2525iflogger = logging .getLogger ('interface' )
2626
2727
28- < << << << HEAD
2928class WarpPointsInputSpec (BaseInterfaceInputSpec ):
3029 points = File (exists = True , mandatory = True ,
3130 desc = ('file containing the point set' ))
@@ -43,6 +42,7 @@ class WarpPointsOutputSpec(TraitedSpec):
4342
4443
4544class WarpPoints (BaseInterface ):
45+
4646 """
4747 Applies a displacement field to a point set in vtk
4848
@@ -57,6 +57,7 @@ class WarpPoints(BaseInterface):
5757 """
5858 input_spec = WarpPointsInputSpec
5959 output_spec = WarpPointsOutputSpec
60+ _redirect_x = True
6061
6162 def _gen_fname (self , in_file , suffix = 'generated' , ext = None ):
6263 import os .path as op
@@ -114,7 +115,7 @@ def _run_interface(self, runtime):
114115 ras2vox = np .linalg .inv (vox2ras )
115116 origin = affine [0 :3 , 3 ]
116117 voxpoints = np .array ([np .dot (ras2vox ,
117- (p - origin )) for p in points ])
118+ (p - origin )) for p in points ])
118119
119120 warps = []
120121 for axis in warp_dims :
@@ -151,22 +152,12 @@ def _list_outputs(self):
151152 return outputs
152153
153154
154- class P2PDistanceInputSpec (BaseInterfaceInputSpec ):
155- == == == =
156155class ComputeMeshWarpInputSpec (BaseInterfaceInputSpec ):
157- > >> >> >> master
158156 surface1 = File (exists = True , mandatory = True ,
159157 desc = ('Reference surface (vtk format) to which compute '
160158 'distance.' ))
161159 surface2 = File (exists = True , mandatory = True ,
162- << << << < HEAD
163- desc = ("Test surface (vtk format) from which compute "
164- "distance." ))
165- weighting = traits .Enum ("none" , "surface" , usedefault = True ,
166- desc = ('"none": no weighting is performed, '
167- '"surface": edge distance is weighted by the'
168- ' corresponding surface area' ))
169- == == == =
160+
170161 desc = ('Test surface (vtk format) from which compute '
171162 'distance.' ))
172163 metric = traits .Enum ('euclidean' , 'sqeuclidean' , usedefault = True ,
@@ -180,7 +171,6 @@ class ComputeMeshWarpInputSpec(BaseInterfaceInputSpec):
180171 'to surface2' )
181172 out_file = File ('distance.npy' , usedefault = True ,
182173 desc = 'numpy file keeping computed distances and weights' )
183- >> >> >> > master
184174
185175
186176class ComputeMeshWarpOutputSpec (TraitedSpec ):
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