From 815ae539f57b7ced245a562c4566162c6ff7b83c Mon Sep 17 00:00:00 2001 From: louis Date: Tue, 28 Apr 2026 21:04:35 +0200 Subject: [PATCH 01/13] Fix meta comment --- nf_core/assets/EDAM_1.25.csv | 3474 ++++++++++++++++++++++++++++++ nf_core/modules/lint/__init__.py | 28 +- nf_core/modules/modules_utils.py | 18 +- 3 files changed, 3506 insertions(+), 14 deletions(-) create mode 100644 nf_core/assets/EDAM_1.25.csv diff --git a/nf_core/assets/EDAM_1.25.csv b/nf_core/assets/EDAM_1.25.csv new file mode 100644 index 0000000000..497367c8f9 --- /dev/null +++ b/nf_core/assets/EDAM_1.25.csv @@ -0,0 +1,3474 @@ +Class ID,Preferred Label,File extension +http://edamontology.org/data_0005,Resource type, +http://edamontology.org/data_0006,Data, +http://edamontology.org/data_0007,Tool, +http://edamontology.org/data_0581,Database, +http://edamontology.org/data_0582,Ontology, +http://edamontology.org/data_0583,Directory metadata, +http://edamontology.org/data_0831,MeSH vocabulary, 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+http://edamontology.org/data_1239,Restriction digest, +http://edamontology.org/data_1240,PCR primers, +http://edamontology.org/data_1241,vectorstrip cloning vector definition file, +http://edamontology.org/data_1242,Primer3 internal oligo mishybridizing library, +http://edamontology.org/data_1243,Primer3 mispriming library file, +http://edamontology.org/data_1244,primersearch primer pairs sequence record, +http://edamontology.org/data_1245,Sequence cluster (protein), +http://edamontology.org/data_1246,Sequence cluster (nucleic acid), +http://edamontology.org/data_1249,Sequence length, +http://edamontology.org/data_1250,Word size, +http://edamontology.org/data_1251,Window size, +http://edamontology.org/data_1252,Sequence length range, +http://edamontology.org/data_1253,Sequence information report, +http://edamontology.org/data_1254,Sequence property, +http://edamontology.org/data_1255,Sequence features, +http://edamontology.org/data_1256,Sequence features (comparative), +http://edamontology.org/data_1257,Sequence property (protein), +http://edamontology.org/data_1258,Sequence property (nucleic acid), +http://edamontology.org/data_1259,Sequence complexity report, +http://edamontology.org/data_1260,Sequence ambiguity report, +http://edamontology.org/data_1261,Sequence composition report, +http://edamontology.org/data_1262,Peptide molecular weight hits, +http://edamontology.org/data_1263,Base position variability plot, +http://edamontology.org/data_1264,Sequence composition table, +http://edamontology.org/data_1265,Base frequencies table, +http://edamontology.org/data_1266,Base word frequencies table, +http://edamontology.org/data_1267,Amino acid frequencies table, +http://edamontology.org/data_1268,Amino acid word frequencies table, +http://edamontology.org/data_1269,DAS sequence feature annotation, +http://edamontology.org/data_1270,Feature table, +http://edamontology.org/data_1274,Map, +http://edamontology.org/data_1276,Nucleic acid features, +http://edamontology.org/data_1277,Protein features, +http://edamontology.org/data_1278,Genetic map, +http://edamontology.org/data_1279,Sequence map, +http://edamontology.org/data_1280,Physical map, +http://edamontology.org/data_1281,Sequence signature map, +http://edamontology.org/data_1283,Cytogenetic map, +http://edamontology.org/data_1284,DNA transduction map, +http://edamontology.org/data_1285,Gene map, +http://edamontology.org/data_1286,Plasmid map, +http://edamontology.org/data_1288,Genome map, +http://edamontology.org/data_1289,Restriction map, +http://edamontology.org/data_1290,InterPro compact match image, +http://edamontology.org/data_1291,InterPro detailed match image, +http://edamontology.org/data_1292,InterPro architecture image, +http://edamontology.org/data_1293,SMART protein schematic, +http://edamontology.org/data_1294,GlobPlot domain image, +http://edamontology.org/data_1298,Sequence motif matches, +http://edamontology.org/data_1299,Sequence features (repeats), +http://edamontology.org/data_1300,Gene and transcript structure (report), +http://edamontology.org/data_1301,Mobile genetic elements, +http://edamontology.org/data_1303,Nucleic acid features (quadruplexes), +http://edamontology.org/data_1306,Nucleosome exclusion sequences, +http://edamontology.org/data_1309,Gene features (exonic splicing enhancer), +http://edamontology.org/data_1310,Nucleic acid features (microRNA), +http://edamontology.org/data_1313,Coding region, +http://edamontology.org/data_1314,Gene features (SECIS element), +http://edamontology.org/data_1315,Transcription factor binding sites, +http://edamontology.org/data_1321,Protein features (sites), +http://edamontology.org/data_1322,Protein features report (signal peptides), +http://edamontology.org/data_1323,Protein features report (cleavage sites), +http://edamontology.org/data_1324,Protein features (post-translation modifications), +http://edamontology.org/data_1325,Protein features report (active sites), +http://edamontology.org/data_1326,Protein features report (binding sites), +http://edamontology.org/data_1327,Protein features (epitopes), +http://edamontology.org/data_1328,Protein features report (nucleic acid binding sites), +http://edamontology.org/data_1329,MHC Class I epitopes report, +http://edamontology.org/data_1330,MHC Class II epitopes report, +http://edamontology.org/data_1331,Protein features (PEST sites), +http://edamontology.org/data_1338,Sequence database hits scores list, +http://edamontology.org/data_1339,Sequence database hits alignments list, +http://edamontology.org/data_1340,Sequence database hits evaluation data, +http://edamontology.org/data_1344,MEME motif alphabet, +http://edamontology.org/data_1345,MEME background frequencies file, +http://edamontology.org/data_1346,MEME motifs directive file, +http://edamontology.org/data_1347,Dirichlet distribution, +http://edamontology.org/data_1348,HMM emission and transition counts, +http://edamontology.org/data_1352,Regular expression, +http://edamontology.org/data_1353,Sequence motif, +http://edamontology.org/data_1354,Sequence profile, +http://edamontology.org/data_1355,Protein signature, +http://edamontology.org/data_1358,Prosite nucleotide pattern, +http://edamontology.org/data_1359,Prosite protein pattern, +http://edamontology.org/data_1361,Position frequency matrix, +http://edamontology.org/data_1362,Position weight matrix, +http://edamontology.org/data_1363,Information content matrix, +http://edamontology.org/data_1364,Hidden Markov model, +http://edamontology.org/data_1365,Fingerprint, +http://edamontology.org/data_1368,Domainatrix signature, +http://edamontology.org/data_1371,HMMER NULL hidden Markov model, +http://edamontology.org/data_1372,Protein family signature, +http://edamontology.org/data_1373,Protein domain signature, +http://edamontology.org/data_1374,Protein region signature, +http://edamontology.org/data_1375,Protein repeat signature, +http://edamontology.org/data_1376,Protein site signature, +http://edamontology.org/data_1377,Protein conserved site signature, +http://edamontology.org/data_1378,Protein active site signature, +http://edamontology.org/data_1379,Protein binding site signature, +http://edamontology.org/data_1380,Protein post-translational modification signature, +http://edamontology.org/data_1381,Pair sequence alignment, +http://edamontology.org/data_1382,Sequence alignment (multiple), +http://edamontology.org/data_1383,Nucleic acid sequence alignment, +http://edamontology.org/data_1384,Protein sequence alignment, +http://edamontology.org/data_1385,Hybrid sequence alignment, +http://edamontology.org/data_1386,Sequence alignment (nucleic acid pair), +http://edamontology.org/data_1387,Sequence alignment (protein pair), +http://edamontology.org/data_1388,Hybrid sequence alignment (pair), +http://edamontology.org/data_1389,Multiple nucleotide sequence alignment, +http://edamontology.org/data_1390,Multiple protein sequence alignment, +http://edamontology.org/data_1394,Alignment score or penalty, +http://edamontology.org/data_1395,Score end gaps control, +http://edamontology.org/data_1396,Aligned sequence order, +http://edamontology.org/data_1397,Gap opening penalty, +http://edamontology.org/data_1398,Gap extension penalty, +http://edamontology.org/data_1399,Gap separation penalty, +http://edamontology.org/data_1400,Terminal gap penalty, +http://edamontology.org/data_1401,Match reward score, +http://edamontology.org/data_1402,Mismatch penalty score, +http://edamontology.org/data_1403,Drop off score, +http://edamontology.org/data_1404,Gap opening penalty (integer), +http://edamontology.org/data_1405,Gap opening penalty (float), +http://edamontology.org/data_1406,Gap extension penalty (integer), +http://edamontology.org/data_1407,Gap extension penalty (float), +http://edamontology.org/data_1408,Gap separation penalty (integer), +http://edamontology.org/data_1409,Gap separation penalty (float), +http://edamontology.org/data_1410,Terminal gap opening penalty, +http://edamontology.org/data_1411,Terminal gap extension penalty, +http://edamontology.org/data_1412,Sequence identity, +http://edamontology.org/data_1413,Sequence similarity, +http://edamontology.org/data_1414,Sequence alignment metadata (quality report), +http://edamontology.org/data_1415,Sequence alignment report (site conservation), +http://edamontology.org/data_1416,Sequence alignment report (site correlation), +http://edamontology.org/data_1417,Sequence-profile alignment (Domainatrix signature), +http://edamontology.org/data_1418,Sequence-profile alignment (HMM), +http://edamontology.org/data_1420,Sequence-profile alignment (fingerprint), +http://edamontology.org/data_1426,Phylogenetic continuous quantitative data, +http://edamontology.org/data_1427,Phylogenetic discrete data, +http://edamontology.org/data_1428,Phylogenetic character cliques, +http://edamontology.org/data_1429,Phylogenetic invariants, +http://edamontology.org/data_1438,Phylogenetic report, +http://edamontology.org/data_1439,DNA substitution model, +http://edamontology.org/data_1440,Phylogenetic tree report (tree shape), +http://edamontology.org/data_1441,Phylogenetic tree report (tree evaluation), +http://edamontology.org/data_1442,Phylogenetic tree distances, +http://edamontology.org/data_1443,Phylogenetic tree report (tree stratigraphic), +http://edamontology.org/data_1444,Phylogenetic character contrasts, +http://edamontology.org/data_1446,Comparison matrix (integers), +http://edamontology.org/data_1447,Comparison matrix (floats), +http://edamontology.org/data_1448,Comparison matrix (nucleotide), +http://edamontology.org/data_1449,Comparison matrix (amino acid), +http://edamontology.org/data_1450,Nucleotide comparison matrix (integers), +http://edamontology.org/data_1451,Nucleotide comparison matrix (floats), +http://edamontology.org/data_1452,Amino acid comparison matrix (integers), +http://edamontology.org/data_1453,Amino acid comparison matrix (floats), +http://edamontology.org/data_1459,Nucleic acid structure, +http://edamontology.org/data_1460,Protein structure, +http://edamontology.org/data_1461,Protein-ligand complex, +http://edamontology.org/data_1462,Carbohydrate structure, +http://edamontology.org/data_1463,Small molecule structure, +http://edamontology.org/data_1464,DNA structure, +http://edamontology.org/data_1465,RNA structure, +http://edamontology.org/data_1466,tRNA structure, +http://edamontology.org/data_1467,Protein chain, +http://edamontology.org/data_1468,Protein domain, +http://edamontology.org/data_1469,Protein structure (all atoms), +http://edamontology.org/data_1470,C-alpha trace, +http://edamontology.org/data_1471,Protein chain (all atoms), +http://edamontology.org/data_1472,Protein chain (C-alpha atoms), +http://edamontology.org/data_1473,Protein domain (all atoms), +http://edamontology.org/data_1474,Protein domain (C-alpha atoms), +http://edamontology.org/data_1479,Structure alignment (pair), +http://edamontology.org/data_1480,Structure alignment (multiple), +http://edamontology.org/data_1481,Protein structure alignment, +http://edamontology.org/data_1482,Nucleic acid structure alignment, +http://edamontology.org/data_1483,Structure alignment (protein pair), +http://edamontology.org/data_1484,Multiple protein tertiary structure alignment, +http://edamontology.org/data_1485,Structure alignment (protein all atoms), +http://edamontology.org/data_1486,Structure alignment (protein C-alpha atoms), +http://edamontology.org/data_1487,Pairwise protein tertiary structure alignment (all atoms), +http://edamontology.org/data_1488,Pairwise protein tertiary structure alignment (C-alpha atoms), +http://edamontology.org/data_1489,Multiple protein tertiary structure alignment (all atoms), +http://edamontology.org/data_1490,Multiple protein tertiary structure alignment (C-alpha atoms), +http://edamontology.org/data_1491,Structure alignment (nucleic acid pair), +http://edamontology.org/data_1492,Multiple nucleic acid tertiary structure alignment, +http://edamontology.org/data_1493,RNA structure alignment, +http://edamontology.org/data_1494,Structural transformation matrix, +http://edamontology.org/data_1495,DaliLite hit table, +http://edamontology.org/data_1496,Molecular similarity score, +http://edamontology.org/data_1497,Root-mean-square deviation, +http://edamontology.org/data_1498,Tanimoto similarity score, +http://edamontology.org/data_1499,3D-1D scoring matrix, +http://edamontology.org/data_1501,Amino acid index, +http://edamontology.org/data_1502,Amino acid index (chemical classes), +http://edamontology.org/data_1503,Amino acid pair-wise contact potentials, +http://edamontology.org/data_1505,Amino acid index (molecular weight), +http://edamontology.org/data_1506,Amino acid index (hydropathy), +http://edamontology.org/data_1507,Amino acid index (White-Wimley data), +http://edamontology.org/data_1508,Amino acid index (van der Waals radii), +http://edamontology.org/data_1509,Enzyme report, +http://edamontology.org/data_1517,Restriction enzyme report, +http://edamontology.org/data_1519,Peptide molecular weights, +http://edamontology.org/data_1520,Peptide hydrophobic moment, +http://edamontology.org/data_1521,Protein aliphatic index, +http://edamontology.org/data_1522,Protein sequence hydropathy plot, +http://edamontology.org/data_1523,Protein charge plot, +http://edamontology.org/data_1524,Protein solubility, +http://edamontology.org/data_1525,Protein crystallizability, +http://edamontology.org/data_1526,Protein globularity, +http://edamontology.org/data_1527,Protein titration curve, +http://edamontology.org/data_1528,Protein isoelectric point, +http://edamontology.org/data_1529,Protein pKa value, +http://edamontology.org/data_1530,Protein hydrogen exchange rate, +http://edamontology.org/data_1531,Protein extinction coefficient, +http://edamontology.org/data_1532,Protein optical density, +http://edamontology.org/data_1533,Protein subcellular localisation, +http://edamontology.org/data_1534,Peptide immunogenicity data, +http://edamontology.org/data_1536,MHC peptide immunogenicity report, +http://edamontology.org/data_1537,Protein structure report, +http://edamontology.org/data_1539,Protein structural quality report, +http://edamontology.org/data_1540,Protein non-covalent interactions report, +http://edamontology.org/data_1541,Protein flexibility or motion report, +http://edamontology.org/data_1542,Protein solvent accessibility, +http://edamontology.org/data_1543,Protein surface report, +http://edamontology.org/data_1544,Ramachandran plot, +http://edamontology.org/data_1545,Protein dipole moment, +http://edamontology.org/data_1546,Protein distance matrix, +http://edamontology.org/data_1547,Protein contact map, +http://edamontology.org/data_1548,Protein residue 3D cluster, +http://edamontology.org/data_1549,Protein hydrogen bonds, +http://edamontology.org/data_1550,Protein non-canonical interactions, +http://edamontology.org/data_1553,CATH node, +http://edamontology.org/data_1554,SCOP node, +http://edamontology.org/data_1555,EMBASSY domain classification, +http://edamontology.org/data_1556,CATH class, +http://edamontology.org/data_1557,CATH architecture, +http://edamontology.org/data_1558,CATH