterus Unrecognised parent ID format +left anterior lower uterine segment https://purl.org/ccf/ASCTB-TEMP_left-anterior-lower-uterine-segment unknown_parent lower uterine segment Unrecognised parent ID format +left posterior fundus of uterus https://purl.org/ccf/ASCTB-TEMP_left-posterior-fundus-of-uterus unknown_parent FMA:17561 Fundus of uterus Unrecognised parent ID format +left posterior lower uterine segment https://purl.org/ccf/ASCTB-TEMP_left-posterior-lower-uterine-segment unknown_parent lower uterine segment Unrecognised parent ID format +right anterior fundus of uterus https://purl.org/ccf/ASCTB-TEMP_right-anterior-fundus-of-uterus unknown_parent FMA:17561 Fundus of uterus Unrecognised parent ID format +right anterior lower uterine segment https://purl.org/ccf/ASCTB-TEMP_right-anterior-lower-uterine-segment unknown_parent lower uterine segment Unrecognised parent ID format +right posterior fundus of uterus https://purl.org/ccf/ASCTB-TEMP_right-posterior-fundus-of-uterus unknown_parent FMA:17561 Fundus of uterus Unrecognised parent ID format +right posterior lower uterine segment https://purl.org/ccf/ASCTB-TEMP_right-posterior-lower-uterine-segment unknown_parent lower uterine segment Unrecognised parent ID format diff --git a/src/templates/hra-uterus-reports/input.tsv b/src/templates/hra-uterus-reports/input.tsv new file mode 100644 index 000000000..71e95faed --- /dev/null +++ b/src/templates/hra-uterus-reports/input.tsv @@ -0,0 +1,35 @@ +table as_iri label uberon_id parent_id parent_label references term_type +uterus https://purl.org/ccf/ASCTB-TEMP_central-anterior-body-of-uterus central anterior body of uterus UBERON:0009853 body of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_central-anterior-fundus-of-uterus central anterior fundus of uterus FMA:17561 Fundus of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_central-anterior-lower-uterine-segment central anterior lower uterine segment lower uterine segment leaf +uterus https://purl.org/ccf/ASCTB-TEMP_central-posterior-body-of-uterus central posterior body of uterus UBERON:0009853 body of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_central-posterior-fundus-of-uterus central posterior fundus of uterus FMA:17561 Fundus of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_central-posterior-lower-uterine-segment central posterior lower uterine segment lower uterine segment leaf +uterus https://purl.org/ccf/ASCTB-TEMP_cervical-mucosa cervical mucosa UBERON:0000002 uterine cervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_cervical-os cervical os UBERON:0000002 uterine cervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_cervical-squamo-columnar-junction cervical squamo-columnar junction UBERON:0000002 uterine cervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_columnar-cell-of-endocervix columnar cell of endocervix UBERON:0000458 endocervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_connective-tissue-of-the-uterine-serosa connective tissue of the uterine serosa UBERON:0001297 serosa of the uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_ectocervical-epithelium ectocervical epithelium UBERON:0012249 ectocervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_ectocervical-stroma ectocervical stroma UBERON:0012249 ectocervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_endocervical-stroma endocervical stroma UBERON:0000458 endocervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_external-cervical-os external cervical os UBERON:0012249 ectocervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_inferior-uterine-vein inferior uterine vein UBERON:0000995 uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_inner-uterine-myometrium inner uterine myometrium UBERON:0001296 uterine myometrium https://doi.org/10.1093/molehr/gat083, https://doi.org/10.1186/1471-2393-13-S1-S7 leaf +uterus https://purl.org/ccf/ASCTB-TEMP_internal-cervical-os internal cervical os UBERON:0000458 endocervix leaf +uterus https://purl.org/ccf/ASCTB-TEMP_left-anterior-body-of-uterus left anterior body of uterus UBERON:0009853 body of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_left-anterior-fundus-of-uterus left anterior fundus of uterus FMA:17561 Fundus of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_left-anterior-lower-uterine-segment left anterior lower uterine segment lower uterine segment leaf +uterus https://purl.org/ccf/ASCTB-TEMP_left-posterior-body-of-uterus left posterior body of uterus UBERON:0009853 body of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_left-posterior-fundus-of-uterus left posterior fundus of uterus FMA:17561 Fundus of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_left-posterior-lower-uterine-segment left posterior lower uterine segment