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lines changed Original file line number Diff line number Diff line change @@ -603,9 +603,13 @@ class EddyInputSpec(FSLCommandInputSpec):
603603 in_topup_movpar = File (
604604 exists = True ,
605605 requires = ["in_topup_fieldcoef" ],
606- desc = "Topup results file containing the movement parameters" ,
606+ desc = "Topup results file containing the movement parameters (movpar.txt)" ,
607+ )
608+ field = File (
609+ exists = True ,
610+ argstr = "--field=%s" ,
611+ desc = ("Non-topup derived fieldmap scaled in Hz" ),
607612 )
608- field = File (argstr = "--field=%s" , desc = ("Non-topup derived fieldmap scaled in Hz" ))
609613 field_mat = File (
610614 exists = True ,
611615 argstr = "--field_mat=%s" ,
@@ -725,12 +729,14 @@ class EddyInputSpec(FSLCommandInputSpec):
725729 requires = ["repol" ],
726730 min_ver = "5.0.10" ,
727731 )
728- mb = traits .Int (argstr = "--mb=%s" , desc = "Multi-band factor" , min_ver = "5.0.10" )
729- mb_offs = traits .Enum (
732+ multiband_factor = traits .Int (
733+ argstr = "--mb=%s" , desc = "Multi-band factor" , min_ver = "5.0.10"
734+ )
735+ multiband_offset = traits .Enum (
730736 0 ,
731737 1 ,
732738 - 1 ,
733- argstr = "--mb_offs=%s " ,
739+ argstr = "--mb_offs=%d " ,
734740 desc = (
735741 "Multi-band offset (-1 if bottom slice removed, 1 if " "top slice removed"
736742 ),
@@ -744,7 +750,7 @@ class EddyInputSpec(FSLCommandInputSpec):
744750 requires = ["use_cuda" ],
745751 min_ver = "5.0.11" ,
746752 )
747- s2v_niter = traits .Int (
753+ slice2vol_iterations = traits .Int (
748754 argstr = "--s2v_niter=%s" ,
749755 desc = "Number of iterations for slice-to-vol" ,
750756 requires = ["mporder" ],
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