remove _gen_filename

Author: salma1601

nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py

@@ -16,13 +16,18 @@ def test_NwarpAdjust_inputs():
             usedefault=True,
         ),
         in_files=dict(argstr='-source %s', ),
+        num_threads=dict(
+            nohash=True,
+            usedefault=True,
+        ),
         out_file=dict(
             argstr='-prefix %s',
             keep_extension=True,
             name_source='in_files',
             name_template='%s_NwarpAdjust',
             requires=['in_files'],
         ),
+        outputtype=dict(),
         terminal_output=dict(
             deprecated='1.0.0',
             nohash=True,

nipype/interfaces/afni/utils.py

@@ -1511,7 +1511,7 @@ def _list_outputs(self):
         return outputs
 
 
-class NwarpAdjustInputSpec(CommandLineInputSpec):
+class NwarpAdjustInputSpec(AFNICommandInputSpec):
     warps = InputMultiPath(
         File(exists=True),
         minlen=5,
@@ -1569,17 +1569,9 @@ def _parse_inputs(self, skip=None):
             skip += ['out_file']
         return super(NwarpAdjust, self)._parse_inputs(skip=skip)
 
-    def _gen_filename(self, name):
-        if name == 'out_file':
-            return self._list_outputs()[name]
-        return None
-
     def _list_outputs(self):
         outputs = self.output_spec().get()
 
-        if self.inputs.out_file:
-            outputs['out_file'] = os.path.abspath(self.inputs.out_file)
-
         if self.inputs.in_files:
             if self.inputs.out_file:
                 outputs['out_file'] = os.path.abspath(self.inputs.out_file)
@@ -1591,7 +1583,6 @@ def _list_outputs(self):
                     ext = ext2 + ext
                 outputs['out_file'] = os.path.abspath(
                     basename_noext + '_NwarpAdjust' + ext)
-
         return outputs