lower uterine segment leaf +uterus https://purl.org/ccf/ASCTB-TEMP_lower-uterine-segment lower uterine segment UBERON:0000995 uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-the-uterine-serosa mesothelium of the uterine serosa UBERON:0001297 serosa of the uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_outer-uterine-myometrium outer uterine myometrium UBERON:0001296 uterine myometrium https://doi.org/10.1101/2021.01.02.425073 leaf +uterus https://purl.org/ccf/ASCTB-TEMP_right-anterior-body-of-uterus right anterior body of uterus UBERON:0009853 body of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_right-anterior-fundus-of-uterus right anterior fundus of uterus FMA:17561 Fundus of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_right-anterior-lower-uterine-segment right anterior lower uterine segment lower uterine segment leaf +uterus https://purl.org/ccf/ASCTB-TEMP_right-posterior-body-of-uterus right posterior body of uterus UBERON:0009853 body of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_right-posterior-fundus-of-uterus right posterior fundus of uterus FMA:17561 Fundus of uterus leaf +uterus https://purl.org/ccf/ASCTB-TEMP_right-posterior-lower-uterine-segment right posterior lower uterine segment lower uterine segment leaf +uterus https://purl.org/ccf/ASCTB-TEMP_superior-uterine-vein superior uterine vein UBERON:0000995 uterus leaf diff --git a/src/templates/hra-uterus-reports/manual_curation.tsv b/src/templates/hra-uterus-reports/manual_curation.tsv new file mode 100644 index 000000000..329630e7d --- /dev/null +++ b/src/templates/hra-uterus-reports/manual_curation.tsv @@ -0,0 +1,2 @@ +label definition reason similar_terms suggestion +columnar cell of endocervix A columnar epithelial cell that is part of the endocervical mucosa, forming a single layer of mucinous columnar epithelium lining the cervical canal. Cell types typically belong in the Cell Ontology (CL), not UBERON. UBERON references cell types from CL (e.g., CL:0000075 'columnar/cuboidal epithelial cell') but generally does not define individual cell types directly. The term has been assigned a UBERON ID (UBERON_8930209), suggesting it should be added to UBERON, but this conflicts with standard ontology design patterns. CL:0000075=columnar/cuboidal epithelial cell; UBERON:0012252=endocervical epithelium; UBERON:0000485=simple columnar epithelium Options: (1) Route to Cell Ontology as 'endocervical columnar cell' with is_a: CL:0000075 and part_of: UBERON:0012252 (endocervical epithelium); (2) If keeping in UBERON, create import from CL:0000075 as genus and add intersection_of: CL:0000075, intersection_of: part_of UBERON:0012252; (3) Mark as a tissue-level term rather than cell-level by treating it as a subtype of endocervical epithelium. Recommend curator review for appropriate ontology placement. diff --git a/src/templates/hra-uterus.template.tsv b/src/templates/hra-uterus.template.tsv new file mode 100644 index 000000000..99e7298b6 --- /dev/null +++ b/src/templates/hra-uterus.template.tsv @@ -0,0 +1,29 @@ +ID LABEL Definition def_xref is_a part_of develops_from In_subset Date Contributor Present_in_taxon Wikipedia_image xref +ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| SC % SC BFO:0000050 some % SC RO:0002202 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=| +http://purl.obolibrary.org/obo/UBERON_8930200 central anterior body of uterus The region of the body of uterus that is located along the midline on the anterior aspect of the uterine corpus, above the isthmus and below the orifices of the uterine tubes. https://purl.org/ccf/ASCTB-TEMP_central-anterior-body-of-uterus|PMID:29262069 UBERON:0034944 UBERON:0009853 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930201 central anterior fundus of uterus A zone of organ that is located in the medial anterior region of the superior dome-shaped portion of the uterus, positioned ventral to the midline of the uterine fundus. https://purl.org/ccf/ASCTB-TEMP_central-anterior-fundus-of-uterus|PMID:32567320 UBERON:0034944 UBERON:1200003 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930202 central anterior lower uterine segment A zone of organ that is located in the medial anterior region of the lower uterine segment, the narrowing transitional area between the uterine body and cervix that becomes more prominent during late pregnancy. https://purl.org/ccf/ASCTB-TEMP_central-anterior-lower-uterine-segment|PMID:13131157|PMID:27342045 UNKNOWN UNKNOWN http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930203 central posterior body of uterus The region of the body of uterus that is located along the midline on the posterior aspect of the uterine corpus, above the isthmus and below the orifices of the uterine