topology, +http://edamontology.org/data_1559,CATH homologous superfamily, +http://edamontology.org/data_1560,CATH structurally similar group, +http://edamontology.org/data_1561,CATH functional category, +http://edamontology.org/data_1564,Protein fold recognition report, +http://edamontology.org/data_1565,Protein-protein interaction report, +http://edamontology.org/data_1566,Protein-ligand interaction report, +http://edamontology.org/data_1567,Protein-nucleic acid interactions report, +http://edamontology.org/data_1583,Nucleic acid melting profile, +http://edamontology.org/data_1584,Nucleic acid enthalpy, +http://edamontology.org/data_1585,Nucleic acid entropy, +http://edamontology.org/data_1586,Nucleic acid melting temperature, +http://edamontology.org/data_1587,Nucleic acid stitch profile, +http://edamontology.org/data_1588,DNA base pair stacking energies data, +http://edamontology.org/data_1589,DNA base pair twist angle data, +http://edamontology.org/data_1590,DNA base trimer roll angles data, +http://edamontology.org/data_1591,Vienna RNA parameters, +http://edamontology.org/data_1592,Vienna RNA structure constraints, +http://edamontology.org/data_1593,Vienna RNA concentration data, +http://edamontology.org/data_1594,Vienna RNA calculated energy, +http://edamontology.org/data_1595,Base pairing probability matrix dotplot, +http://edamontology.org/data_1596,Nucleic acid folding report, +http://edamontology.org/data_1597,Codon usage table, +http://edamontology.org/data_1598,Genetic code, +http://edamontology.org/data_1599,Codon adaptation index, +http://edamontology.org/data_1600,Codon usage bias plot, +http://edamontology.org/data_1601,Nc statistic, +http://edamontology.org/data_1602,Codon usage fraction difference, +http://edamontology.org/data_1621,Pharmacogenomic test report, +http://edamontology.org/data_1622,Disease report, +http://edamontology.org/data_1634,Linkage disequilibrium (report), +http://edamontology.org/data_1636,Heat map, +http://edamontology.org/data_1642,Affymetrix probe sets library file, +http://edamontology.org/data_1643,Affymetrix probe sets information library file, +http://edamontology.org/data_1646,Molecular weights standard fingerprint, +http://edamontology.org/data_1656,Metabolic pathway report, +http://edamontology.org/data_1657,Genetic information processing pathway report, +http://edamontology.org/data_1658,Environmental information processing pathway report, +http://edamontology.org/data_1659,Signal transduction pathway report, +http://edamontology.org/data_1660,Cellular process pathways report, +http://edamontology.org/data_1661,Disease pathway or network report, +http://edamontology.org/data_1662,Drug structure relationship map, +http://edamontology.org/data_1663,Protein interaction networks, +http://edamontology.org/data_1664,MIRIAM datatype, +http://edamontology.org/data_1667,E-value, +http://edamontology.org/data_1668,Z-value, +http://edamontology.org/data_1669,P-value, +http://edamontology.org/data_1670,Database version information, +http://edamontology.org/data_1671,Tool version information, +http://edamontology.org/data_1672,CATH version information, +http://edamontology.org/data_1673,Swiss-Prot to PDB mapping, +http://edamontology.org/data_1674,Sequence database cross-references, +http://edamontology.org/data_1675,Job status, +http://edamontology.org/data_1676,Job ID, +http://edamontology.org/data_1677,Job type, +http://edamontology.org/data_1678,Tool log, +http://edamontology.org/data_1679,DaliLite log file, +http://edamontology.org/data_1680,STRIDE log file, +http://edamontology.org/data_1681,NACCESS log file, +http://edamontology.org/data_1682,EMBOSS wordfinder log file, +http://edamontology.org/data_1683,EMBOSS domainatrix log file, +http://edamontology.org/data_1684,EMBOSS sites log file, +http://edamontology.org/data_1685,EMBOSS supermatcher error file, +http://edamontology.org/data_1686,EMBOSS megamerger log file, +http://edamontology.org/data_1687,EMBOSS whichdb log file, +http://edamontology.org/data_1688,EMBOSS vectorstrip log file, +http://edamontology.org/data_1689,Username, +http://edamontology.org/data_1690,Password, +http://edamontology.org/data_1691,Email address, +http://edamontology.org/data_1692,Person name, +http://edamontology.org/data_1693,Number of iterations, +http://edamontology.org/data_1694,Number of output entities, +http://edamontology.org/data_1695,Hit sort order, +http://edamontology.org/data_1696,Drug report, +http://edamontology.org/data_1707,Phylogenetic tree image, +http://edamontology.org/data_1708,RNA secondary structure image, +http://edamontology.org/data_1709,Protein secondary structure image, +http://edamontology.org/data_1710,Structure image, +http://edamontology.org/data_1711,Sequence alignment image, +http://edamontology.org/data_1712,Chemical structure image, +http://edamontology.org/data_1713,Fate map, +http://edamontology.org/data_1714,Microarray spots image, +http://edamontology.org/data_1715,BioPax term, +http://edamontology.org/data_1716,GO, +http://edamontology.org/data_1717,MeSH, +http://edamontology.org/data_1718,HGNC, +http://edamontology.org/data_1719,NCBI taxonomy vocabulary, +http://edamontology.org/data_1720,Plant ontology term, +http://edamontology.org/data_1721,UMLS, +http://edamontology.org/data_1722,FMA, +http://edamontology.org/data_1723,EMAP, +http://edamontology.org/data_1724,ChEBI, +http://edamontology.org/data_1725,MGED, +http://edamontology.org/data_1726,myGrid, +http://edamontology.org/data_1727,GO (biological process), +http://edamontology.org/data_1728,GO (molecular function), +http://edamontology.org/data_1729,GO (cellular component), +http://edamontology.org/data_1730,Ontology relation type, +http://edamontology.org/data_1731,Ontology concept definition, +http://edamontology.org/data_1732,Ontology concept comment, +http://edamontology.org/data_1733,Ontology concept reference, +http://edamontology.org/data_1738,doc2loc document information, +http://edamontology.org/data_1742,PDB residue number, +http://edamontology.org/data_1743,Atomic coordinate, +http://edamontology.org/data_1744,Atomic x coordinate, +http://edamontology.org/data_1745,Atomic y coordinate, +http://edamontology.org/data_1746,Atomic z coordinate, +http://edamontology.org/data_1748,PDB atom name, +http://edamontology.org/data_1755,Protein atom, +http://edamontology.org/data_1756,Protein residue, +http://edamontology.org/data_1757,Atom name, +http://edamontology.org/data_1758,PDB residue name, +http://edamontology.org/data_1759,PDB model number, +http://edamontology.org/data_1762,CATH domain report, +http://edamontology.org/data_1764,CATH representative domain sequences (ATOM), +http://edamontology.org/data_1765,CATH representative domain sequences (COMBS), +http://edamontology.org/data_1766,CATH domain sequences (ATOM), +http://edamontology.org/data_1767,CATH domain sequences (COMBS), +http://edamontology.org/data_1771,Sequence version, +http://edamontology.org/data_1772,Score, +http://edamontology.org/data_1776,Protein report (function), +http://edamontology.org/data_1783,Gene name (ASPGD), +http://edamontology.org/data_1784,Gene name (CGD), +http://edamontology.org/data_1785,Gene name (dictyBase), +http://edamontology.org/data_1786,Gene name (EcoGene primary), +http://edamontology.org/data_1787,Gene name (MaizeGDB), +http://edamontology.org/data_1788,Gene name (SGD), +http://edamontology.org/data_1789,Gene name (TGD), +http://edamontology.org/data_1790,Gene name (CGSC), +http://edamontology.org/data_1791,Gene name (HGNC), +http://edamontology.org/data_1792,Gene name (MGD), +http://edamontology.org/data_1793,Gene name (Bacillus subtilis), +http://edamontology.org/data_1794,Gene ID (PlasmoDB), +http://edamontology.org/data_1795,Gene ID (EcoGene), +http://edamontology.org/data_1796,Gene ID (FlyBase), +http://edamontology.org/data_1797,Gene ID (GeneDB Glossina morsitans), +http://edamontology.org/data_1798,Gene ID (GeneDB Leishmania major), +http://edamontology.org/data_1799,Gene ID (GeneDB Plasmodium falciparum), +http://edamontology.org/data_1800,Gene ID (GeneDB Schizosaccharomyces pombe), +http://edamontology.org/data_1801,Gene ID (GeneDB Trypanosoma brucei), +http://edamontology.org/data_1802,Gene ID (Gramene), +http://edamontology.org/data_1803,Gene ID (Virginia microbial), +http://edamontology.org/data_1804,Gene ID (SGN), +http://edamontology.org/data_1805,Gene ID (WormBase), +http://edamontology.org/data_1806,Gene synonym, +http://edamontology.org/data_1807,ORF name, +http://edamontology.org/data_1852,Sequence assembly component, +http://edamontology.org/data_1853,Chromosome annotation (aberration), +http://edamontology.org/data_1855,Clone ID, +http://edamontology.org/data_1856,PDB insertion code, +http://edamontology.org/data_1857,Atomic occupancy, +http://edamontology.org/data_1858,Isotropic B factor, +http://edamontology.org/data_1859,Deletion map, +http://edamontology.org/data_1860,QTL map, +http://edamontology.org/data_1863,Haplotype map, +http://edamontology.org/data_1864,Map set data, +http://edamontology.org/data_1865,Map feature, +http://edamontology.org/data_1866,Map type, +http://edamontology.org/data_1867,Protein fold name, +http://edamontology.org/data_1868,Taxon, +http://edamontology.org/data_1869,Organism identifier, +http://edamontology.org/data_1870,Genus name, +http://edamontology.org/data_1872,Taxonomic classification, +http://edamontology.org/data_1873,iHOP organism ID, +http://edamontology.org/data_1874,Genbank common name, +http://edamontology.org/data_1875,NCBI taxon, +http://edamontology.org/data_1877,Synonym, +http://edamontology.org/data_1878,Misspelling, +http://edamontology.org/data_1879,Acronym, +http://edamontology.org/data_1880,Misnomer, +http://edamontology.org/data_1881,Author ID, +http://edamontology.org/data_1882,DragonDB author identifier, +http://edamontology.org/data_1883,Annotated URI, +http://edamontology.org/data_1884,UniProt keywords, +http://edamontology.org/data_1885,Gene ID (GeneFarm), +http://edamontology.org/data_1886,Blattner number, +http://edamontology.org/data_1887,Gene ID (MIPS Maize), +http://edamontology.org/data_1888,Gene ID (MIPS Medicago), +http://edamontology.org/data_1889,Gene name (DragonDB), +http://edamontology.org/data_1890,Gene name (Arabidopsis), +http://edamontology.org/data_1891,iHOP symbol, +http://edamontology.org/data_1892,Gene name (GeneFarm), +http://edamontology.org/data_1893,Locus ID, +http://edamontology.org/data_1895,Locus ID (AGI), +http://edamontology.org/data_1896,Locus ID (ASPGD), +http://edamontology.org/data_1897,Locus ID (MGG), +http://edamontology.org/data_1898,Locus ID (CGD), +http://edamontology.org/data_1899,Locus ID (CMR), +http://edamontology.org/data_1900,NCBI locus tag, +http://edamontology.org/data_1901,Locus ID (SGD), +http://edamontology.org/data_1902,Locus ID (MMP), +http://edamontology.org/data_1903,Locus ID (DictyBase), +http://edamontology.org/data_1904,Locus ID (EntrezGene), +http://edamontology.org/data_1905,Locus ID (MaizeGDB), +http://edamontology.org/data_1906,Quantitative trait locus, +http://edamontology.org/data_1907,Gene ID (KOME), +http://edamontology.org/data_1908,Locus ID (Tropgene), +http://edamontology.org/data_1916,Alignment, +http://edamontology.org/data_1917,Atomic property, +http://edamontology.org/data_2007,UniProt keyword, +http://edamontology.org/data_2009,Ordered locus name, +http://edamontology.org/data_2012,Sequence coordinates, +http://edamontology.org/data_2016,Amino acid property, +http://edamontology.org/data_2018,Annotation, +http://edamontology.org/data_2019,Map data, +http://edamontology.org/data_2022,Vienna RNA structural data, +http://edamontology.org/data_2023,Sequence mask parameter, +http://edamontology.org/data_2024,Enzyme kinetics data, +http://edamontology.org/data_2025,Michaelis Menten plot, +http://edamontology.org/data_2026,Hanes Woolf plot, +http://edamontology.org/data_2028,Experimental data, +http://edamontology.org/data_2041,Genome version information, +http://edamontology.org/data_2042,Evidence, +http://edamontology.org/data_2043,Sequence record lite, +http://edamontology.org/data_2044,Sequence, +http://edamontology.org/data_2046,Nucleic acid sequence record (lite), +http://edamontology.org/data_2047,Protein sequence record (lite), +http://edamontology.org/data_2048,Report, +http://edamontology.org/data_2050,Molecular property (general), +http://edamontology.org/data_2053,Structural data, +http://edamontology.org/data_2070,Sequence motif (nucleic acid), +http://edamontology.org/data_2071,Sequence motif (protein), +http://edamontology.org/data_2079,Search parameter, +http://edamontology.org/data_2080,Database search results, +http://edamontology.org/data_2081,Secondary structure, +http://edamontology.org/data_2082,Matrix, +http://edamontology.org/data_2083,Alignment data, +http://edamontology.org/data_2084,Nucleic acid report, +http://edamontology.org/data_2085,Structure report, +http://edamontology.org/data_2086,Nucleic acid structure data, +http://edamontology.org/data_2087,Molecular property, +http://edamontology.org/data_2088,DNA base structural data, +http://edamontology.org/data_2090,Database entry version information, +http://edamontology.org/data_2091,Accession, +http://edamontology.org/data_2092,SNP, +http://edamontology.org/data_2093,Data reference, +http://edamontology.org/data_2098,Job identifier, +http://edamontology.org/data_2099,Name, +http://edamontology.org/data_2100,Type, +http://edamontology.org/data_2101,User ID, +http://edamontology.org/data_2102,KEGG organism code, +http://edamontology.org/data_2103,Gene name (KEGG GENES), +http://edamontology.org/data_2104,BioCyc ID, +http://edamontology.org/data_2105,Compound ID (BioCyc), +http://edamontology.org/data_2106,Reaction ID (BioCyc), +http://edamontology.org/data_2107,Enzyme ID (BioCyc), +http://edamontology.org/data_2108,Reaction ID, +http://edamontology.org/data_2109,Identifier (hybrid), +http://edamontology.org/data_2110,Molecular property identifier, +http://edamontology.org/data_2111,Codon usage table ID, +http://edamontology.org/data_2112,FlyBase primary identifier, +http://edamontology.org/data_2113,WormBase identifier, +http://edamontology.org/data_2114,WormBase wormpep ID, +http://edamontology.org/data_2116,Nucleic acid features (codon), +http://edamontology.org/data_2117,Map identifier, +http://edamontology.org/data_2118,Person identifier, +http://edamontology.org/data_2119,Nucleic acid identifier, +http://edamontology.org/data_2126,Translation frame specification, +http://edamontology.org/data_2127,Genetic code identifier, +http://edamontology.org/data_2128,Genetic code name, +http://edamontology.org/data_2129,File format name, +http://edamontology.org/data_2130,Sequence profile type, +http://edamontology.org/data_2131,Operating system name, +http://edamontology.org/data_2132,Mutation type, +http://edamontology.org/data_2133,Logical operator, +http://edamontology.org/data_2134,Results sort order, +http://edamontology.org/data_2135,Toggle, +http://edamontology.org/data_2136,Sequence width, +http://edamontology.org/data_2137,Gap penalty, +http://edamontology.org/data_2139,Nucleic acid melting temperature, +http://edamontology.org/data_2140,Concentration, +http://edamontology.org/data_2141,Window step size, +http://edamontology.org/data_2142,EMBOSS graph, +http://edamontology.org/data_2143,EMBOSS report, +http://edamontology.org/data_2145,Sequence offset, +http://edamontology.org/data_2146,Threshold, +http://edamontology.org/data_2147,Protein report (transcription factor), +http://edamontology.org/data_2149,Database category name, +http://edamontology.org/data_2150,Sequence profile name, +http://edamontology.org/data_2151,Color, +http://edamontology.org/data_2152,Rendering parameter, +http://edamontology.org/data_2154,Sequence name, +http://edamontology.org/data_2156,Date, +http://edamontology.org/data_2157,Word composition, +http://edamontology.org/data_2160,Fickett testcode plot, +http://edamontology.org/data_2161,Sequence similarity plot, +http://edamontology.org/data_2162,Helical wheel, +http://edamontology.org/data_2163,Helical net, +http://edamontology.org/data_2164,Protein sequence properties