diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 38320a08d..8878e15fb 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -229,6 +229,17 @@ relationship: present_in_taxon NCBITaxon:33208 ! Metazoa relationship: present_in_taxon NCBITaxon:4751 ! Fungi property_value: seeAlso "https://github.com/OBOFoundry/COB/issues/51" xsd:anyURI +[Term] +id: UBERON:0000001 ! gross anatomical part +name: gross anatomical part +def: "Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells." [CARO:0001008] +xref: CARO:0001008 +disjoint_from: GO:0005623 ! cell +disjoint_from: GO:0110165 ! cellular anatomical entity +disjoint_from: UBERON:0000468 ! multicellular organism +is_a: UBERON:0000465 ! material anatomical entity +relationship: present_in_taxon NCBITaxon:2759 ! Eukaryota + [Term] id: UBERON:0000002 name: uterine cervix @@ -6811,7 +6822,7 @@ xref: TGMA:0001824 xref: VHOG:0001726 xref: XAO:0004001 xref: ZFA:0001487 -is_a: UBERON:0000465 ! material anatomical entity +is_a: UBERON:0000001 ! gross anatomical part relationship: has_quality PATO:0002198 ! quality of a substance relationship: part_of UBERON:0000468 {notes="this relationship may be too strong and may be weakened in future"} ! multicellular organism relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -7225,7 +7236,7 @@ xref: TAO:0000382 xref: TGMA:0001841 xref: XAO:0003162 xref: ZFA:0000382 -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0000001 ! gross anatomical part disjoint_from: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa @@ -101334,7 +101345,7 @@ xref: CALOHA:TS-2122 xref: EHDAA2:0003125 xref: FMA:292313 xref: MIAA:0000019 -is_a: UBERON:0000465 ! material anatomical entity +is_a: UBERON:0000001 ! gross anatomical part relationship: capable_of GO:0032502 ! developmental process relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa @@ -156284,7 +156295,6 @@ synonym: "midline birth canal" RELATED [] intersection_of: UBERON:0000996 ! vagina intersection_of: connected_to UBERON:0013523 ! lateral vaginal canal intersection_of: intersects_midsagittal_plane_of UBERON:0003975 ! internal female genitalia -relationship: channel_for UBERON:0000922 ! embryo relationship: in_taxon NCBITaxon:9263 {editor="cjm"} ! Metatheria [Term] @@ -187555,7 +187565,7 @@ def: "Material anatomical entity that forms the outermost boundary of an anatomi subset: common_anatomy xref: AAO:0010270 xref: ZFA:0005594 -is_a: UBERON:0000465 ! material anatomical entity +is_a: UBERON:0000001 ! gross anatomical part relationship: bounding_layer_of UBERON:0000061 ! anatomical structure relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa @@ -220609,7 +220619,7 @@ relationship: in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6040005 name: insect synaptic neuropil def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] -is_a: UBERON:0000465 ! material anatomical entity +is_a: UBERON:0000001 ! gross anatomical part relationship: in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002606 ! neuropil