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NuClick

Clicks inside the nuclei or draw a scribble inside glands to obtain segmentation. This is Keras implementation of NuClick (link to paper )

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Inference:

Download weights for nucleus segmentation from here and save it inside weights folder:

  • Set application in the config.py
  • Run test.py to use the interface.

To apply it on the existing detection points:

  • Save points in the .mat format: first column x
  • Define directories in the config.py: mat_path = '' , images_path = '' and save_path = ''
  • run test_all_images