plot, +http://edamontology.org/data_2165,Protein ionisation curve, +http://edamontology.org/data_2166,Sequence composition plot, +http://edamontology.org/data_2167,Nucleic acid density plot, +http://edamontology.org/data_2168,Sequence trace image, +http://edamontology.org/data_2169,Nucleic acid features (siRNA), +http://edamontology.org/data_2173,Sequence set (stream), +http://edamontology.org/data_2174,FlyBase secondary identifier, +http://edamontology.org/data_2176,Cardinality, +http://edamontology.org/data_2177,Exactly 1, +http://edamontology.org/data_2178,1 or more, +http://edamontology.org/data_2179,Exactly 2, +http://edamontology.org/data_2180,2 or more, +http://edamontology.org/data_2190,Sequence checksum, +http://edamontology.org/data_2191,Protein features report (chemical modifications), +http://edamontology.org/data_2192,Error, +http://edamontology.org/data_2193,Database entry metadata, +http://edamontology.org/data_2198,Gene cluster, +http://edamontology.org/data_2201,Sequence record full, +http://edamontology.org/data_2208,Plasmid identifier, +http://edamontology.org/data_2209,Mutation ID, +http://edamontology.org/data_2212,Mutation annotation (basic), +http://edamontology.org/data_2213,Mutation annotation (prevalence), +http://edamontology.org/data_2214,Mutation annotation (prognostic), +http://edamontology.org/data_2215,Mutation annotation (functional), +http://edamontology.org/data_2216,Codon number, +http://edamontology.org/data_2217,Tumor annotation, +http://edamontology.org/data_2218,Server metadata, +http://edamontology.org/data_2219,Database field name, +http://edamontology.org/data_2220,Sequence cluster ID (SYSTERS), +http://edamontology.org/data_2223,Ontology metadata, +http://edamontology.org/data_2235,Raw SCOP domain classification, +http://edamontology.org/data_2236,Raw CATH domain classification, +http://edamontology.org/data_2240,Heterogen annotation, +http://edamontology.org/data_2242,Phylogenetic property values, +http://edamontology.org/data_2245,Sequence set (bootstrapped), +http://edamontology.org/data_2247,Phylogenetic consensus tree, +http://edamontology.org/data_2248,Schema, +http://edamontology.org/data_2249,DTD, +http://edamontology.org/data_2250,XML Schema, +http://edamontology.org/data_2251,Relax-NG schema, +http://edamontology.org/data_2252,XSLT stylesheet, +http://edamontology.org/data_2253,Data resource definition name, +http://edamontology.org/data_2254,OBO file format name, +http://edamontology.org/data_2285,Gene ID (MIPS), +http://edamontology.org/data_2288,Sequence identifier (protein), +http://edamontology.org/data_2289,Sequence identifier (nucleic acid), +http://edamontology.org/data_2290,EMBL accession, +http://edamontology.org/data_2291,UniProt ID, +http://edamontology.org/data_2292,GenBank accession, +http://edamontology.org/data_2293,Gramene secondary identifier, +http://edamontology.org/data_2294,Sequence variation ID, +http://edamontology.org/data_2295,Gene ID, +http://edamontology.org/data_2296,Gene name (AceView), +http://edamontology.org/data_2297,Gene ID (ECK), +http://edamontology.org/data_2298,Gene ID (HGNC), +http://edamontology.org/data_2299,Gene name, +http://edamontology.org/data_2300,Gene name (NCBI), +http://edamontology.org/data_2301,SMILES string, +http://edamontology.org/data_2302,STRING ID, +http://edamontology.org/data_2307,Virus annotation, +http://edamontology.org/data_2308,Virus annotation (taxonomy), +http://edamontology.org/data_2309,Reaction ID (SABIO-RK), +http://edamontology.org/data_2313,Carbohydrate report, +http://edamontology.org/data_2314,GI number, +http://edamontology.org/data_2315,NCBI version, +http://edamontology.org/data_2316,Cell line name, +http://edamontology.org/data_2317,Cell line name (exact), +http://edamontology.org/data_2318,Cell line name (truncated), +http://edamontology.org/data_2319,Cell line name (no punctuation), +http://edamontology.org/data_2320,Cell line name (assonant), +http://edamontology.org/data_2321,Enzyme ID, +http://edamontology.org/data_2325,REBASE enzyme number, +http://edamontology.org/data_2326,DrugBank ID, +http://edamontology.org/data_2327,GI number (protein), +http://edamontology.org/data_2335,Bit score, +http://edamontology.org/data_2336,Translation phase specification, +http://edamontology.org/data_2337,Resource metadata, +http://edamontology.org/data_2338,Ontology identifier, +http://edamontology.org/data_2339,Ontology concept name, +http://edamontology.org/data_2340,Genome build identifier, +http://edamontology.org/data_2342,Pathway or network name, +http://edamontology.org/data_2343,Pathway ID (KEGG), +http://edamontology.org/data_2344,Pathway ID (NCI-Nature), +http://edamontology.org/data_2345,Pathway ID (ConsensusPathDB), +http://edamontology.org/data_2346,Sequence cluster ID (UniRef), +http://edamontology.org/data_2347,Sequence cluster ID (UniRef100), +http://edamontology.org/data_2348,Sequence cluster ID (UniRef90), +http://edamontology.org/data_2349,Sequence cluster ID (UniRef50), +http://edamontology.org/data_2353,Ontology data, +http://edamontology.org/data_2354,RNA family report, +http://edamontology.org/data_2355,RNA family identifier, +http://edamontology.org/data_2356,RFAM accession, +http://edamontology.org/data_2357,Protein signature type, +http://edamontology.org/data_2358,Domain-nucleic acid interaction report, +http://edamontology.org/data_2359,Domain-domain interactions, +http://edamontology.org/data_2360,Domain-domain interaction (indirect), +http://edamontology.org/data_2362,Sequence accession (hybrid), +http://edamontology.org/data_2363,2D PAGE data, +http://edamontology.org/data_2364,2D PAGE report, +http://edamontology.org/data_2365,Pathway or network accession, +http://edamontology.org/data_2366,Secondary structure alignment, +http://edamontology.org/data_2367,ASTD ID, +http://edamontology.org/data_2368,ASTD ID (exon), +http://edamontology.org/data_2369,ASTD ID (intron), +http://edamontology.org/data_2370,ASTD ID (polya), +http://edamontology.org/data_2371,ASTD ID (tss), +http://edamontology.org/data_2372,2D PAGE spot report, +http://edamontology.org/data_2373,Spot ID, +http://edamontology.org/data_2374,Spot serial number, +http://edamontology.org/data_2375,Spot ID (HSC-2DPAGE), +http://edamontology.org/data_2378,Protein-motif interaction, +http://edamontology.org/data_2379,Strain identifier, +http://edamontology.org/data_2380,CABRI accession, +http://edamontology.org/data_2381,Experiment report (genotyping), +http://edamontology.org/data_2382,Genotype experiment ID, +http://edamontology.org/data_2383,EGA accession, +http://edamontology.org/data_2384,IPI protein ID, +http://edamontology.org/data_2385,RefSeq accession (protein), +http://edamontology.org/data_2386,EPD ID, +http://edamontology.org/data_2387,TAIR accession, +http://edamontology.org/data_2388,TAIR accession (At gene), +http://edamontology.org/data_2389,UniSTS accession, +http://edamontology.org/data_2390,UNITE accession, +http://edamontology.org/data_2391,UTR accession, +http://edamontology.org/data_2392,UniParc accession, +http://edamontology.org/data_2393,mFLJ/mKIAA number, +http://edamontology.org/data_2395,Fungi annotation, +http://edamontology.org/data_2396,Fungi annotation (anamorph), +http://edamontology.org/data_2398,Ensembl protein ID, +http://edamontology.org/data_2400,Toxin annotation, +http://edamontology.org/data_2401,Protein report (membrane protein), +http://edamontology.org/data_2402,Protein-drug interaction report, +http://edamontology.org/data_2522,Map data, +http://edamontology.org/data_2523,Phylogenetic data, +http://edamontology.org/data_2524,Protein data, +http://edamontology.org/data_2525,Nucleic acid data, +http://edamontology.org/data_2526,Text data, +http://edamontology.org/data_2527,Parameter, +http://edamontology.org/data_2528,Molecular data, +http://edamontology.org/data_2529,Molecule report, +http://edamontology.org/data_2530,Organism report, +http://edamontology.org/data_2531,Protocol, +http://edamontology.org/data_2534,Sequence attribute, +http://edamontology.org/data_2535,Sequence tag profile, +http://edamontology.org/data_2536,Mass spectrometry data, +http://edamontology.org/data_2537,Protein structure raw data, +http://edamontology.org/data_2538,Mutation identifier, +http://edamontology.org/data_2539,Alignment data, +http://edamontology.org/data_2540,Data index data, +http://edamontology.org/data_2563,Amino acid name (single letter), +http://edamontology.org/data_2564,Amino acid name (three letter), +http://edamontology.org/data_2565,Amino acid name (full name), +http://edamontology.org/data_2576,Toxin identifier, +http://edamontology.org/data_2578,ArachnoServer ID, +http://edamontology.org/data_2579,Expressed gene list, +http://edamontology.org/data_2580,BindingDB Monomer ID, +http://edamontology.org/data_2581,GO concept name, +http://edamontology.org/data_2582,GO concept ID (biological process), +http://edamontology.org/data_2583,GO concept ID (molecular function), +http://edamontology.org/data_2584,GO concept name (cellular component), +http://edamontology.org/data_2586,Northern blot image, +http://edamontology.org/data_2587,Blot ID, +http://edamontology.org/data_2588,BlotBase blot ID, +http://edamontology.org/data_2589,Hierarchy, +http://edamontology.org/data_2590,Hierarchy identifier, +http://edamontology.org/data_2591,Brite hierarchy ID, +http://edamontology.org/data_2592,Cancer type, +http://edamontology.org/data_2593,BRENDA organism ID, +http://edamontology.org/data_2594,UniGene taxon, +http://edamontology.org/data_2595,UTRdb taxon, +http://edamontology.org/data_2596,Catalogue ID, +http://edamontology.org/data_2597,CABRI catalogue name, +http://edamontology.org/data_2598,Secondary structure alignment metadata, +http://edamontology.org/data_2599,Molecule interaction report, +http://edamontology.org/data_2600,Pathway or network, +http://edamontology.org/data_2601,Small molecule data, +http://edamontology.org/data_2602,Genotype and phenotype data, +http://edamontology.org/data_2603,Expression data, +http://edamontology.org/data_2605,Compound ID (KEGG), +http://edamontology.org/data_2606,RFAM name, +http://edamontology.org/data_2608,Reaction ID (KEGG), +http://edamontology.org/data_2609,Drug ID (KEGG), +http://edamontology.org/data_2610,Ensembl ID, +http://edamontology.org/data_2611,ICD identifier, +http://edamontology.org/data_2612,Sequence cluster ID (CluSTr), +http://edamontology.org/data_2613,KEGG Glycan ID, +http://edamontology.org/data_2614,TCDB ID, +http://edamontology.org/data_2615,MINT ID, +http://edamontology.org/data_2616,DIP ID, +http://edamontology.org/data_2617,Signaling Gateway protein ID, +http://edamontology.org/data_2618,Protein modification ID, +http://edamontology.org/data_2619,RESID ID, +http://edamontology.org/data_2620,RGD ID, +http://edamontology.org/data_2621,TAIR accession (protein), +http://edamontology.org/data_2622,Compound ID (HMDB), +http://edamontology.org/data_2625,LIPID MAPS ID, +http://edamontology.org/data_2626,PeptideAtlas ID, +http://edamontology.org/data_2627,Molecular interaction ID, +http://edamontology.org/data_2628,BioGRID interaction ID, +http://edamontology.org/data_2629,Enzyme ID (MEROPS), +http://edamontology.org/data_2630,Mobile genetic element ID, +http://edamontology.org/data_2631,ACLAME ID, +http://edamontology.org/data_2632,SGD ID, +http://edamontology.org/data_2633,Book ID, +http://edamontology.org/data_2634,ISBN, +http://edamontology.org/data_2635,Compound ID (3DMET), +http://edamontology.org/data_2636,MatrixDB interaction ID, +http://edamontology.org/data_2637,cPath ID, +http://edamontology.org/data_2638,PubChem bioassay ID, +http://edamontology.org/data_2639,PubChem ID, +http://edamontology.org/data_2641,Reaction ID (MACie), +http://edamontology.org/data_2642,Gene ID (miRBase), +http://edamontology.org/data_2643,Gene ID (ZFIN), +http://edamontology.org/data_2644,Reaction ID (Rhea), +http://edamontology.org/data_2645,Pathway ID (Unipathway), +http://edamontology.org/data_2646,Compound ID (ChEMBL), +http://edamontology.org/data_2647,LGICdb identifier, +http://edamontology.org/data_2648,Reaction kinetics ID (SABIO-RK), +http://edamontology.org/data_2649,PharmGKB ID, +http://edamontology.org/data_2650,Pathway ID (PharmGKB), +http://edamontology.org/data_2651,Disease ID (PharmGKB), +http://edamontology.org/data_2652,Drug ID (PharmGKB), +http://edamontology.org/data_2653,Drug ID (TTD), +http://edamontology.org/data_2654,Target ID (TTD), +http://edamontology.org/data_2655,Cell type identifier, +http://edamontology.org/data_2656,NeuronDB ID, +http://edamontology.org/data_2657,NeuroMorpho ID, +http://edamontology.org/data_2658,Compound ID (ChemIDplus), +http://edamontology.org/data_2659,Pathway ID (SMPDB), +http://edamontology.org/data_2660,BioNumbers ID, +http://edamontology.org/data_2662,T3DB ID, +http://edamontology.org/data_2663,Carbohydrate identifier, +http://edamontology.org/data_2664,GlycomeDB ID, +http://edamontology.org/data_2665,LipidBank ID, +http://edamontology.org/data_2666,CDD ID, +http://edamontology.org/data_2667,MMDB ID, +http://edamontology.org/data_2668,iRefIndex ID, +http://edamontology.org/data_2669,ModelDB ID, +http://edamontology.org/data_2670,Pathway ID (DQCS), +http://edamontology.org/data_2671,Ensembl ID (Homo sapiens), +http://edamontology.org/data_2672,Ensembl ID ('Bos taurus'), +http://edamontology.org/data_2673,Ensembl ID ('Canis familiaris'), +http://edamontology.org/data_2674,Ensembl ID ('Cavia porcellus'), +http://edamontology.org/data_2675,Ensembl ID ('Ciona intestinalis'), +http://edamontology.org/data_2676,Ensembl ID ('Ciona savignyi'), +http://edamontology.org/data_2677,Ensembl ID ('Danio rerio'), +http://edamontology.org/data_2678,Ensembl ID ('Dasypus novemcinctus'), +http://edamontology.org/data_2679,Ensembl ID ('Echinops telfairi'), +http://edamontology.org/data_2680,Ensembl ID ('Erinaceus europaeus'), +http://edamontology.org/data_2681,Ensembl ID ('Felis catus'), +http://edamontology.org/data_2682,Ensembl ID ('Gallus gallus'), +http://edamontology.org/data_2683,Ensembl ID ('Gasterosteus aculeatus'), +http://edamontology.org/data_2684,Ensembl ID ('Homo sapiens'), +http://edamontology.org/data_2685,Ensembl ID ('Loxodonta africana'), +http://edamontology.org/data_2686,Ensembl ID ('Macaca mulatta'), +http://edamontology.org/data_2687,Ensembl ID ('Monodelphis domestica'), +http://edamontology.org/data_2688,Ensembl ID ('Mus musculus'), +http://edamontology.org/data_2689,Ensembl ID ('Myotis lucifugus'), +http://edamontology.org/data_2690,"Ensembl ID (""Ornithorhynchus anatinus\"")", +http://edamontology.org/data_2691,Ensembl ID ('Oryctolagus cuniculus'), +http://edamontology.org/data_2692,Ensembl ID ('Oryzias latipes'), +http://edamontology.org/data_2693,Ensembl ID ('Otolemur garnettii'), +http://edamontology.org/data_2694,Ensembl ID ('Pan troglodytes'), +http://edamontology.org/data_2695,Ensembl ID ('Rattus norvegicus'), +http://edamontology.org/data_2696,Ensembl ID ('Spermophilus tridecemlineatus'), +http://edamontology.org/data_2697,Ensembl ID ('Takifugu rubripes'), +http://edamontology.org/data_2698,Ensembl ID ('Tupaia belangeri'), +http://edamontology.org/data_2699,Ensembl ID ('Xenopus tropicalis'), +http://edamontology.org/data_2700,CATH identifier, +http://edamontology.org/data_2701,CATH node ID (family), +http://edamontology.org/data_2702,Enzyme ID (CAZy), +http://edamontology.org/data_2704,Clone ID (IMAGE), +http://edamontology.org/data_2705,GO concept ID (cellular component), +http://edamontology.org/data_2706,Chromosome name (BioCyc), +http://edamontology.org/data_2709,CleanEx entry name, +http://edamontology.org/data_2710,CleanEx dataset code, +http://edamontology.org/data_2711,Genome report, +http://edamontology.org/data_2713,Protein ID (CORUM), +http://edamontology.org/data_2714,CDD PSSM-ID, +http://edamontology.org/data_2715,Protein ID (CuticleDB), +http://edamontology.org/data_2716,DBD ID, +http://edamontology.org/data_2717,Oligonucleotide probe annotation, +http://edamontology.org/data_2718,Oligonucleotide ID, +http://edamontology.org/data_2719,dbProbe ID, +http://edamontology.org/data_2720,Dinucleotide property, +http://edamontology.org/data_2721,DiProDB