tubes. https://purl.org/ccf/ASCTB-TEMP_central-posterior-body-of-uterus|PMID:29262069 UBERON:0034944 UBERON:0009853 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930204 central posterior fundus of uterus A zone of organ that is located in the medial posterior region of the superior dome-shaped portion of the uterus, positioned dorsal to the midline of the uterine fundus. https://purl.org/ccf/ASCTB-TEMP_central-posterior-fundus-of-uterus|PMID:32567320 UBERON:0034944 UBERON:1200003 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930205 central posterior lower uterine segment A zone of organ that is located in the medial posterior region of the lower uterine segment, the narrowing transitional area between the uterine body and cervix that becomes more prominent during late pregnancy. https://purl.org/ccf/ASCTB-TEMP_central-posterior-lower-uterine-segment|PMID:13131157|PMID:27342045 UNKNOWN UNKNOWN http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930210 connective tissue of the uterine serosa A portion of connective tissue that is part of a serosa of uterus. This connective tissue layer underlies the mesothelium and forms the structural component of the perimetrium. https://purl.org/ccf/ASCTB-TEMP_connective-tissue-of-the-uterine-serosa|PMID:42152375|PMID:42116181 UBERON:0002384 UBERON:0001297 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Perimetrium +http://purl.obolibrary.org/obo/UBERON_8930212 ectocervical stroma A connective tissue stroma that is part of the ectocervix, underlying the ectocervical epithelium and composed primarily of collagen and elastin fibers. https://purl.org/ccf/ASCTB-TEMP_ectocervical-stroma|PMID:33580897|PMID:8416558 UBERON:0003891 UBERON:0012249 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Cervix +http://purl.obolibrary.org/obo/UBERON_8930213 endocervical stroma A layer of connective tissue that forms the supportive framework of the endocervix, underlying the endocervical epithelium. https://purl.org/ccf/ASCTB-TEMP_endocervical-stroma|PMID:33580897|PMID:12877729 UBERON:0003891 UBERON:0000458 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930215 inferior uterine vein A vein that drains blood from the lower portion of the uterus, typically arising from the uterine venous plexus and draining into the internal iliac vein. https://purl.org/ccf/ASCTB-TEMP_inferior-uterine-vein|PMID:38493417|PMID:16996115 UBERON:0001638 UBERON:0000995 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930216 inner uterine myometrium An organ part of the myometrium that constitutes the inner one-third thickness of the uterine muscular wall, characterized by circularly oriented smooth muscle fibers and also termed the junctional or sub-endometrial layer. https://doi.org/10.1093/molehr/gat083|https://doi.org/10.1186/1471-2393-13-S1-S7|https://purl.org/ccf/ASCTB-TEMP_inner-uterine-myometrium|PMID:10374119|PMID:20551073 UBERON:0000064 UBERON:0001296 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Myometrium +http://purl.obolibrary.org/obo/UBERON_8930218 left anterior body of uterus The region of the body of uterus that is located on the left side of the anterior aspect of the uterine corpus, above the isthmus and below the orifices of the uterine tubes. https://purl.org/ccf/ASCTB-TEMP_left-anterior-body-of-uterus|PMID:29262069 UBERON:0034944 UBERON:0009853 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930219 left anterior fundus of uterus A zone of organ that is located in the left lateral anterior region of the superior dome-shaped portion of the uterus, on the ventral aspect of the left side of the uterine fundus. https://purl.org/ccf/ASCTB-TEMP_left-anterior-fundus-of-uterus|PMID:32567320 UBERON:0034944 UBERON:1200003 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930220 left anterior lower uterine segment A zone of organ that is located in the left lateral anterior region of the lower uterine segment, the narrowing transitional area between the uterine body and cervix on the ventral left side. https://purl.org/ccf/ASCTB-TEMP_left-anterior-lower-uterine-segment|PMID:13131157|PMID:27342045 UNKNOWN UNKNOWN http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930221 left posterior body of uterus The region of the body of uterus that is located on the left side of the posterior aspect of the uterine corpus, above the isthmus and below the orifices of the uterine tubes. https://purl.org/ccf/ASCTB-TEMP_left-posterior-body-of-uterus|PMID:29262069 UBERON:0034944 UBERON:0009853 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930222 left posterior fundus of uterus A zone of organ that is located in the left lateral posterior region of the superior dome-shaped portion of the uterus, on the dorsal aspect of the left side of the uterine