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Rename extra test, add auto test
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+108
-124
lines changed

2 files changed

+108
-124
lines changed

‎nipype/interfaces/afni/tests/test_auto_Deconvolve.py‎

Lines changed: 108 additions & 124 deletions
Original file line numberDiff line numberDiff line change
@@ -4,137 +4,121 @@
44

55

66
def test_Deconvolve_inputs():
7-
input_map = dict(STATmask=dict(argstr='-STATmask %s',
8-
),
9-
TR_1D=dict(argstr='-TR_1D %f',
10-
),
11-
allzero_OK=dict(argstr='-allzero_OK',
12-
),
13-
args=dict(argstr='%s',
14-
),
15-
automask=dict(argstr='-automask',
16-
),
17-
cbucket=dict(argstr='-cbucket %s',
18-
),
19-
censor=dict(argstr='-censor %s',
20-
),
21-
dmbase=dict(argstr='-dmbase',
22-
),
23-
dname=dict(argstr='-D%s=%s',
24-
),
25-
environ=dict(nohash=True,
26-
usedefault=True,
27-
),
28-
force_TR=dict(argstr='-force_TR %f',
29-
position=0,
30-
),
31-
fout=dict(argstr='-fout',
32-
),
33-
global_times=dict(argstr='-global_times',
34-
xor=['local_times'],
35-
),
36-
glt_label=dict(argstr='-glt_label %d %s...',
37-
position=-1,
38-
requires=['gltsym'],
39-
),
40-
gltsym=dict(argstr="-gltsym 'SYM: %s'...",
41-
position=-2,
42-
),
43-
goforit=dict(argstr='-GOFORIT %i',
44-
),
45-
ignore_exception=dict(deprecated='1.0.0',
46-
nohash=True,
47-
usedefault=True,
48-
),
49-
in_files=dict(argstr='-input %s',
50-
copyfile=False,
51-
position=1,
52-
sep=' ',
53-
),
54-
input1D=dict(argstr='-input1D %s',
55-
),
56-
jobs=dict(argstr='-jobs %d',
57-
),
58-
legendre=dict(argstr='-legendre',
59-
),
60-
local_times=dict(argstr='-local_times',
61-
xor=['global_times'],
62-
),
63-
mask=dict(argstr='-mask %s',
64-
),
65-
noblock=dict(argstr='-noblock',
66-
),
67-
nocond=dict(argstr='-nocond',
68-
),
69-
nodmbase=dict(argstr='-nodmbase',
70-
),
71-
nolegendre=dict(argstr='-nolegendre',
72-
),
73-
nosvd=dict(argstr='-nosvd',
74-
),
75-
num_glt=dict(argstr='-num_glt %d',
76-
position=-3,
77-
),
78-
num_stimts=dict(argstr='-num_stimts %d',
79-
position=-6,
80-
),
81-
num_threads=dict(nohash=True,
82-
usedefault=True,
83-
),
84-
ortvec=dict(argstr='-ortvec %s %s',
85-
),
86-
out_file=dict(argstr='-bucket %s',
87-
),
88-
outputtype=dict(),
89-
polort=dict(argstr='-polort %d',
90-
),
91-
rmsmin=dict(argstr='-rmsmin %f',
92-
),
93-
rout=dict(argstr='-rout',
94-
),
95-
sat=dict(argstr='-sat',
96-
xor=['trans'],
97-
),
98-
singvals=dict(argstr='-singvals',
99-
),
100-
stim_label=dict(argstr='-stim_label %d %s...',
101-
position=-4,
102-
requires=['stim_times'],
103-
),
104-
stim_times=dict(argstr="-stim_times %d %s '%s'...",
105-
position=-5,
106-
),
107-
stim_times_subtract=dict(argstr='-stim_times_subtract %f',
108-
),
109-
svd=dict(argstr='-svd',
110-
),
111-
terminal_output=dict(deprecated='1.0.0',
112-
nohash=True,
113-
),
114-
tout=dict(argstr='-tout',
115-
),
116-
trans=dict(argstr='-trans',
117-
xor=['sat'],
118-
),
119-
vout=dict(argstr='-vout',
120-
),
121-
x1D=dict(argstr='-x1D %s',
122-
),
123-
x1D_stop=dict(argstr='-x1D_stop',
124-
),
7+
input_map = dict(
8+
STATmask=dict(argstr='-STATmask %s', ),
9+
TR_1D=dict(argstr='-TR_1D %f', ),
10+
allzero_OK=dict(argstr='-allzero_OK', ),