ID, +http://edamontology.org/data_2722,Protein features report (disordered structure), +http://edamontology.org/data_2723,Protein ID (DisProt), +http://edamontology.org/data_2724,Embryo report, +http://edamontology.org/data_2725,Ensembl transcript ID, +http://edamontology.org/data_2726,Inhibitor annotation, +http://edamontology.org/data_2727,Promoter ID, +http://edamontology.org/data_2728,EST accession, +http://edamontology.org/data_2729,COGEME EST ID, +http://edamontology.org/data_2730,COGEME unisequence ID, +http://edamontology.org/data_2731,Protein family ID (GeneFarm), +http://edamontology.org/data_2732,Family name, +http://edamontology.org/data_2733,Genus name (virus), +http://edamontology.org/data_2734,Family name (virus), +http://edamontology.org/data_2735,Database name (SwissRegulon), +http://edamontology.org/data_2736,Sequence feature ID (SwissRegulon), +http://edamontology.org/data_2737,FIG ID, +http://edamontology.org/data_2738,Gene ID (Xenbase), +http://edamontology.org/data_2739,Gene ID (Genolist), +http://edamontology.org/data_2740,Gene name (Genolist), +http://edamontology.org/data_2741,ABS ID, +http://edamontology.org/data_2742,AraC-XylS ID, +http://edamontology.org/data_2743,Gene name (HUGO), +http://edamontology.org/data_2744,Locus ID (PseudoCAP), +http://edamontology.org/data_2745,Locus ID (UTR), +http://edamontology.org/data_2746,MonosaccharideDB ID, +http://edamontology.org/data_2747,Database name (CMD), +http://edamontology.org/data_2748,Database name (Osteogenesis), +http://edamontology.org/data_2749,Genome identifier, +http://edamontology.org/data_2751,GenomeReviews ID, +http://edamontology.org/data_2752,GlycoMap ID, +http://edamontology.org/data_2753,Carbohydrate conformational map, +http://edamontology.org/data_2755,Transcription factor name, +http://edamontology.org/data_2756,TCID, +http://edamontology.org/data_2757,Pfam domain name, +http://edamontology.org/data_2758,Pfam clan ID, +http://edamontology.org/data_2759,Gene ID (VectorBase), +http://edamontology.org/data_2761,UTRSite ID, +http://edamontology.org/data_2762,Sequence signature report, +http://edamontology.org/data_2763,Locus annotation, +http://edamontology.org/data_2764,Protein name (UniProt), +http://edamontology.org/data_2765,Term ID list, +http://edamontology.org/data_2766,HAMAP ID, +http://edamontology.org/data_2767,Identifier with metadata, +http://edamontology.org/data_2768,Gene symbol annotation, +http://edamontology.org/data_2769,Transcript ID, +http://edamontology.org/data_2770,HIT ID, +http://edamontology.org/data_2771,HIX ID, +http://edamontology.org/data_2772,HPA antibody id, +http://edamontology.org/data_2773,IMGT/HLA ID, +http://edamontology.org/data_2774,Gene ID (JCVI), +http://edamontology.org/data_2775,Kinase name, +http://edamontology.org/data_2776,ConsensusPathDB entity ID, +http://edamontology.org/data_2777,ConsensusPathDB entity name, +http://edamontology.org/data_2778,CCAP strain number, +http://edamontology.org/data_2779,Stock number, +http://edamontology.org/data_2780,Stock number (TAIR), +http://edamontology.org/data_2781,REDIdb ID, +http://edamontology.org/data_2782,SMART domain name, +http://edamontology.org/data_2783,Protein family ID (PANTHER), +http://edamontology.org/data_2784,RNAVirusDB ID, +http://edamontology.org/data_2785,Virus ID, +http://edamontology.org/data_2786,NCBI Genome Project ID, +http://edamontology.org/data_2787,NCBI genome accession, +http://edamontology.org/data_2788,Sequence profile data, +http://edamontology.org/data_2789,Protein ID (TopDB), +http://edamontology.org/data_2790,Gel ID, +http://edamontology.org/data_2791,Reference map name (SWISS-2DPAGE), +http://edamontology.org/data_2792,Protein ID (PeroxiBase), +http://edamontology.org/data_2793,SISYPHUS ID, +http://edamontology.org/data_2794,ORF ID, +http://edamontology.org/data_2795,ORF identifier, +http://edamontology.org/data_2796,Linucs ID, +http://edamontology.org/data_2797,Protein ID (LGICdb), +http://edamontology.org/data_2798,MaizeDB ID, +http://edamontology.org/data_2799,Gene ID (MfunGD), +http://edamontology.org/data_2800,Orpha number, +http://edamontology.org/data_2802,Protein ID (EcID), +http://edamontology.org/data_2803,Clone ID (RefSeq), +http://edamontology.org/data_2804,Protein ID (ConoServer), +http://edamontology.org/data_2805,GeneSNP ID, +http://edamontology.org/data_2812,Lipid identifier, +http://edamontology.org/data_2831,Databank, +http://edamontology.org/data_2832,Web portal, +http://edamontology.org/data_2835,Gene ID (VBASE2), +http://edamontology.org/data_2836,DPVweb ID, +http://edamontology.org/data_2837,Pathway ID (BioSystems), +http://edamontology.org/data_2838,Experimental data (proteomics), +http://edamontology.org/data_2849,Abstract, +http://edamontology.org/data_2850,Lipid structure, +http://edamontology.org/data_2851,Drug structure, +http://edamontology.org/data_2852,Toxin structure, +http://edamontology.org/data_2854,Position-specific scoring matrix, +http://edamontology.org/data_2855,Distance matrix, +http://edamontology.org/data_2856,Structural distance matrix, +http://edamontology.org/data_2857,Article metadata, +http://edamontology.org/data_2858,Ontology concept, +http://edamontology.org/data_2865,Codon usage bias, +http://edamontology.org/data_2866,Northern blot report, +http://edamontology.org/data_2870,Radiation hybrid map, +http://edamontology.org/data_2872,ID list, +http://edamontology.org/data_2873,Phylogenetic gene frequencies data, +http://edamontology.org/data_2874,Sequence set (polymorphic), +http://edamontology.org/data_2875,DRCAT resource, +http://edamontology.org/data_2877,Protein complex, +http://edamontology.org/data_2878,Protein structural motif, +http://edamontology.org/data_2879,Lipid report, +http://edamontology.org/data_2880,Secondary structure image, +http://edamontology.org/data_2881,Secondary structure report, +http://edamontology.org/data_2882,DNA features, +http://edamontology.org/data_2883,RNA features report, +http://edamontology.org/data_2884,Plot, +http://edamontology.org/data_2886,Protein sequence record, +http://edamontology.org/data_2887,Nucleic acid sequence record, +http://edamontology.org/data_2888,Protein sequence record (full), +http://edamontology.org/data_2889,Nucleic acid sequence record (full), +http://edamontology.org/data_2891,Biological model accession, +http://edamontology.org/data_2892,Cell type name, +http://edamontology.org/data_2893,Cell type accession, +http://edamontology.org/data_2894,Compound accession, +http://edamontology.org/data_2895,Drug accession, +http://edamontology.org/data_2896,Toxin name, +http://edamontology.org/data_2897,Toxin accession, +http://edamontology.org/data_2898,Monosaccharide accession, +http://edamontology.org/data_2899,Drug name, +http://edamontology.org/data_2900,Carbohydrate accession, +http://edamontology.org/data_2901,Molecule accession, +http://edamontology.org/data_2902,Data resource definition accession, +http://edamontology.org/data_2903,Genome accession, +http://edamontology.org/data_2904,Map accession, +http://edamontology.org/data_2905,Lipid accession, +http://edamontology.org/data_2906,Peptide ID, +http://edamontology.org/data_2907,Protein accession, +http://edamontology.org/data_2908,Organism accession, +http://edamontology.org/data_2909,Organism name, +http://edamontology.org/data_2910,Protein family accession, +http://edamontology.org/data_2911,Transcription factor accession, +http://edamontology.org/data_2912,Strain accession, +http://edamontology.org/data_2913,Virus identifier, +http://edamontology.org/data_2914,Sequence features metadata, +http://edamontology.org/data_2915,Gramene identifier, +http://edamontology.org/data_2916,DDBJ accession, +http://edamontology.org/data_2917,ConsensusPathDB identifier, +http://edamontology.org/data_2925,Sequence data, +http://edamontology.org/data_2927,Codon usage, +http://edamontology.org/data_2954,Article report, +http://edamontology.org/data_2955,Sequence report, +http://edamontology.org/data_2956,Protein secondary structure, +http://edamontology.org/data_2957,Hopp and Woods plot, +http://edamontology.org/data_2958,Nucleic acid melting curve, +http://edamontology.org/data_2959,Nucleic acid probability profile, +http://edamontology.org/data_2960,Nucleic acid temperature profile, +http://edamontology.org/data_2961,Gene regulatory network report, +http://edamontology.org/data_2965,2D PAGE gel report, +http://edamontology.org/data_2966,Oligonucleotide probe sets annotation, +http://edamontology.org/data_2967,Microarray image, +http://edamontology.org/data_2968,Image, +http://edamontology.org/data_2969,Sequence image, +http://edamontology.org/data_2970,Protein hydropathy data, +http://edamontology.org/data_2971,Workflow data, +http://edamontology.org/data_2972,Workflow, +http://edamontology.org/data_2973,Secondary structure data, +http://edamontology.org/data_2974,Protein sequence (raw), +http://edamontology.org/data_2975,Nucleic acid sequence (raw), +http://edamontology.org/data_2976,Protein sequence, +http://edamontology.org/data_2977,Nucleic acid sequence, +http://edamontology.org/data_2978,Reaction data, +http://edamontology.org/data_2979,Peptide property, +http://edamontology.org/data_2980,Protein classification, +http://edamontology.org/data_2981,Sequence motif data, +http://edamontology.org/data_2982,Sequence profile data, +http://edamontology.org/data_2983,Pathway or network data, +http://edamontology.org/data_2984,Pathway or network report, +http://edamontology.org/data_2985,Nucleic acid thermodynamic data, +http://edamontology.org/data_2986,Nucleic acid classification, +http://edamontology.org/data_2987,Classification report, +http://edamontology.org/data_2989,Protein features report (key folding sites), +http://edamontology.org/data_2991,Protein geometry data, +http://edamontology.org/data_2992,Protein structure image, +http://edamontology.org/data_2994,Phylogenetic character weights, +http://edamontology.org/data_3002,Annotation track, +http://edamontology.org/data_3021,UniProt accession, +http://edamontology.org/data_3022,NCBI genetic code ID, +http://edamontology.org/data_3025,Ontology concept identifier, +http://edamontology.org/data_3026,GO concept name (biological process), +http://edamontology.org/data_3027,GO concept name (molecular function), +http://edamontology.org/data_3028,Taxonomy, +http://edamontology.org/data_3029,Protein ID (EMBL/GenBank/DDBJ), +http://edamontology.org/data_3031,Core data, +http://edamontology.org/data_3034,Sequence feature identifier, +http://edamontology.org/data_3035,Structure identifier, +http://edamontology.org/data_3036,Matrix identifier, +http://edamontology.org/data_3085,Protein sequence composition, +http://edamontology.org/data_3086,Nucleic acid sequence composition (report), +http://edamontology.org/data_3101,Protein domain classification node, +http://edamontology.org/data_3102,CAS number, +http://edamontology.org/data_3103,ATC code, +http://edamontology.org/data_3104,UNII, +http://edamontology.org/data_3105,Geotemporal metadata, +http://edamontology.org/data_3106,System metadata, +http://edamontology.org/data_3107,Sequence feature name, +http://edamontology.org/data_3108,Experimental measurement, +http://edamontology.org/data_3110,Raw microarray data, +http://edamontology.org/data_3111,Processed microarray data, +http://edamontology.org/data_3112,Gene expression matrix, +http://edamontology.org/data_3113,Sample annotation, +http://edamontology.org/data_3115,Microarray metadata, +http://edamontology.org/data_3116,Microarray protocol annotation, +http://edamontology.org/data_3117,Microarray hybridisation data, +http://edamontology.org/data_3119,Sequence features (compositionally-biased regions), +http://edamontology.org/data_3122,Nucleic acid features (difference and change), +http://edamontology.org/data_3128,Nucleic acid structure report, +http://edamontology.org/data_3129,Protein features report (repeats), +http://edamontology.org/data_3130,Sequence motif matches (protein), +http://edamontology.org/data_3131,Sequence motif matches (nucleic acid), +http://edamontology.org/data_3132,Nucleic acid features (d-loop), +http://edamontology.org/data_3133,Nucleic acid features (stem loop), +http://edamontology.org/data_3134,Gene transcript report, +http://edamontology.org/data_3137,Non-coding RNA, +http://edamontology.org/data_3138,Transcriptional features (report), +http://edamontology.org/data_3140,Nucleic acid features (immunoglobulin gene structure), +http://edamontology.org/data_3141,SCOP class, +http://edamontology.org/data_3142,SCOP fold, +http://edamontology.org/data_3143,SCOP superfamily, +http://edamontology.org/data_3144,SCOP family, +http://edamontology.org/data_3145,SCOP protein, +http://edamontology.org/data_3146,SCOP species, +http://edamontology.org/data_3147,Mass spectrometry experiment, +http://edamontology.org/data_3148,Gene family report, +http://edamontology.org/data_3153,Protein image, +http://edamontology.org/data_3154,Protein alignment, +http://edamontology.org/data_3165,NGS experiment, +http://edamontology.org/data_3181,Sequence assembly report, +http://edamontology.org/data_3210,Genome index, +http://edamontology.org/data_3231,GWAS report, +http://edamontology.org/data_3236,Cytoband position, +http://edamontology.org/data_3238,Cell type ontology ID, +http://edamontology.org/data_3241,Kinetic model, +http://edamontology.org/data_3264,COSMIC ID, +http://edamontology.org/data_3265,HGMD ID, +http://edamontology.org/data_3266,Sequence assembly ID, +http://edamontology.org/data_3268,Sequence feature type, +http://edamontology.org/data_3269,Gene homology (report), +http://edamontology.org/data_3270,Ensembl gene tree ID, +http://edamontology.org/data_3271,Gene tree, +http://edamontology.org/data_3272,Species tree, +http://edamontology.org/data_3273,Sample ID, +http://edamontology.org/data_3274,MGI accession, +http://edamontology.org/data_3275,Phenotype name, +http://edamontology.org/data_3354,Transition matrix, +http://edamontology.org/data_3355,Emission matrix, +http://edamontology.org/data_3356,Hidden Markov model, +http://edamontology.org/data_3358,Format identifier, +http://edamontology.org/data_3424,Raw image, +http://edamontology.org/data_3425,Carbohydrate property, +http://edamontology.org/data_3426,Proteomics experiment report, +http://edamontology.org/data_3427,RNAi report, +http://edamontology.org/data_3428,Simulation experiment report, +http://edamontology.org/data_3442,MRI image, +http://edamontology.org/data_3449,Cell migration track image, +http://edamontology.org/data_3451,Rate of association, +http://edamontology.org/data_3479,Gene order, +http://edamontology.org/data_3483,Spectrum, +http://edamontology.org/data_3488,NMR spectrum, +http://edamontology.org/data_3490,Chemical structure sketch, +http://edamontology.org/data_3492,Nucleic acid signature, +http://edamontology.org/data_3494,DNA sequence, +http://edamontology.org/data_3495,RNA sequence, +http://edamontology.org/data_3496,RNA sequence (raw), +http://edamontology.org/data_3497,DNA sequence (raw), +http://edamontology.org/data_3498,Sequence variations, +http://edamontology.org/data_3505,Bibliography, +http://edamontology.org/data_3509,Ontology mapping, +http://edamontology.org/data_3546,Image metadata, +http://edamontology.org/data_3558,Clinical trial report, +http://edamontology.org/data_3567,Reference sample report, +http://edamontology.org/data_3568,Gene Expression Atlas Experiment ID, +http://edamontology.org/data_3667,Disease identifier, +http://edamontology.org/data_3668,Disease name, +http://edamontology.org/data_3669,Training material, +http://edamontology.org/data_3670,Online course, +http://edamontology.org/data_3671,Text, +http://edamontology.org/data_3707,Biodiversity data, +http://edamontology.org/data_3716,Biosafety report, +http://edamontology.org/data_3717,Isolation report, +http://edamontology.org/data_3718,Pathogenicity report, +http://edamontology.org/data_3719,Biosafety classification, +http://edamontology.org/data_3720,Geographic location, +http://edamontology.org/data_3721,Isolation source, +http://edamontology.org/data_3722,Physiology parameter, +http://edamontology.org/data_3723,Morphology