py-rocket-base/environment.yml at main · nmfs-opensci/py-rocket-base · GitHub

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name: py-rocket-base

channels:
  - conda-forge
  - nodefaults

dependencies:
  # Core JupyterHub packages
  - python~=3.11.0
  # most of the core libraries are in the pangeo-notebook meta package
  # https://github.com/conda-forge/pangeo-notebook-feedstock?tab=readme-ov-file
  # https://anaconda.org/channels/conda-forge/packages/pangeo-notebook/overview
  - pangeo-notebook=2026.01.21
  - pip
  - jupyter-resource-usage
  - gh-scoped-creds==4.1

  # Some more basic UI/UX
  - conda-lock
  - pigz
  - python-dotenv

  # R/RStudio Support
  - jupyter-rsession-proxy

  # VS Code support
  - jupyter-vscode-proxy
  - code-server=4.98.0  # Pin to prevent downgrades when conda env is updated

  # https://syncthing.net/ provides a dropbox-like interface for syncing directories across users,
  # hubs and machines. Used along with `jupyter-syncthing-proxy`.
  #- jupyter-syncthing-proxy==1.0.3
  #- syncthing~=1.22.1

  # Extra Jupyter tools
  - jupyterlab-git
  #- jupyter-ai # was causing a memory leak so out for now
  - jupyter-book
  - jupyter-offlinenotebook
  - jupyter-sshd-proxy
  - jupyterlab-favorites
  - jupyterlab-geojson
  - jupyterlab-h5web
  - jupyterlab-myst
  - jupytext # no jupytext until quarto bug that deletes content is fixed
  - nbdime
  - escapism

  # JupyterBook Addons
  - sphinx
  - sphinxcontrib-bibtex

  # More git tools from github-cli
  - gh

  # Resolves warning "No ICDs were found": https://github.com/CryoInTheCloud/hub-image/issues/50
  - ocl-icd-system
  # needed for Linux desktop to work
  - websockify>=0.10
  # Includes new subcommands (`switch` & `restore`) and vulnerability fixes
  # over the version available via ubuntu sources
  - git>=2.39

  # Not all packages will be available from conda-forge, we install from pip when we need to.
  - pip
  - pip:
    # Access linux desktop from inside JupyterHub
    - jupyter-remote-desktop-proxy
    # Create urls to open files directly in hub
    - jupyterlab-open-url-parameter
    # Open quarto files in JupyterLab
    - jupyterlab-quarto