@@ -32,7 +32,7 @@ To view the Neurodocker help message
3232 image. The package manager is ``apt `` or ``yum ``, depending on the base
3333 image.
34342. Next, users should configure the container to fit their needs. This includes
35- installing neuroimaing software, installing packages from the chosen package
35+ installing neuroimaging software, installing packages from the chosen package
3636 manager, installing Python and Python packages, copying files from the local
3737 machine into the container, and other operations. The list of supported
3838 neuroimaging software packages is available in the ``neurodocker `` help
@@ -74,22 +74,24 @@ The Dockerfile can be saved and used to build the Docker image
7474Use NeuroDebian
7575---------------
7676
77- This example install AFNI and ANTs from the NeuoDebian repositories. It also
77+ This example installs AFNI and ANTs from the NeuroDebian repositories. It also
7878installs ``git `` and ``vim ``.
7979::
80- $ docker run --rm kaczmarj/neurodocker:v0.3.2 generate --base neurodebian:stretch --pkg-manager apt --install afni ants git vim
80+ $ docker run --rm kaczmarj/neurodocker:v0.3.2 generate \
81+ --base neurodebian:stretch --pkg-manager apt \
82+ --install afni ants git vim
8183
8284Note: the ``--install `` option will install software using the package manager.
8385Because the NeuroDebian repositories are enabled in the chosen base image, AFNI
84- and ANTs may be installed using the package manager. git and vim are available
85- in the default repositories.
86+ and ANTs may be installed using the package manager. `` git `` and `` vim `` are
87+ available in the default repositories.
8688
8789
8890Other examples
8991--------------
9092
9193Create a container with ``dcm2niix ``, Nipype, and jupyter notebook. Install
92- Miniconda as a non-root user, and activate the miniconda environment upon
94+ Miniconda as a non-root user, and activate the Miniconda environment upon
9395running the container.
9496::
9597 $ docker run --rm kaczmarj/neurodocker:v0.3.2 generate \
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