11+
args=dict(argstr='%s', ),
12+
automask=dict(argstr='-automask', ),
13+
cbucket=dict(argstr='-cbucket %s', ),
14+
censor=dict(argstr='-censor %s', ),
15+
dmbase=dict(argstr='-dmbase', ),
16+
dname=dict(argstr='-D%s=%s', ),
17+
environ=dict(
18+
nohash=True,
19+
usedefault=True,
20+
),
21+
force_TR=dict(
22+
argstr='-force_TR %f',
23+
position=0,
24+
),
25+
fout=dict(argstr='-fout', ),
26+
global_times=dict(
27+
argstr='-global_times',
28+
xor=['local_times'],
29+
),
30+
glt_label=dict(
31+
argstr='-glt_label %d %s...',
32+
position=-1,
33+
requires=['gltsym'],
34+
),
35+
gltsym=dict(
36+
argstr="-gltsym 'SYM: %s'...",
37+
position=-2,
38+
),
39+
goforit=dict(argstr='-GOFORIT %i', ),
40+
ignore_exception=dict(
41+
deprecated='1.0.0',
42+
nohash=True,
43+
usedefault=True,
44+
),
45+
in_files=dict(
46+
argstr='-input %s',
47+
copyfile=False,
48+
position=1,
49+
sep=' ',
50+
),
51+
input1D=dict(argstr='-input1D %s', ),
52+
jobs=dict(argstr='-jobs %d', ),
53+
legendre=dict(argstr='-legendre', ),
54+
local_times=dict(
55+
argstr='-local_times',
56+
xor=['global_times'],
57+
),
58+
mask=dict(argstr='-mask %s', ),
59+
noblock=dict(argstr='-noblock', ),
60+
nocond=dict(argstr='-nocond', ),
61+
nodmbase=dict(argstr='-nodmbase', ),
62+
nolegendre=dict(argstr='-nolegendre', ),
63+
nosvd=dict(argstr='-nosvd', ),
64+
num_glt=dict(
65+
argstr='-num_glt %d',
66+
position=-3,
67+
),
68+
num_stimts=dict(
69+
argstr='-num_stimts %d',
70+
position=-6,
71+
),
72+
num_threads=dict(
73+
nohash=True,
74+
usedefault=True,
75+
),
76+
ortvec=dict(argstr='ortvec %s', ),
77+
out_file=dict(argstr='-bucket %s', ),
78+
outputtype=dict(),
79+
polort=dict(argstr='-polort %d', ),
80+
rmsmin=dict(argstr='-rmsmin %f', ),
81+
rout=dict(argstr='-rout', ),
82+
sat=dict(
83+
argstr='-sat',
84+
xor=['trans'],
85+
),
86+
singvals=dict(argstr='-singvals', ),
87+
stim_label=dict(
88+
argstr='-stim_label %d %s...',
89+
position=-4,
90+
requires=['stim_times'],
91+
),
92+
stim_times=dict(
93+
argstr="-stim_times %d %s '%s'...",
94+
position=-5,
95+
),
96+
stim_times_subtract=dict(argstr='-stim_times_subtract %f', ),
97+
svd=dict(argstr='-svd', ),
98+
terminal_output=dict(
99+
deprecated='1.0.0',
100+
nohash=True,
101+
),
102+
tout=dict(argstr='-tout', ),
103+
trans=dict(
104+
argstr='-trans',
105+
xor=['sat'],
106+
),
107+
vout=dict(argstr='-vout', ),
108+
x1D=dict(argstr='-x1D %s', ),
109+
x1D_stop=dict(argstr='-x1D_stop', ),
125110
)
126111
inputs = Deconvolve.input_spec()
127112

128113
for key, metadata in list(input_map.items()):
129114
for metakey, value in list(metadata.items()):
130115
assert getattr(inputs.traits()[key], metakey) == value
131-
132-
133116
def test_Deconvolve_outputs():
134-
output_map = dict(cbucket=dict(),
135-
out_file=dict(),
136-
reml_script=dict(),
137-
x1D=dict(),
117+
output_map = dict(
118+
cbucket=dict(),
119+
out_file=dict(),
120+
reml_script=dict(),
121+
x1D=dict(),
138122
)
139123
outputs = Deconvolve.output_spec()
140124

nipype/interfaces/afni/tests/test_deconvolve.py renamed to nipype/interfaces/afni/tests/test_extra_Deconvolve.py

File renamed without changes.

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