From cdde8c3fd95d558d4f4f8fbe022e5bb2f66958b7 Mon Sep 17 00:00:00 2001 From: John Duggan Date: Thu, 13 Nov 2025 11:12:57 -0500 Subject: [PATCH 1/4] Remove Poetry --- .github/workflows/build-test.yml | 10 +- .github/workflows/nova-common.yml | 2 +- .pre-commit-config.yaml | 2 +- DEVELOPMENT.md | 23 +- build_docs.sh | 4 +- dockerfiles/Dockerfile | 29 +- docs/conf.py | 2 +- pixi.lock | 1304 +++++++++++++++++++++++++ poetry.lock | 1481 ----------------------------- pyproject.toml | 59 +- 10 files changed, 1377 insertions(+), 1539 deletions(-) create mode 100644 pixi.lock delete mode 100644 poetry.lock diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml index c9fd450..8ddc17d 100644 --- a/.github/workflows/build-test.yml +++ b/.github/workflows/build-test.yml @@ -35,14 +35,14 @@ jobs: file: dockerfiles/Dockerfile load: true - name: Run ruff check - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff check + run: docker run --rm ${{ steps.build.outputs.imageid }} ruff check - name: Run format check - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff format --check + run: docker run --rm ${{ steps.build.outputs.imageid }} ruff format --check - name: Run mypy - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run mypy . + run: docker run --rm ${{ steps.build.outputs.imageid }} mypy . - name: Unit tests - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run pytest + run: docker run --rm ${{ steps.build.outputs.imageid }} pytest - name: Run coverage - run: docker run --rm ${{ steps.build.outputs.imageid }} sh -c "poetry run coverage run && poetry run coverage report" + run: docker run --rm ${{ steps.build.outputs.imageid }} sh -c "coverage run && coverage report" - name: Docs test run: docker run --rm ${{ steps.build.outputs.imageid }} bash build_docs.sh diff --git a/.github/workflows/nova-common.yml b/.github/workflows/nova-common.yml index 8a7528a..2741977 100644 --- a/.github/workflows/nova-common.yml +++ b/.github/workflows/nova-common.yml @@ -58,4 +58,4 @@ jobs: file: dockerfiles/Dockerfile load: true - name: Publish - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry publish -u __token__ -p ${PYPI_API_TOKEN} + run: docker run --rm ${{ steps.build.outputs.imageid }} sh -c "hatch build && hatch publish -u __token__ -a ${PYPI_API_TOKEN}" diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 302be76..b2e77ee 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -20,7 +20,7 @@ repos: hooks: - id: mypy name: mypy - entry: poetry run mypy . + entry: pixi run mypy . language: system types: [python] verbose: true diff --git a/DEVELOPMENT.md b/DEVELOPMENT.md index 104dd1c..855ad4c 100644 --- a/DEVELOPMENT.md +++ b/DEVELOPMENT.md @@ -5,11 +5,10 @@ the NOVA Common project. ## Starting from the template -- Add other Python dependencies you project need with `poetry add xxx` or `poetry add --dev xxx` +- Add other Python dependencies you project need with [Pixi add](https://pixi.sh/dev/reference/cli/pixi/add/#pixi-add). - Modify Dockerfile as needed. Please make sure it can still run as non-root (we use it in GitHub Actions and in general this is a good practice). -- install pre-commit (if not already installed) - `pip install pre-commit` -- activate `pre-commit` for your project: `cd && pre-commit install` +- install pre-commit (if not already installed) - `pixi run pre-commit install` - finally, clear the content of this section and add the description of your project. You can keep/adjust instructions below @@ -23,30 +22,28 @@ to create an issue [in this repo](https://code.ornl.gov/ndip/project-templates/p ## Installation ```commandline -pip install poetry - -poetry install +pixi install ``` ## Formatting ```commandline -poetry run ruff format +pixi run ruff format ``` ## Linting ```commandline -poetry run ruff check -poetry run mypy . +pixi run ruff check +pixi run mypy . ``` ## Testing ```commandline -poetry run pytest +pixi run pytest ``` or, with coverage ```commandline -poetry run coverage run -poetry run coverage report +pixi run coverage run +pixi run coverage report ``` ## Updating project from template @@ -55,7 +52,7 @@ This project was created from a [template](https://code.ornl.gov/ndip/project-te can try to update the project to incorporate these changes. Just enter the project folder, make sure `git status` shows it clean, and run: ``` -poetry run copier update +copier update ``` See [here](https://copier.readthedocs.io/en/stable/updating/#updating-a-project) for more information. diff --git a/build_docs.sh b/build_docs.sh index 18cf838..5b610ea 100755 --- a/build_docs.sh +++ b/build_docs.sh @@ -1,2 +1,2 @@ -SPHINX_APIDOC_OPTIONS=members,show-inheritance poetry run sphinx-apidoc -o docs/source src -poetry run sphinx-build -M html docs docs/_build +SPHINX_APIDOC_OPTIONS=members,show-inheritance sphinx-apidoc -o docs/source src +sphinx-build -M html docs docs/_build diff --git a/dockerfiles/Dockerfile b/dockerfiles/Dockerfile index e1231b2..a7c113a 100644 --- a/dockerfiles/Dockerfile +++ b/dockerfiles/Dockerfile @@ -1,16 +1,29 @@ FROM --platform=amd64 python:3.10-slim AS source -# make sure image can run as non-root user -ENV POETRY_CACHE_DIR=/poetry/.cache -ENV POETRY_CONFIG_DIR=/poetry/.config -ENV POETRY_HOME=/poetry +RUN apt update && apt install -y curl wget -RUN pip install poetry COPY . /src WORKDIR /src -RUN poetry install -RUN poetry build --format=wheel +RUN curl -fsSL https://pixi.sh/install.sh | sh +ENV PATH="/root/.pixi/bin:${PATH}" +RUN pixi install +SHELL [ "pixi", "run" ] +ENTRYPOINT [ "pixi", "run" ] + +RUN chmod og+rwX -R /src /.cache /.mozilla + +FROM --platform=amd64 python:3.10-slim AS package + +RUN apt update && apt install -y curl + +COPY . /src +WORKDIR /src + +RUN curl -fsSL https://pixi.sh/install.sh | sh +ENV PATH="/root/.pixi/bin:${PATH}" +RUN pixi install -e production +SHELL [ "pixi", "run" ] +ENTRYPOINT [ "pixi", "run" ] -RUN chmod og+rwX -R /poetry RUN chmod og+rwX -R /src diff --git a/docs/conf.py b/docs/conf.py index 66097a2..382bd84 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -17,7 +17,7 @@ copyright = "2024, ORNL" with open("../pyproject.toml", "rb") as toml_file: toml_dict = tomli.load(toml_file) - release = toml_dict["tool"]["poetry"]["version"] + release = toml_dict["project"]["version"] # -- General configuration --------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 0000000..a37f96a --- /dev/null +++ b/pixi.lock @@ -0,0 +1,1304 @@ +version: 6 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + indexes: + - https://pypi.org/simple + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.11.12-hbd8a1cb_0.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-75.1-he02047a_0.conda + - 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-[[package]] -name = "wcwidth" -version = "0.2.13" -description = "Measures the displayed width of unicode strings in a terminal" -optional = false -python-versions = "*" -groups = ["dev"] -files = [ - {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, - {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, -] - -[metadata] -lock-version = "2.1" -python-versions = "^3.10" -content-hash = "d185af8bb5a0705f09a1ac58bcbaca8ee7819e8fbb8bba68581cf1056cb7ddf3" diff --git a/pyproject.toml b/pyproject.toml index 06069eb..d9a3fd7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,29 +1,47 @@ -[tool.poetry] +[project] name = "nova-common" version = "0.3.0" description = "NOVA Common Project" -authors = ["Sergey Yakubov yakubovs@ornl.gov"] +authors = [{ name = "Sergey Yakubov", email = "yakubovs@ornl.gov"}] readme = "README.md" license = "MIT" keywords = ["NDIP", "NOVA", "python"] +requires-python = ">=3.10,<3.14" -packages = [ - { include = "nova", from = "src" } -] +[tool.pixi.workspace] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64"] -include = [ - "xml/*.xml" -] +[tool.pixi.environments] +default = {features = ["dev"], solve-group = "default"} +production = {features = [], solve-group = "default"} +[tool.pixi.dependencies] + +[tool.pixi.pypi-dependencies] +nova-common = { path = ".", editable = true } +pydantic = ">=2.11.4" +blinker = ">=1.9.0" + +[tool.pixi.feature.dev.pypi-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +pytest-asyncio = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" -[tool.poetry.dependencies] -python = "^3.10" -pydantic = "^2.11.4" -blinker = "^1.9.0" [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" +[tool.hatch.build.targets.wheel] +packages = ["src/nova"] [tool.pytest.ini_options] testpaths = ["tests"] @@ -77,16 +95,3 @@ omit = [ [tool.coverage.run] command_line = "-m pytest --junit-xml=reports/junit.xml" data_file = "reports/.coverage" - -[tool.poetry.group.dev.dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -pytest-asyncio = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" From 87548e07745216b7953cf1866cf1dec221a1159a Mon Sep 17 00:00:00 2001 From: John Duggan Date: Thu, 13 Nov 2025 11:15:51 -0500 Subject: [PATCH 2/4] Remove chmod on nonexistent dirs --- dockerfiles/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dockerfiles/Dockerfile b/dockerfiles/Dockerfile index a7c113a..d05b76f 100644 --- a/dockerfiles/Dockerfile +++ b/dockerfiles/Dockerfile @@ -11,7 +11,7 @@ RUN pixi install SHELL [ "pixi", "run" ] ENTRYPOINT [ "pixi", "run" ] -RUN chmod og+rwX -R /src /.cache /.mozilla +RUN chmod og+rwX -R /src FROM --platform=amd64 python:3.10-slim AS package From b9f8590a0833c4df6434687dee62bb13c6125f49 Mon Sep 17 00:00:00 2001 From: John Duggan Date: Thu, 13 Nov 2025 11:25:59 -0500 Subject: [PATCH 3/4] Exclude .pixi from linting --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index d9a3fd7..a4bcb26 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,7 @@ python_files = ["test*.py"] norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] [tool.ruff] +exclude = [".pixi"] line-length = 120 [tool.ruff.lint] From a135837ba5c7cdea267a2eb7f31cb99afda78a80 Mon Sep 17 00:00:00 2001 From: John Duggan Date: Thu, 13 Nov 2025 11:38:44 -0500 Subject: [PATCH 4/4] Bump lockfile --- pixi.lock | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pixi.lock b/pixi.lock index a37f96a..d584a1e 100644 --- a/pixi.lock +++ b/pixi.lock @@ -751,7 +751,7 @@ packages: - pypi: ./ name: nova-common version: 0.3.0 - sha256: 5d78ae2999d7174f56677dc20a36cce67c246314f809c58c17e5fee5616a037e + sha256: 11747559cddd4dd1b25825245b3c10118475ff28407ceab01975c0c328bcb1a1 requires_python: '>=3.10,<3.14' editable: true - conda: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.0-h26f9b46_0.conda