parameter, +http://edamontology.org/data_3724,Cultivation parameter, +http://edamontology.org/data_3732,Sequencing metadata name, +http://edamontology.org/data_3733,Flow cell identifier, +http://edamontology.org/data_3734,Lane identifier, +http://edamontology.org/data_3735,Run number, +http://edamontology.org/data_3736,Ecological data, +http://edamontology.org/data_3737,Alpha diversity data, +http://edamontology.org/data_3738,Beta diversity data, +http://edamontology.org/data_3739,Gamma diversity data, +http://edamontology.org/data_3743,Ordination plot, +http://edamontology.org/data_3753,Over-representation data, +http://edamontology.org/data_3754,GO-term enrichment data, +http://edamontology.org/data_3756,Localisation score, +http://edamontology.org/data_3757,Unimod ID, +http://edamontology.org/data_3759,ProteomeXchange ID, +http://edamontology.org/data_3768,Clustered expression profiles, +http://edamontology.org/data_3769,BRENDA ontology concept ID, +http://edamontology.org/data_3779,Annotated text, +http://edamontology.org/data_3786,Query script, +http://edamontology.org/data_3805,3D EM Map, +http://edamontology.org/data_3806,3D EM Mask, +http://edamontology.org/data_3807,EM Movie, +http://edamontology.org/data_3808,EM Micrograph, +http://edamontology.org/data_3842,Molecular simulation data, +http://edamontology.org/data_3856,RNA central ID, +http://edamontology.org/data_3861,Electronic health record, +http://edamontology.org/data_3869,Simulation, +http://edamontology.org/data_3870,Trajectory data, +http://edamontology.org/data_3871,Forcefield parameters, +http://edamontology.org/data_3872,Topology data, +http://edamontology.org/data_3905,Histogram, +http://edamontology.org/data_3914,Quality control report, +http://edamontology.org/data_3917,Count matrix, +http://edamontology.org/data_3924,DNA structure alignment, +http://edamontology.org/data_3932,Q-value, +http://edamontology.org/data_3949,Profile HMM, +http://edamontology.org/data_3952,Pathway ID (WikiPathways), +http://edamontology.org/data_3953,Pathway overrepresentation data, +http://edamontology.org/format_1196,SMILES, +http://edamontology.org/format_1197,InChI, +http://edamontology.org/format_1198,mf, +http://edamontology.org/format_1199,InChIKey, +http://edamontology.org/format_1200,smarts, +http://edamontology.org/format_1206,unambiguous pure, +http://edamontology.org/format_1207,nucleotide, +http://edamontology.org/format_1208,protein, +http://edamontology.org/format_1209,consensus, +http://edamontology.org/format_1210,pure nucleotide, +http://edamontology.org/format_1211,unambiguous pure nucleotide, +http://edamontology.org/format_1212,dna, +http://edamontology.org/format_1213,rna, +http://edamontology.org/format_1214,unambiguous pure dna, +http://edamontology.org/format_1215,pure dna, +http://edamontology.org/format_1216,unambiguous pure rna sequence, +http://edamontology.org/format_1217,pure rna, +http://edamontology.org/format_1218,unambiguous pure protein, +http://edamontology.org/format_1219,pure protein, +http://edamontology.org/format_1228,UniGene entry format, +http://edamontology.org/format_1247,COG sequence cluster format, +http://edamontology.org/format_1248,EMBL feature location, +http://edamontology.org/format_1295,quicktandem, +http://edamontology.org/format_1296,Sanger inverted repeats, +http://edamontology.org/format_1297,EMBOSS repeat, +http://edamontology.org/format_1316,est2genome format, +http://edamontology.org/format_1318,restrict format, +http://edamontology.org/format_1319,restover format, +http://edamontology.org/format_1320,REBASE restriction sites, +http://edamontology.org/format_1332,FASTA search results format, +http://edamontology.org/format_1333,BLAST results, +http://edamontology.org/format_1334,mspcrunch, +http://edamontology.org/format_1335,Smith-Waterman format, +http://edamontology.org/format_1336,dhf, +http://edamontology.org/format_1337,lhf, +http://edamontology.org/format_1341,InterPro hits format, +http://edamontology.org/format_1342,InterPro protein view report format, +http://edamontology.org/format_1343,InterPro match table format, +http://edamontology.org/format_1349,HMMER Dirichlet prior, +http://edamontology.org/format_1350,MEME Dirichlet prior, +http://edamontology.org/format_1351,HMMER emission and transition, +http://edamontology.org/format_1356,prosite-pattern, +http://edamontology.org/format_1357,EMBOSS sequence pattern, +http://edamontology.org/format_1360,meme-motif, +http://edamontology.org/format_1366,prosite-profile, +http://edamontology.org/format_1367,JASPAR format, +http://edamontology.org/format_1369,MEME background Markov model, +http://edamontology.org/format_1370,HMMER format, +http://edamontology.org/format_1391,HMMER-aln, +http://edamontology.org/format_1392,DIALIGN format, +http://edamontology.org/format_1393,daf, +http://edamontology.org/format_1419,Sequence-MEME profile alignment, +http://edamontology.org/format_1421,HMMER profile alignment (sequences versus HMMs), +http://edamontology.org/format_1422,HMMER profile alignment (HMM versus sequences), +http://edamontology.org/format_1423,Phylip distance matrix, +http://edamontology.org/format_1424,ClustalW dendrogram, +http://edamontology.org/format_1425,Phylip tree raw, +http://edamontology.org/format_1430,Phylip continuous quantitative characters, +http://edamontology.org/format_1431,Phylogenetic property values format, +http://edamontology.org/format_1432,Phylip character frequencies format, +http://edamontology.org/format_1433,Phylip discrete states format, +http://edamontology.org/format_1434,Phylip cliques format, +http://edamontology.org/format_1435,Phylip tree format, +http://edamontology.org/format_1436,TreeBASE format, +http://edamontology.org/format_1437,TreeFam format, +http://edamontology.org/format_1445,Phylip tree distance format, +http://edamontology.org/format_1454,dssp, +http://edamontology.org/format_1455,hssp, +http://edamontology.org/format_1457,Dot-bracket format, +http://edamontology.org/format_1458,Vienna local RNA secondary structure format, +http://edamontology.org/format_1475,PDB database entry format, +http://edamontology.org/format_1476,PDB, +http://edamontology.org/format_1477,mmCIF, +http://edamontology.org/format_1478,PDBML, +http://edamontology.org/format_1500,Domainatrix 3D-1D scoring matrix format, +http://edamontology.org/format_1504,aaindex, +http://edamontology.org/format_1511,IntEnz enzyme report format, +http://edamontology.org/format_1512,BRENDA enzyme report format, +http://edamontology.org/format_1513,KEGG REACTION enzyme report format, +http://edamontology.org/format_1514,KEGG ENZYME enzyme report format, +http://edamontology.org/format_1515,REBASE proto enzyme report format, +http://edamontology.org/format_1516,REBASE withrefm enzyme report format, +http://edamontology.org/format_1551,Pcons report format, +http://edamontology.org/format_1552,ProQ report format, +http://edamontology.org/format_1563,SMART domain assignment report format, +http://edamontology.org/format_1568,BIND entry format, +http://edamontology.org/format_1569,IntAct entry format, +http://edamontology.org/format_1570,InterPro entry format, +http://edamontology.org/format_1571,InterPro entry abstract format, +http://edamontology.org/format_1572,Gene3D entry format, +http://edamontology.org/format_1573,PIRSF entry format, +http://edamontology.org/format_1574,PRINTS entry format, +http://edamontology.org/format_1575,Panther Families and HMMs entry format, +http://edamontology.org/format_1576,Pfam entry format, +http://edamontology.org/format_1577,SMART entry format, +http://edamontology.org/format_1578,Superfamily entry format, +http://edamontology.org/format_1579,TIGRFam entry format, +http://edamontology.org/format_1580,ProDom entry format, +http://edamontology.org/format_1581,FSSP entry format, +http://edamontology.org/format_1582,findkm, +http://edamontology.org/format_1603,Ensembl gene report format, +http://edamontology.org/format_1604,DictyBase gene report format, +http://edamontology.org/format_1605,CGD gene report format, +http://edamontology.org/format_1606,DragonDB gene report format, +http://edamontology.org/format_1607,EcoCyc gene report format, +http://edamontology.org/format_1608,FlyBase gene report format, +http://edamontology.org/format_1609,Gramene gene report format, +http://edamontology.org/format_1610,KEGG GENES gene report format, +http://edamontology.org/format_1611,MaizeGDB gene report format, +http://edamontology.org/format_1612,MGD gene report format, +http://edamontology.org/format_1613,RGD gene report format, +http://edamontology.org/format_1614,SGD gene report format, +http://edamontology.org/format_1615,GeneDB gene report format, +http://edamontology.org/format_1616,TAIR gene report format, +http://edamontology.org/format_1617,WormBase gene report format, +http://edamontology.org/format_1618,ZFIN gene report format, +http://edamontology.org/format_1619,TIGR gene report format, +http://edamontology.org/format_1620,dbSNP polymorphism report format, +http://edamontology.org/format_1623,OMIM entry format, +http://edamontology.org/format_1624,HGVbase entry format, +http://edamontology.org/format_1625,HIVDB entry format, +http://edamontology.org/format_1626,KEGG DISEASE entry format, +http://edamontology.org/format_1627,Primer3 primer, +http://edamontology.org/format_1628,ABI, +http://edamontology.org/format_1629,mira, +http://edamontology.org/format_1630,CAF, +http://edamontology.org/format_1631,EXP, +http://edamontology.org/format_1632,SCF, +http://edamontology.org/format_1633,PHD, +http://edamontology.org/format_1637,dat, +http://edamontology.org/format_1638,cel, +http://edamontology.org/format_1639,affymetrix, +http://edamontology.org/format_1640,ArrayExpress entry format, +http://edamontology.org/format_1641,affymetrix-exp, +http://edamontology.org/format_1644,CHP, +http://edamontology.org/format_1645,EMDB entry format, +http://edamontology.org/format_1647,KEGG PATHWAY entry format, +http://edamontology.org/format_1648,MetaCyc entry format, +http://edamontology.org/format_1649,HumanCyc entry format, +http://edamontology.org/format_1650,INOH entry format, +http://edamontology.org/format_1651,PATIKA entry format, +http://edamontology.org/format_1652,Reactome entry format, +http://edamontology.org/format_1653,aMAZE entry format, +http://edamontology.org/format_1654,CPDB entry format, +http://edamontology.org/format_1655,Panther Pathways entry format, +http://edamontology.org/format_1665,Taverna workflow format, +http://edamontology.org/format_1666,BioModel mathematical model format, +http://edamontology.org/format_1697,KEGG LIGAND entry format, +http://edamontology.org/format_1698,KEGG COMPOUND entry format, +http://edamontology.org/format_1699,KEGG PLANT entry format, +http://edamontology.org/format_1700,KEGG GLYCAN entry format, +http://edamontology.org/format_1701,PubChem entry format, +http://edamontology.org/format_1702,ChemSpider entry format, +http://edamontology.org/format_1703,ChEBI entry format, +http://edamontology.org/format_1704,MSDchem ligand dictionary entry format, +http://edamontology.org/format_1705,HET group dictionary entry format, +http://edamontology.org/format_1706,KEGG DRUG entry format, +http://edamontology.org/format_1734,PubMed citation, +http://edamontology.org/format_1735,Medline Display Format, +http://edamontology.org/format_1736,CiteXplore-core, +http://edamontology.org/format_1737,CiteXplore-all, +http://edamontology.org/format_1739,pmc, +http://edamontology.org/format_1740,iHOP format, +http://edamontology.org/format_1741,OSCAR format, +http://edamontology.org/format_1747,PDB atom record format, +http://edamontology.org/format_1760,CATH chain report format, +http://edamontology.org/format_1761,CATH PDB report format, +http://edamontology.org/format_1782,NCBI gene report format, +http://edamontology.org/format_1808,GeneIlluminator gene report format, +http://edamontology.org/format_1809,BacMap gene card format, +http://edamontology.org/format_1810,ColiCard report format, +http://edamontology.org/format_1861,PlasMapper TextMap, +http://edamontology.org/format_1910,newick, +http://edamontology.org/format_1911,TreeCon format, +http://edamontology.org/format_1912,Nexus format, +http://edamontology.org/format_1915,Format, +http://edamontology.org/format_1918,Atomic data format, +http://edamontology.org/format_1919,Sequence record format, +http://edamontology.org/format_1920,Sequence feature annotation format, +http://edamontology.org/format_1921,Alignment format, +http://edamontology.org/format_1923,acedb, +http://edamontology.org/format_1924,clustal sequence format, +http://edamontology.org/format_1925,codata, +http://edamontology.org/format_1926,dbid, +http://edamontology.org/format_1927,EMBL format, +http://edamontology.org/format_1928,Staden experiment format, +http://edamontology.org/format_1929,FASTA, +http://edamontology.org/format_1930,FASTQ,fq|fastq +http://edamontology.org/format_1931,FASTQ-illumina, +http://edamontology.org/format_1932,FASTQ-sanger, +http://edamontology.org/format_1933,FASTQ-solexa, +http://edamontology.org/format_1934,fitch program, +http://edamontology.org/format_1935,GCG, +http://edamontology.org/format_1936,GenBank format, +http://edamontology.org/format_1937,genpept, +http://edamontology.org/format_1938,GFF2-seq, +http://edamontology.org/format_1939,GFF3-seq, +http://edamontology.org/format_1940,giFASTA format, +http://edamontology.org/format_1941,hennig86, +http://edamontology.org/format_1942,ig, +http://edamontology.org/format_1943,igstrict, +http://edamontology.org/format_1944,jackknifer, +http://edamontology.org/format_1945,mase format, +http://edamontology.org/format_1946,mega-seq, +http://edamontology.org/format_1947,GCG MSF, +http://edamontology.org/format_1948,nbrf/pir, +http://edamontology.org/format_1949,nexus-seq, +http://edamontology.org/format_1950,pdbatom, +http://edamontology.org/format_1951,pdbatomnuc, +http://edamontology.org/format_1952,pdbseqresnuc, +http://edamontology.org/format_1953,pdbseqres, +http://edamontology.org/format_1954,Pearson format, +http://edamontology.org/format_1955,phylip sequence format, +http://edamontology.org/format_1956,phylipnon sequence format, +http://edamontology.org/format_1957,raw, +http://edamontology.org/format_1958,refseqp, +http://edamontology.org/format_1959,selex sequence format, +http://edamontology.org/format_1960,Staden format, +http://edamontology.org/format_1961,Stockholm format, +http://edamontology.org/format_1962,strider format, +http://edamontology.org/format_1963,UniProtKB format, +http://edamontology.org/format_1964,plain text format (unformatted), +http://edamontology.org/format_1965,treecon sequence format, +http://edamontology.org/format_1966,ASN.1 sequence format, +http://edamontology.org/format_1967,DAS format, +http://edamontology.org/format_1968,dasdna, +http://edamontology.org/format_1969,debug-seq, +http://edamontology.org/format_1970,jackknifernon, +http://edamontology.org/format_1971,meganon sequence format, +http://edamontology.org/format_1972,NCBI format, +http://edamontology.org/format_1973,nexusnon, +http://edamontology.org/format_1974,GFF2, +http://edamontology.org/format_1975,GFF3, +http://edamontology.org/format_1976,pir, +http://edamontology.org/format_1977,swiss feature, +http://edamontology.org/format_1978,DASGFF, +http://edamontology.org/format_1979,debug-feat, +http://edamontology.org/format_1980,EMBL feature, +http://edamontology.org/format_1981,GenBank feature, +http://edamontology.org/format_1982,ClustalW format, +http://edamontology.org/format_1983,debug, +http://edamontology.org/format_1984,FASTA-aln, +http://edamontology.org/format_1985,markx0, +http://edamontology.org/format_1986,markx1, +http://edamontology.org/format_1987,markx10, +http://edamontology.org/format_1988,markx2, +http://edamontology.org/format_1989,markx3, +http://edamontology.org/format_1990,match, +http://edamontology.org/format_1991,mega, +http://edamontology.org/format_1992,meganon, +http://edamontology.org/format_1993,msf alignment format, +http://edamontology.org/format_1994,nexus alignment format, +http://edamontology.org/format_1995,nexusnon alignment