fundus. https://purl.org/ccf/ASCTB-TEMP_left-posterior-fundus-of-uterus|PMID:32567320 UBERON:0034944 UBERON:1200003 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930223 left posterior lower uterine segment A zone of organ that is located in the left lateral posterior region of the lower uterine segment, the narrowing transitional area between the uterine body and cervix on the dorsal left side. https://purl.org/ccf/ASCTB-TEMP_left-posterior-lower-uterine-segment|PMID:13131157|PMID:27342045 UNKNOWN UNKNOWN http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930224 lower uterine segment A zone of the uterus that forms the inferior portion of the uterine body, located between the anatomic internal os and the uterine fundus, which becomes particularly distinct during pregnancy and labor. https://purl.org/ccf/ASCTB-TEMP_lower-uterine-segment|PMID:13131157|PMID:27342045 UBERON:0034944 UBERON:0000995 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 +http://purl.obolibrary.org/obo/UBERON_8930225 mesothelium of the uterine serosa A mesothelium that is part of a serosa of uterus. The mesothelium forms the simple squamous epithelial layer that covers the outer surface of the uterine serosa, also known as the perimetrium. https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-the-uterine-serosa|PMID:42152375|PMID:42116181 UBERON:0001136 UBERON:0001297 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Perimetrium +http://purl.obolibrary.org/obo/UBERON_8930226 outer uterine myometrium An organ part of the myometrium that constitutes the thick outer layer of the uterine muscular wall, characterized by longitudinally oriented smooth muscle fibers and serving as the major contractile tissue during parturition and abortion. https://doi.org/10.1101/2021.01.02.425073|https://purl.org/ccf/ASCTB-TEMP_outer-uterine-myometrium|PMID:20551073|PMID:32427986 UBERON:0000064 UBERON:0001296 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Myometrium +http://purl.obolibrary.org/obo/UBERON_8930227 right anterior body of uterus The region of the body of uterus that is located on the right side of the anterior aspect of the uterine corpus, above the isthmus and below the orifices of the uterine tubes. https://purl.org/ccf/ASCTB-TEMP_right-anterior-body-of-uterus|PMID:29262069 UBERON:0034944 UBERON:0009853 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930228 right anterior fundus of uterus A zone of organ that is located in the right lateral anterior region of the superior dome-shaped portion of the uterus, on the ventral aspect of the right side of the uterine fundus. https://purl.org/ccf/ASCTB-TEMP_right-anterior-fundus-of-uterus|PMID:32567320 UBERON:0034944 UBERON:1200003 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930229 right anterior lower uterine segment A zone of organ that is located in the right lateral anterior region of the lower uterine segment, the narrowing transitional area between the uterine body and cervix on the ventral right side. https://purl.org/ccf/ASCTB-TEMP_right-anterior-lower-uterine-segment|PMID:13131157|PMID:27342045 UNKNOWN UNKNOWN http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930230 right posterior body of uterus The region of the body of uterus that is located on the right side of the posterior aspect of the uterine corpus, above the isthmus and below the orifices of the uterine tubes. https://purl.org/ccf/ASCTB-TEMP_right-posterior-body-of-uterus|PMID:29262069 UBERON:0034944 UBERON:0009853 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930231 right posterior fundus of uterus A zone of organ that is located in the right lateral posterior region of the superior dome-shaped portion of the uterus, on the dorsal aspect of the right side of the uterine fundus. https://purl.org/ccf/ASCTB-TEMP_right-posterior-fundus-of-uterus|PMID:32567320 UBERON:0034944 UBERON:1200003 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930232 right posterior lower uterine segment A zone of organ that is located in the right lateral posterior region of the lower uterine segment, the narrowing transitional area between the uterine body and cervix on the dorsal right side. https://purl.org/ccf/ASCTB-TEMP_right-posterior-lower-uterine-segment|PMID:13131157|PMID:27342045 UNKNOWN UNKNOWN http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Uterus +http://purl.obolibrary.org/obo/UBERON_8930233 superior uterine vein A vein that drains blood from the upper portion of the uterus, typically arising from the uterine venous plexus near the uterine fundus and draining into the internal iliac vein or ovarian vein. https://purl.org/ccf/ASCTB-TEMP_superior-uterine-vein|PMID:38493417|PMID:28669893 UBERON:0001638 UBERON:0000995 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606