format, +http://edamontology.org/format_1996,pair, +http://edamontology.org/format_1997,PHYLIP format, +http://edamontology.org/format_1998,PHYLIP sequential, +http://edamontology.org/format_1999,scores format, +http://edamontology.org/format_2000,selex, +http://edamontology.org/format_2001,EMBOSS simple format, +http://edamontology.org/format_2002,srs format, +http://edamontology.org/format_2003,srspair, +http://edamontology.org/format_2004,T-Coffee format, +http://edamontology.org/format_2005,TreeCon-seq, +http://edamontology.org/format_2006,Phylogenetic tree format, +http://edamontology.org/format_2013,Biological pathway or network format, +http://edamontology.org/format_2014,Sequence-profile alignment format, +http://edamontology.org/format_2015,Sequence-profile alignment (HMM) format, +http://edamontology.org/format_2017,Amino acid index format, +http://edamontology.org/format_2020,Article format, +http://edamontology.org/format_2021,Text mining report format, +http://edamontology.org/format_2027,Enzyme kinetics report format, +http://edamontology.org/format_2030,Chemical data format, +http://edamontology.org/format_2031,Gene annotation format, +http://edamontology.org/format_2032,Workflow format, +http://edamontology.org/format_2033,Tertiary structure format, +http://edamontology.org/format_2034,Biological model format, +http://edamontology.org/format_2035,Chemical formula format, +http://edamontology.org/format_2036,Phylogenetic character data format, +http://edamontology.org/format_2037,Phylogenetic continuous quantitative character format, +http://edamontology.org/format_2038,Phylogenetic discrete states format, +http://edamontology.org/format_2039,Phylogenetic tree report (cliques) format, +http://edamontology.org/format_2040,Phylogenetic tree report (invariants) format, +http://edamontology.org/format_2045,Electron microscopy model format, +http://edamontology.org/format_2049,Phylogenetic tree report (tree distances) format, +http://edamontology.org/format_2051,Polymorphism report format, +http://edamontology.org/format_2052,Protein family report format, +http://edamontology.org/format_2054,Protein interaction format, +http://edamontology.org/format_2055,Sequence assembly format, +http://edamontology.org/format_2056,Microarray experiment data format, +http://edamontology.org/format_2057,Sequence trace format, +http://edamontology.org/format_2058,Gene expression report format, +http://edamontology.org/format_2059,Genotype and phenotype annotation format, +http://edamontology.org/format_2060,Map format, +http://edamontology.org/format_2061,Nucleic acid features (primers) format, +http://edamontology.org/format_2062,Protein report format, +http://edamontology.org/format_2063,Protein report (enzyme) format, +http://edamontology.org/format_2064,3D-1D scoring matrix format, +http://edamontology.org/format_2065,Protein structure report (quality evaluation) format, +http://edamontology.org/format_2066,Database hits (sequence) format, +http://edamontology.org/format_2067,Sequence distance matrix format, +http://edamontology.org/format_2068,Sequence motif format, +http://edamontology.org/format_2069,Sequence profile format, +http://edamontology.org/format_2072,Hidden Markov model format, +http://edamontology.org/format_2074,Dirichlet distribution format, +http://edamontology.org/format_2075,HMM emission and transition counts format, +http://edamontology.org/format_2076,RNA secondary structure format, +http://edamontology.org/format_2077,Protein secondary structure format, +http://edamontology.org/format_2078,Sequence range format, +http://edamontology.org/format_2094,pure, +http://edamontology.org/format_2095,unpure, +http://edamontology.org/format_2096,unambiguous sequence, +http://edamontology.org/format_2097,ambiguous, +http://edamontology.org/format_2155,Sequence features (repeats) format, +http://edamontology.org/format_2158,Nucleic acid features (restriction sites) format, +http://edamontology.org/format_2159,Gene features (coding region) format, +http://edamontology.org/format_2170,Sequence cluster format, +http://edamontology.org/format_2171,Sequence cluster format (protein), +http://edamontology.org/format_2172,Sequence cluster format (nucleic acid), +http://edamontology.org/format_2175,Gene cluster format, +http://edamontology.org/format_2181,EMBL-like (text), +http://edamontology.org/format_2182,FASTQ-like format (text), +http://edamontology.org/format_2183,EMBLXML, +http://edamontology.org/format_2184,cdsxml, +http://edamontology.org/format_2185,insdxml, +http://edamontology.org/format_2186,geneseq, +http://edamontology.org/format_2187,UniProt-like (text), +http://edamontology.org/format_2188,UniProt format, +http://edamontology.org/format_2189,ipi, +http://edamontology.org/format_2194,medline, +http://edamontology.org/format_2195,Ontology format, +http://edamontology.org/format_2196,OBO format, +http://edamontology.org/format_2197,OWL format, +http://edamontology.org/format_2200,FASTA-like (text), +http://edamontology.org/format_2202,Sequence record full format, +http://edamontology.org/format_2203,Sequence record lite format, +http://edamontology.org/format_2204,EMBL format (XML), +http://edamontology.org/format_2205,GenBank-like format (text), +http://edamontology.org/format_2206,Sequence feature table format (text), +http://edamontology.org/format_2210,Strain data format, +http://edamontology.org/format_2211,CIP strain data format, +http://edamontology.org/format_2243,phylip property values, +http://edamontology.org/format_2303,STRING entry format (HTML), +http://edamontology.org/format_2304,STRING entry format (XML), +http://edamontology.org/format_2305,GFF, +http://edamontology.org/format_2306,GTF, +http://edamontology.org/format_2310,FASTA-HTML, +http://edamontology.org/format_2311,EMBL-HTML, +http://edamontology.org/format_2322,BioCyc enzyme report format, +http://edamontology.org/format_2323,ENZYME enzyme report format, +http://edamontology.org/format_2328,PseudoCAP gene report format, +http://edamontology.org/format_2329,GeneCards gene report format, +http://edamontology.org/format_2330,Textual format, +http://edamontology.org/format_2331,HTML, +http://edamontology.org/format_2332,XML,xml +http://edamontology.org/format_2333,Binary format, +http://edamontology.org/format_2334,URI format, +http://edamontology.org/format_2341,NCI-Nature pathway entry format, +http://edamontology.org/format_2350,Format (by type of data), +http://edamontology.org/format_2352,BioXSD (XML), +http://edamontology.org/format_2376,RDF format, +http://edamontology.org/format_2532,GenBank-HTML, +http://edamontology.org/format_2542,Protein features (domains) format, +http://edamontology.org/format_2543,EMBL-like format, +http://edamontology.org/format_2545,FASTQ-like format, +http://edamontology.org/format_2546,FASTA-like, +http://edamontology.org/format_2547,uniprotkb-like format, +http://edamontology.org/format_2548,Sequence feature table format, +http://edamontology.org/format_2549,OBO, +http://edamontology.org/format_2550,OBO-XML, +http://edamontology.org/format_2551,Sequence record format (text), +http://edamontology.org/format_2552,Sequence record format (XML), +http://edamontology.org/format_2553,Sequence feature table format (XML), +http://edamontology.org/format_2554,Alignment format (text), +http://edamontology.org/format_2555,Alignment format (XML), +http://edamontology.org/format_2556,Phylogenetic tree format (text), +http://edamontology.org/format_2557,Phylogenetic tree format (XML), +http://edamontology.org/format_2558,EMBL-like (XML), +http://edamontology.org/format_2559,GenBank-like format, +http://edamontology.org/format_2560,STRING entry format, +http://edamontology.org/format_2561,Sequence assembly format (text), +http://edamontology.org/format_2562,Amino acid identifier format, +http://edamontology.org/format_2566,completely unambiguous, +http://edamontology.org/format_2567,completely unambiguous pure, +http://edamontology.org/format_2568,completely unambiguous pure nucleotide, +http://edamontology.org/format_2569,completely unambiguous pure dna, +http://edamontology.org/format_2570,completely unambiguous pure rna sequence, +http://edamontology.org/format_2571,Raw sequence format, +http://edamontology.org/format_2572,BAM, +http://edamontology.org/format_2573,SAM, +http://edamontology.org/format_2585,SBML, +http://edamontology.org/format_2607,completely unambiguous pure protein, +http://edamontology.org/format_2848,Bibliographic reference format, +http://edamontology.org/format_2919,Sequence annotation track format, +http://edamontology.org/format_2920,Alignment format (pair only), +http://edamontology.org/format_2921,Sequence variation annotation format, +http://edamontology.org/format_2922,markx0 variant, +http://edamontology.org/format_2923,mega variant, +http://edamontology.org/format_2924,Phylip format variant, +http://edamontology.org/format_3000,AB1, +http://edamontology.org/format_3001,ACE, +http://edamontology.org/format_3003,BED, +http://edamontology.org/format_3004,bigBed, +http://edamontology.org/format_3005,WIG, +http://edamontology.org/format_3006,bigWig, +http://edamontology.org/format_3007,PSL, +http://edamontology.org/format_3008,MAF, +http://edamontology.org/format_3009,2bit, +http://edamontology.org/format_3010,.nib, +http://edamontology.org/format_3011,genePred, +http://edamontology.org/format_3012,pgSnp, +http://edamontology.org/format_3013,axt, +http://edamontology.org/format_3014,LAV, +http://edamontology.org/format_3015,Pileup, +http://edamontology.org/format_3016,VCF, +http://edamontology.org/format_3017,SRF, +http://edamontology.org/format_3018,ZTR, +http://edamontology.org/format_3019,GVF, +http://edamontology.org/format_3020,BCF, +http://edamontology.org/format_3033,Matrix format, +http://edamontology.org/format_3097,Protein domain classification format, +http://edamontology.org/format_3098,Raw SCOP domain classification format, +http://edamontology.org/format_3099,Raw CATH domain classification format, +http://edamontology.org/format_3100,CATH domain report format, +http://edamontology.org/format_3155,SBRML, +http://edamontology.org/format_3156,BioPAX, +http://edamontology.org/format_3157,EBI Application Result XML, +http://edamontology.org/format_3158,PSI MI XML (MIF), +http://edamontology.org/format_3159,phyloXML, +http://edamontology.org/format_3160,NeXML, +http://edamontology.org/format_3161,MAGE-ML, +http://edamontology.org/format_3162,MAGE-TAB, +http://edamontology.org/format_3163,GCDML, +http://edamontology.org/format_3164,GTrack, +http://edamontology.org/format_3166,Biological pathway or network report format, +http://edamontology.org/format_3167,Experiment annotation format, +http://edamontology.org/format_3235,Cytoband format, +http://edamontology.org/format_3239,CopasiML, +http://edamontology.org/format_3240,CellML, +http://edamontology.org/format_3242,PSI MI TAB (MITAB), +http://edamontology.org/format_3243,PSI-PAR, +http://edamontology.org/format_3244,mzML, +http://edamontology.org/format_3245,Mass spectrometry data format, +http://edamontology.org/format_3246,TraML, +http://edamontology.org/format_3247,mzIdentML, +http://edamontology.org/format_3248,mzQuantML, +http://edamontology.org/format_3249,GelML, +http://edamontology.org/format_3250,spML, +http://edamontology.org/format_3252,OWL Functional Syntax, +http://edamontology.org/format_3253,Manchester OWL Syntax, +http://edamontology.org/format_3254,KRSS2 Syntax, +http://edamontology.org/format_3255,Turtle, +http://edamontology.org/format_3256,N-Triples,nt +http://edamontology.org/format_3257,Notation3,n3 +http://edamontology.org/format_3261,RDF/XML,rdf +http://edamontology.org/format_3262,OWL/XML, +http://edamontology.org/format_3281,A2M, +http://edamontology.org/format_3284,SFF, +http://edamontology.org/format_3285,MAP, +http://edamontology.org/format_3286,PED, +http://edamontology.org/format_3287,Individual genetic data format, +http://edamontology.org/format_3288,PED/MAP, +http://edamontology.org/format_3309,CT, +http://edamontology.org/format_3310,SS, +http://edamontology.org/format_3311,RNAML, +http://edamontology.org/format_3312,GDE, +http://edamontology.org/format_3313,BLC, +http://edamontology.org/format_3326,Data index format, +http://edamontology.org/format_3327,BAI, +http://edamontology.org/format_3328,HMMER2, +http://edamontology.org/format_3329,HMMER3, +http://edamontology.org/format_3330,PO, +http://edamontology.org/format_3331,BLAST XML results format, +http://edamontology.org/format_3462,CRAM, +http://edamontology.org/format_3464,JSON,json +http://edamontology.org/format_3466,EPS, +http://edamontology.org/format_3467,GIF, +http://edamontology.org/format_3468,xls, +http://edamontology.org/format_3475,TSV,tsv|tab +http://edamontology.org/format_3476,Gene expression data format, +http://edamontology.org/format_3477,Cytoscape input file format, +http://edamontology.org/format_3484,ebwt, +http://edamontology.org/format_3485,RSF, +http://edamontology.org/format_3486,GCG format variant, +http://edamontology.org/format_3487,BSML, +http://edamontology.org/format_3491,ebwtl, +http://edamontology.org/format_3499,Ensembl variation file format, +http://edamontology.org/format_3506,docx, +http://edamontology.org/format_3507,Document format, +http://edamontology.org/format_3508,PDF, +http://edamontology.org/format_3547,Image format, +http://edamontology.org/format_3548,DICOM format, +http://edamontology.org/format_3549,nii, +http://edamontology.org/format_3550,mhd, +http://edamontology.org/format_3551,nrrd, +http://edamontology.org/format_3554,R file format, +http://edamontology.org/format_3555,SPSS, +http://edamontology.org/format_3556,MHTML,mhtml|mht|eml +http://edamontology.org/format_3578,IDAT, +http://edamontology.org/format_3579,JPG, +http://edamontology.org/format_3580,rcc, +http://edamontology.org/format_3581,arff, +http://edamontology.org/format_3582,afg, +http://edamontology.org/format_3583,bedgraph, +http://edamontology.org/format_3584,bedstrict, +http://edamontology.org/format_3585,bed6, +http://edamontology.org/format_3586,bed12, +http://edamontology.org/format_3587,chrominfo, +http://edamontology.org/format_3588,customtrack, +http://edamontology.org/format_3589,csfasta, +http://edamontology.org/format_3590,HDF5, +http://edamontology.org/format_3591,TIFF, +http://edamontology.org/format_3592,BMP, +http://edamontology.org/format_3593,im, +http://edamontology.org/format_3594,pcd, +http://edamontology.org/format_3595,pcx, +http://edamontology.org/format_3596,ppm, +http://edamontology.org/format_3597,psd, +http://edamontology.org/format_3598,xbm, +http://edamontology.org/format_3599,xpm, +http://edamontology.org/format_3600,rgb, +http://edamontology.org/format_3601,pbm, +http://edamontology.org/format_3602,pgm, +http://edamontology.org/format_3603,PNG, +http://edamontology.org/format_3604,SVG, +http://edamontology.org/format_3605,rast, +http://edamontology.org/format_3606,Sequence quality report format (text), +http://edamontology.org/format_3607,qual, +http://edamontology.org/format_3608,qualsolexa, +http://edamontology.org/format_3609,qualillumina, +http://edamontology.org/format_3610,qualsolid, +http://edamontology.org/format_3611,qual454, +http://edamontology.org/format_3612,ENCODE peak format, +http://edamontology.org/format_3613,ENCODE narrow peak format, +http://edamontology.org/format_3614,ENCODE broad peak format, +http://edamontology.org/format_3615,bgzip, +http://edamontology.org/format_3616,tabix, +http://edamontology.org/format_3617,Graph format, +http://edamontology.org/format_3618,xgmml, +http://edamontology.org/format_3619,sif, +http://edamontology.org/format_3620,xlsx, +http://edamontology.org/format_3621,SQLite format, +http://edamontology.org/format_3622,Gemini SQLite format, +http://edamontology.org/format_3623,Index format, +http://edamontology.org/format_3624,snpeffdb, +http://edamontology.org/format_3626,MAT, +http://edamontology.org/format_3650,netCDF, +http://edamontology.org/format_3651,MGF, +http://edamontology.org/format_3652,dta, +http://edamontology.org/format_3653,pkl, +http://edamontology.org/format_3654,mzXML, +http://edamontology.org/format_3655,pepXML, +http://edamontology.org/format_3657,GPML, +http://edamontology.org/format_3665,K-mer countgraph,oxlicg +http://edamontology.org/format_3681,mzTab, +http://edamontology.org/format_3682,imzML metadata file,imzML +http://edamontology.org/format_3683,qcML, +http://edamontology.org/format_3684,PRIDE XML, +http://edamontology.org/format_3685,SED-ML, +http://edamontology.org/format_3686,COMBINE OMEX, +http://edamontology.org/format_3687,ISA-TAB, +http://edamontology.org/format_3688,SBtab, +http://edamontology.org/format_3689,BCML, +http://edamontology.org/format_3690,BDML, +http://edamontology.org/format_3691,BEL, +http://edamontology.org/format_3692,SBGN-ML, +http://edamontology.org/format_3693,AGP, +http://edamontology.org/format_3696,PS, +http://edamontology.org/format_3698,SRA format, +http://edamontology.org/format_3699,VDB, +http://edamontology.org/format_3700,Tabix index file format, +http://edamontology.org/format_3701,Sequin format, +http://edamontology.org/format_3702,MSF, +http://edamontology.org/format_3706,Biodiversity data format, +http://edamontology.org/format_3708,ABCD format, +http://edamontology.org/format_3709,GCT/Res format, +http://edamontology.org/format_3710,WIFF format,wiff +http://edamontology.org/format_3711,X!Tandem XML, +http://edamontology.org/format_3712,Thermo RAW, +http://edamontology.org/format_3713,Mascot .dat file, +http://edamontology.org/format_3714,MaxQuant APL peaklist format, +http://edamontology.org/format_3725,SBOL, +http://edamontology.org/format_3726,PMML, +http://edamontology.org/format_3727,OME-TIFF, +http://edamontology.org/format_3728,LocARNA PP, +http://edamontology.org/format_3729,dbGaP format, +http://edamontology.org/format_3746,BIOM format,biom +http://edamontology.org/format_3747,protXML, +http://edamontology.org/format_3748,Linked data format, +http://edamontology.org/format_3749,JSON-LD,jsonld +http://edamontology.org/format_3750,YAML,yaml|yml +http://edamontology.org/format_3751,DSV, +http://edamontology.org/format_3752,CSV,csv +http://edamontology.org/format_3758,SEQUEST .out file, +http://edamontology.org/format_3764,idXML, +http://edamontology.org/format_3765,KNIME datatable format, +http://edamontology.org/format_3770,UniProtKB XML, +http://edamontology.org/format_3771,UniProtKB RDF, +http://edamontology.org/format_3772,BioJSON (BioXSD), +http://edamontology.org/format_3773,BioYAML, +http://edamontology.org/format_3774,BioJSON (Jalview), +http://edamontology.org/format_3775,GSuite, +http://edamontology.org/format_3776,BTrack, +http://edamontology.org/format_3777,MCPD, +http://edamontology.org/format_3780,Annotated text format, +http://edamontology.org/format_3781,PubAnnotation format, +http://edamontology.org/format_3782,BioC, +http://edamontology.org/format_3783,PubTator format, +http://edamontology.org/format_3784,Open Annotation format, +http://edamontology.org/format_3785,BioNLP Shared Task format, +http://edamontology.org/format_3787,Query language, +http://edamontology.org/format_3788,SQL,sql +http://edamontology.org/format_3789,XQuery,xq|xqy|xquery +http://edamontology.org/format_3790,SPARQL, +http://edamontology.org/format_3804,xsd, +http://edamontology.org/format_3811,XMFA, +http://edamontology.org/format_3812,GEN, +http://edamontology.org/format_3813,SAMPLE file format, +http://edamontology.org/format_3814,SDF, +http://edamontology.org/format_3815,Molfile, +http://edamontology.org/format_3816,Mol2, +http://edamontology.org/format_3817,latex, +http://edamontology.org/format_3818,ELAND format, +http://edamontology.org/format_3819,Relaxed PHYLIP Interleaved, +http://edamontology.org/format_3820,Relaxed PHYLIP Sequential, +http://edamontology.org/format_3821,VisML, +http://edamontology.org/format_3822,GML, +http://edamontology.org/format_3823,FASTG, +http://edamontology.org/format_3824,NMR data format, +http://edamontology.org/format_3825,nmrML, +http://edamontology.org/format_3826,proBAM, +http://edamontology.org/format_3827,proBED, +http://edamontology.org/format_3828,Raw microarray data format, +http://edamontology.org/format_3829,GPR, +http://edamontology.org/format_3830,ARB, +http://edamontology.org/format_3832,consensusXML, +http://edamontology.org/format_3833,featureXML, +http://edamontology.org/format_3834,mzData, +http://edamontology.org/format_3835,TIDE TXT, +http://edamontology.org/format_3836,BLAST XML v2 results format, +http://edamontology.org/format_3838,pptx, +http://edamontology.org/format_3839,ibd,ibd +http://edamontology.org/format_3841,NLP format, +http://edamontology.org/format_3843,BEAST, +http://edamontology.org/format_3844,Chado-XML, +http://edamontology.org/format_3845,HSAML, +http://edamontology.org/format_3846,InterProScan XML, +http://edamontology.org/format_3847,KGML, +http://edamontology.org/format_3848,PubMed XML, +http://edamontology.org/format_3849,MSAML, +http://edamontology.org/format_3850,OrthoXML, +http://edamontology.org/format_3851,PSDML, +http://edamontology.org/format_3852,SeqXML, +http://edamontology.org/format_3853,UniParc XML, +http://edamontology.org/format_3854,UniRef XML, +http://edamontology.org/format_3857,CWL,cwl +http://edamontology.org/format_3858,Waters RAW, +http://edamontology.org/format_3859,JCAMP-DX, +http://edamontology.org/format_3862,NLP annotation format, +http://edamontology.org/format_3863,NLP corpus format, +http://edamontology.org/format_3864,mirGFF3, +http://edamontology.org/format_3865,RNA annotation format, +http://edamontology.org/format_3866,Trajectory format, +http://edamontology.org/format_3867,Trajectory format (binary), +http://edamontology.org/format_3868,Trajectory format (text), +http://edamontology.org/format_3873,HDF, +http://edamontology.org/format_3874,PCAzip, +http://edamontology.org/format_3875,XTC, +http://edamontology.org/format_3876,TNG, +http://edamontology.org/format_3877,XYZ, +http://edamontology.org/format_3878,mdcrd, +http://edamontology.org/format_3879,Topology format, +http://edamontology.org/format_3880,GROMACS top, +http://edamontology.org/format_3881,AMBER top, +http://edamontology.org/format_3882,PSF, +http://edamontology.org/format_3883,GROMACS itp, +http://edamontology.org/format_3884,FF parameter format, +http://edamontology.org/format_3885,BinPos, +http://edamontology.org/format_3886,RST, +http://edamontology.org/format_3887,CHARMM rtf, +http://edamontology.org/format_3888,AMBER frcmod, +http://edamontology.org/format_3889,AMBER off, +http://edamontology.org/format_3906,NMReDATA, +http://edamontology.org/format_3909,BpForms, +http://edamontology.org/format_3910,trr, +http://edamontology.org/format_3911,msh,msh +http://edamontology.org/format_3913,Loom,loom +http://edamontology.org/format_3915,Zarr,zarray|zgroup +http://edamontology.org/format_3916,MTX,mtx +http://edamontology.org/format_3951,BcForms, +http://edamontology.org/format_3956,N-Quads,nq +http://edamontology.org/format_3969,Vega,json +http://edamontology.org/format_3970,Vega-lite,json +http://edamontology.org/format_3971,NeuroML, +http://edamontology.org/format_3972,BNGL,bngl +http://edamontology.org/format_3973,Docker image format,dockerfile +http://edamontology.org/format_3975,GFA 1,gfa +http://edamontology.org/format_3976,GFA 2,gfa +http://edamontology.org/format_3977,ObjTables,xlsx +http://edamontology.org/format_3978,CONTIG,contig +http://edamontology.org/format_3979,WEGO,wego +http://edamontology.org/format_3980,RPKM,rpkm +http://edamontology.org/format_3981,TAR format,tar +http://edamontology.org/format_3982,CHAIN,chain +http://edamontology.org/format_3983,NET,net +http://edamontology.org/format_3984,QMAP,qmap +http://edamontology.org/format_3985,gxformat2,ga +http://edamontology.org/format_3986,WMV,wmv +http://edamontology.org/format_3987,ZIP format,zip +http://edamontology.org/format_3988,LSM,lsm +http://edamontology.org/format_3989,GZIP format,gz|gzip +http://edamontology.org/format_3990,AVI,avi +http://edamontology.org/format_3991,TrackDB,trackDb +http://edamontology.org/format_3992,CIGAR format,cigar +http://edamontology.org/format_3993,Stereolithography format,stl +http://edamontology.org/format_3994,U3D,u3d +http://edamontology.org/format_3995,Texture file format,tex +http://edamontology.org/format_3996,Python script,py +http://edamontology.org/format_3997,MPEG-4,mp4 +http://edamontology.org/format_3998,Perl script,pl +http://edamontology.org/format_3999,R script,R +http://edamontology.org/format_4000,R markdown,Rmd +http://edamontology.org/format_4001,NIFTI format,nii +http://edamontology.org/format_4002,pickle,pickle +http://edamontology.org/format_4003,NumPy format,npy +http://edamontology.org/format_4004,SimTools repertoire file format,repz +http://edamontology.org/format_4005,Configuration file format,cfg +http://edamontology.org/format_4006,Zstandard format,zst +http://edamontology.org/format_4007,MATLAB script,m +http://edamontology.org/operation_0004,Operation, +http://edamontology.org/operation_0224,Query and retrieval, +http://edamontology.org/operation_0225,Data retrieval (database cross-reference), +http://edamontology.org/operation_0226,Annotation, +http://edamontology.org/operation_0227,Indexing, +http://edamontology.org/operation_0228,Data index analysis, +http://edamontology.org/operation_0229,Annotation retrieval (sequence), +http://edamontology.org/operation_0230,Sequence generation, +http://edamontology.org/operation_0231,Sequence editing, +http://edamontology.org/operation_0232,Sequence merging, +http://edamontology.org/operation_0233,Sequence conversion, +http://edamontology.org/operation_0234,Sequence complexity calculation, +http://edamontology.org/operation_0235,Sequence ambiguity calculation, +http://edamontology.org/operation_0236,Sequence composition calculation, +http://edamontology.org/operation_0237,Repeat sequence analysis, +http://edamontology.org/operation_0238,Sequence motif discovery, +http://edamontology.org/operation_0239,Sequence motif recognition, +http://edamontology.org/operation_0240,Sequence motif comparison, +http://edamontology.org/operation_0241,Transcription regulatory sequence analysis, +http://edamontology.org/operation_0242,Conserved transcription regulatory sequence identification, +http://edamontology.org/operation_0243,Protein property calculation (from structure), +http://edamontology.org/operation_0244,Simulation analysis, +http://edamontology.org/operation_0245,Structural motif discovery, +http://edamontology.org/operation_0246,Protein domain recognition, +http://edamontology.org/operation_0247,Protein architecture analysis, +http://edamontology.org/operation_0248,Residue interaction calculation, +http://edamontology.org/operation_0249,Protein geometry calculation, +http://edamontology.org/operation_0250,Protein property calculation, +http://edamontology.org/operation_0252,Peptide immunogenicity prediction, +http://edamontology.org/operation_0253,Sequence feature detection, +http://edamontology.org/operation_0254,Data retrieval (feature table), +http://edamontology.org/operation_0255,Feature table query, +http://edamontology.org/operation_0256,Sequence feature comparison, +http://edamontology.org/operation_0257,Data retrieval (sequence alignment), +http://edamontology.org/operation_0258,Sequence alignment analysis, +http://edamontology.org/operation_0259,Sequence alignment comparison, +http://edamontology.org/operation_0260,Sequence alignment conversion, +http://edamontology.org/operation_0261,Nucleic acid property processing, +http://edamontology.org/operation_0262,Nucleic acid property calculation, +http://edamontology.org/operation_0264,Alternative splicing prediction, +http://edamontology.org/operation_0265,Frameshift detection, +http://edamontology.org/operation_0266,Vector sequence detection, +http://edamontology.org/operation_0267,Protein secondary structure prediction, +http://edamontology.org/operation_0268,Protein super-secondary structure prediction, +http://edamontology.org/operation_0269,Transmembrane protein prediction, +http://edamontology.org/operation_0270,Transmembrane protein analysis, +http://edamontology.org/operation_0271,Structure prediction, +http://edamontology.org/operation_0272,Residue contact prediction, +http://edamontology.org/operation_0273,Protein interaction raw data analysis, +http://edamontology.org/operation_0274,Protein-protein interaction prediction (from protein sequence), +http://edamontology.org/operation_0275,Protein-protein interaction prediction (from protein structure), +http://edamontology.org/operation_0276,Protein interaction network analysis, +http://edamontology.org/operation_0277,Pathway or network comparison, +http://edamontology.org/operation_0278,RNA secondary structure prediction, +http://edamontology.org/operation_0279,Nucleic acid folding analysis, +http://edamontology.org/operation_0280,Data retrieval (restriction enzyme annotation), +http://edamontology.org/operation_0281,Genetic marker identification, +http://edamontology.org/operation_0282,Genetic mapping, +http://edamontology.org/operation_0283,Linkage analysis, +http://edamontology.org/operation_0284,Codon usage table generation, +http://edamontology.org/operation_0285,Codon usage table comparison, +http://edamontology.org/operation_0286,Codon usage analysis, +http://edamontology.org/operation_0287,Base position variability plotting, +http://edamontology.org/operation_0288,Sequence word comparison, +http://edamontology.org/operation_0289,Sequence distance matrix generation, +http://edamontology.org/operation_0290,Sequence redundancy removal, +http://edamontology.org/operation_0291,Sequence clustering, +http://edamontology.org/operation_0292,Sequence alignment, +http://edamontology.org/operation_0293,Hybrid sequence alignment construction, +http://edamontology.org/operation_0294,Structure-based sequence alignment, +http://edamontology.org/operation_0295,Structure alignment, +http://edamontology.org/operation_0296,Sequence profile generation, +http://edamontology.org/operation_0297,3D profile generation, +http://edamontology.org/operation_0298,Profile-profile alignment, +http://edamontology.org/operation_0299,3D profile-to-3D profile alignment, +http://edamontology.org/operation_0300,Sequence profile alignment, +http://edamontology.org/operation_0301,Sequence-to-3D-profile alignment, +http://edamontology.org/operation_0302,Protein threading, +http://edamontology.org/operation_0303,Fold recognition, +http://edamontology.org/operation_0304,Metadata retrieval, +http://edamontology.org/operation_0305,Literature search, +http://edamontology.org/operation_0306,Text mining, +http://edamontology.org/operation_0307,Virtual PCR, +http://edamontology.org/operation_0308,PCR primer design, +http://edamontology.org/operation_0309,Microarray probe design, +http://edamontology.org/operation_0310,Sequence assembly, +http://edamontology.org/operation_0311,Microarray data standardisation and normalisation, +http://edamontology.org/operation_0312,Sequencing-based expression profile data processing, +http://edamontology.org/operation_0313,Expression profile clustering, +http://edamontology.org/operation_0314,Gene expression profiling, +http://edamontology.org/operation_0315,Expression profile comparison, +http://edamontology.org/operation_0316,Functional profiling, +http://edamontology.org/operation_0317,EST and cDNA sequence analysis, +http://edamontology.org/operation_0318,Structural genomics target selection, +http://edamontology.org/operation_0319,Protein secondary structure assignment, +http://edamontology.org/operation_0320,Protein structure assignment, +http://edamontology.org/operation_0321,Protein structure validation, +http://edamontology.org/operation_0322,Molecular model refinement, +http://edamontology.org/operation_0323,Phylogenetic inference, +http://edamontology.org/operation_0324,Phylogenetic analysis, +http://edamontology.org/operation_0325,Phylogenetic tree comparison, +http://edamontology.org/operation_0326,Phylogenetic tree editing, +http://edamontology.org/operation_0327,Phylogenetic footprinting, +http://edamontology.org/operation_0328,Protein folding simulation, +http://edamontology.org/operation_0329,Protein folding pathway prediction, +http://edamontology.org/operation_0330,Protein SNP mapping, +http://edamontology.org/operation_0331,Variant effect prediction, +http://edamontology.org/operation_0332,Immunogen design, +http://edamontology.org/operation_0333,Zinc finger prediction, +http://edamontology.org/operation_0334,Enzyme kinetics calculation, +http://edamontology.org/operation_0335,Formatting, +http://edamontology.org/operation_0336,Format validation, +http://edamontology.org/operation_0337,Visualisation, +http://edamontology.org/operation_0338,Sequence database search, +http://edamontology.org/operation_0339,Structure database search, +http://edamontology.org/operation_0340,Protein secondary database search, +http://edamontology.org/operation_0341,Motif database search, +http://edamontology.org/operation_0342,Sequence profile database search, +http://edamontology.org/operation_0343,Transmembrane protein database search, +http://edamontology.org/operation_0344,Sequence retrieval (by code), +http://edamontology.org/operation_0345,Sequence retrieval (by keyword), +http://edamontology.org/operation_0346,Sequence similarity search, +http://edamontology.org/operation_0347,Sequence database search (by motif or pattern), +http://edamontology.org/operation_0348,Sequence database search (by amino acid composition), +http://edamontology.org/operation_0349,Sequence database search (by property), +http://edamontology.org/operation_0350,Sequence database search (by sequence using word-based methods), +http://edamontology.org/operation_0351,Sequence database search (by sequence using profile-based methods), +http://edamontology.org/operation_0352,Sequence database search (by sequence using local alignment-based methods), +http://edamontology.org/operation_0353,Sequence database search (by sequence using global alignment-based methods), +http://edamontology.org/operation_0354,Sequence database search (by sequence for primer sequences), +http://edamontology.org/operation_0355,Sequence database search (by molecular weight), +http://edamontology.org/operation_0356,Sequence database search (by isoelectric point), +http://edamontology.org/operation_0357,Structure retrieval (by code), +http://edamontology.org/operation_0358,Structure retrieval (by keyword), +http://edamontology.org/operation_0359,Structure database search (by sequence), +http://edamontology.org/operation_0360,Structural similarity search, +http://edamontology.org/operation_0361,Sequence annotation, +http://edamontology.org/operation_0362,Genome annotation, +http://edamontology.org/operation_0363,Reverse complement, +http://edamontology.org/operation_0364,Random sequence generation, +http://edamontology.org/operation_0365,Restriction digest, +http://edamontology.org/operation_0366,Protein sequence cleavage, +http://edamontology.org/operation_0367,Sequence mutation and randomisation, +http://edamontology.org/operation_0368,Sequence masking, +http://edamontology.org/operation_0369,Sequence cutting, +http://edamontology.org/operation_0370,Restriction site creation, +http://edamontology.org/operation_0371,DNA translation, +http://edamontology.org/operation_0372,DNA transcription, +http://edamontology.org/operation_0377,Sequence composition calculation (nucleic acid), +http://edamontology.org/operation_0378,Sequence composition calculation (protein), +http://edamontology.org/operation_0379,Repeat sequence detection, +http://edamontology.org/operation_0380,Repeat sequence organisation analysis, +http://edamontology.org/operation_0383,Protein hydropathy calculation (from structure), +http://edamontology.org/operation_0384,Accessible surface calculation, +http://edamontology.org/operation_0385,Protein hydropathy cluster calculation, +http://edamontology.org/operation_0386,Protein dipole moment calculation, +http://edamontology.org/operation_0387,Molecular surface calculation, +http://edamontology.org/operation_0388,Protein binding site prediction (from structure), +http://edamontology.org/operation_0389,Protein-nucleic acid interaction analysis, +http://edamontology.org/operation_0390,Protein peeling, +http://edamontology.org/operation_0391,Protein distance matrix calculation, +http://edamontology.org/operation_0392,Contact map calculation, +http://edamontology.org/operation_0393,Residue cluster calculation, +http://edamontology.org/operation_0394,Hydrogen bond calculation, +http://edamontology.org/operation_0395,Residue non-canonical interaction detection, +http://edamontology.org/operation_0396,Ramachandran plot calculation, +http://edamontology.org/operation_0397,Ramachandran plot validation, +http://edamontology.org/operation_0398,Protein molecular weight calculation, +http://edamontology.org/operation_0399,Protein extinction coefficient calculation, +http://edamontology.org/operation_0400,Protein pKa calculation, +http://edamontology.org/operation_0401,Protein hydropathy calculation (from sequence), +http://edamontology.org/operation_0402,Protein titration curve plotting, +http://edamontology.org/operation_0403,Protein isoelectric point calculation, +http://edamontology.org/operation_0404,Protein hydrogen exchange rate calculation, +http://edamontology.org/operation_0405,Protein hydrophobic region calculation, +http://edamontology.org/operation_0406,Protein aliphatic index calculation, +http://edamontology.org/operation_0407,Protein hydrophobic moment plotting, +http://edamontology.org/operation_0408,Protein globularity prediction, +http://edamontology.org/operation_0409,Protein solubility prediction, +http://edamontology.org/operation_0410,Protein crystallizability prediction, +http://edamontology.org/operation_0411,Protein signal peptide detection (eukaryotes), +http://edamontology.org/operation_0412,Protein signal peptide detection (bacteria), +http://edamontology.org/operation_0413,MHC peptide immunogenicity prediction, +http://edamontology.org/operation_0414,Protein feature prediction (from sequence), +http://edamontology.org/operation_0415,Nucleic acid feature detection, +http://edamontology.org/operation_0416,Epitope mapping, +http://edamontology.org/operation_0417,PTM site prediction, +http://edamontology.org/operation_0418,Protein signal peptide detection, +http://edamontology.org/operation_0419,Protein binding site prediction (from sequence), +http://edamontology.org/operation_0420,Nucleic acids-binding site prediction, +http://edamontology.org/operation_0421,Protein folding site prediction, +http://edamontology.org/operation_0422,Protein cleavage site prediction, +http://edamontology.org/operation_0423,Epitope mapping (MHC Class I), +http://edamontology.org/operation_0424,Epitope mapping (MHC Class II), +http://edamontology.org/operation_0425,Whole gene prediction, +http://edamontology.org/operation_0426,Gene component prediction, +http://edamontology.org/operation_0427,Transposon prediction, +http://edamontology.org/operation_0428,PolyA signal detection, +http://edamontology.org/operation_0429,Quadruplex formation site detection, +http://edamontology.org/operation_0430,CpG island and isochore detection, +http://edamontology.org/operation_0431,Restriction site recognition, +http://edamontology.org/operation_0432,Nucleosome position prediction, +http://edamontology.org/operation_0433,Splice site prediction, +http://edamontology.org/operation_0434,Integrated gene prediction, +http://edamontology.org/operation_0435,Operon prediction, +http://edamontology.org/operation_0436,Coding region prediction, +http://edamontology.org/operation_0437,SECIS element prediction, +http://edamontology.org/operation_0438,Transcriptional regulatory element prediction, +http://edamontology.org/operation_0439,Translation initiation site prediction, +http://edamontology.org/operation_0440,Promoter prediction, +http://edamontology.org/operation_0441,cis-regulatory element prediction, +http://edamontology.org/operation_0442,Transcriptional regulatory element prediction (RNA-cis), +http://edamontology.org/operation_0443,trans-regulatory element prediction, +http://edamontology.org/operation_0444,S/MAR prediction, +http://edamontology.org/operation_0445,Transcription factor binding site prediction, +http://edamontology.org/operation_0446,Exonic splicing enhancer prediction, +http://edamontology.org/operation_0447,Sequence alignment validation, +http://edamontology.org/operation_0448,Sequence alignment analysis (conservation), +http://edamontology.org/operation_0449,Sequence alignment analysis (site correlation), +http://edamontology.org/operation_0450,Chimera detection, +http://edamontology.org/operation_0451,Recombination detection, +http://edamontology.org/operation_0452,Indel detection, +http://edamontology.org/operation_0453,Nucleosome formation potential prediction, +http://edamontology.org/operation_0455,Nucleic acid thermodynamic property calculation, +http://edamontology.org/operation_0456,Nucleic acid melting profile plotting, +http://edamontology.org/operation_0457,Nucleic acid stitch profile plotting, +http://edamontology.org/operation_0458,Nucleic acid melting curve plotting, +http://edamontology.org/operation_0459,Nucleic acid probability profile plotting, +http://edamontology.org/operation_0460,Nucleic acid temperature profile plotting, +http://edamontology.org/operation_0461,Nucleic acid curvature calculation, +http://edamontology.org/operation_0463,miRNA target prediction, +http://edamontology.org/operation_0464,tRNA gene prediction, +http://edamontology.org/operation_0465,siRNA binding specificity prediction, +http://edamontology.org/operation_0467,Protein secondary structure prediction (integrated), +http://edamontology.org/operation_0468,Protein secondary structure prediction (helices), +http://edamontology.org/operation_0469,Protein secondary structure prediction (turns), +http://edamontology.org/operation_0470,Protein secondary structure prediction (coils), +http://edamontology.org/operation_0471,Disulfide bond prediction, +http://edamontology.org/operation_0472,GPCR prediction, +http://edamontology.org/operation_0473,GPCR analysis, +http://edamontology.org/operation_0474,Protein structure prediction, +http://edamontology.org/operation_0475,Nucleic acid structure prediction, +http://edamontology.org/operation_0476,Ab initio structure prediction, +http://edamontology.org/operation_0477,Protein modelling, +http://edamontology.org/operation_0478,Molecular docking, +http://edamontology.org/operation_0479,Backbone modelling, +http://edamontology.org/operation_0480,Side chain modelling, +http://edamontology.org/operation_0481,Loop modelling, +http://edamontology.org/operation_0482,Protein-ligand docking, +http://edamontology.org/operation_0483,RNA inverse folding, +http://edamontology.org/operation_0484,SNP detection, +http://edamontology.org/operation_0485,Radiation Hybrid Mapping, +http://edamontology.org/operation_0486,Functional mapping, +http://edamontology.org/operation_0487,Haplotype mapping, +http://edamontology.org/operation_0488,Linkage disequilibrium calculation, +http://edamontology.org/operation_0489,Genetic code prediction, +http://edamontology.org/operation_0490,Dot plot plotting, +http://edamontology.org/operation_0491,Pairwise sequence alignment, +http://edamontology.org/operation_0492,Multiple sequence alignment, +http://edamontology.org/operation_0493,Pairwise sequence alignment generation (local), +http://edamontology.org/operation_0494,Pairwise sequence alignment generation (global), +http://edamontology.org/operation_0495,Local alignment, +http://edamontology.org/operation_0496,Global alignment, +http://edamontology.org/operation_0497,Constrained sequence alignment, +http://edamontology.org/operation_0498,Consensus-based sequence alignment, +http://edamontology.org/operation_0499,Tree-based sequence alignment, +http://edamontology.org/operation_0500,Secondary structure alignment generation, +http://edamontology.org/operation_0501,Protein secondary structure alignment generation, +http://edamontology.org/operation_0502,RNA secondary structure alignment, +http://edamontology.org/operation_0503,Pairwise structure alignment, +http://edamontology.org/operation_0504,Multiple structure alignment, +http://edamontology.org/operation_0505,Structure alignment (protein), +http://edamontology.org/operation_0506,Structure alignment (RNA), +http://edamontology.org/operation_0507,Pairwise structure alignment generation (local), +http://edamontology.org/operation_0508,Pairwise structure alignment generation (global), +http://edamontology.org/operation_0509,Local structure alignment, +http://edamontology.org/operation_0510,Global structure alignment, +http://edamontology.org/operation_0511,Profile-profile alignment (pairwise), +http://edamontology.org/operation_0512,Sequence alignment generation (multiple profile), +http://edamontology.org/operation_0513,3D profile-to-3D profile alignment (pairwise), +http://edamontology.org/operation_0514,Structural profile alignment generation (multiple), +http://edamontology.org/operation_0515,Data retrieval (tool metadata), +http://edamontology.org/operation_0516,Data retrieval (database metadata), +http://edamontology.org/operation_0517,PCR primer design (for large scale sequencing), +http://edamontology.org/operation_0518,PCR primer design (for genotyping polymorphisms), +http://edamontology.org/operation_0519,PCR primer design (for gene transcription profiling), +http://edamontology.org/operation_0520,PCR primer design (for conserved primers), +http://edamontology.org/operation_0521,PCR primer design (based on gene structure), +http://edamontology.org/operation_0522,PCR primer design (for methylation PCRs), +http://edamontology.org/operation_0523,Mapping assembly, +http://edamontology.org/operation_0524,De-novo assembly, +http://edamontology.org/operation_0525,Genome assembly, +http://edamontology.org/operation_0526,EST assembly, +http://edamontology.org/operation_0527,Sequence tag mapping, +http://edamontology.org/operation_0528,SAGE data processing, +http://edamontology.org/operation_0529,MPSS data processing, +http://edamontology.org/operation_0530,SBS data processing, +http://edamontology.org/operation_0531,Heat map generation, +http://edamontology.org/operation_0532,Gene expression profile analysis, +http://edamontology.org/operation_0533,Expression profile pathway mapping, +http://edamontology.org/operation_0534,Protein secondary structure assignment (from coordinate data), +http://edamontology.org/operation_0535,Protein secondary structure assignment (from CD data), +http://edamontology.org/operation_0536,Protein structure assignment (from X-ray crystallographic data), +http://edamontology.org/operation_0537,Protein structure assignment (from NMR data), +http://edamontology.org/operation_0538,Phylogenetic inference (data centric), +http://edamontology.org/operation_0539,Phylogenetic inference (method centric), +http://edamontology.org/operation_0540,Phylogenetic inference (from molecular sequences), +http://edamontology.org/operation_0541,Phylogenetic inference (from continuous quantitative characters), +http://edamontology.org/operation_0542,Phylogenetic inference (from gene frequencies), +http://edamontology.org/operation_0543,Phylogenetic inference (from polymorphism data), +http://edamontology.org/operation_0544,Species tree construction, +http://edamontology.org/operation_0545,Phylogenetic inference (parsimony methods), +http://edamontology.org/operation_0546,Phylogenetic inference (minimum distance methods), +http://edamontology.org/operation_0547,Phylogenetic inference (maximum likelihood and Bayesian methods), +http://edamontology.org/operation_0548,Phylogenetic inference (quartet methods), +http://edamontology.org/operation_0549,Phylogenetic inference (AI methods), +http://edamontology.org/operation_0550,DNA substitution modelling, +http://edamontology.org/operation_0551,Phylogenetic tree topology analysis, +http://edamontology.org/operation_0552,Phylogenetic tree bootstrapping, +http://edamontology.org/operation_0553,Gene tree construction, +http://edamontology.org/operation_0554,Allele frequency distribution analysis, +http://edamontology.org/operation_0555,Consensus tree construction, +http://edamontology.org/operation_0556,Phylogenetic sub/super tree construction, +http://edamontology.org/operation_0557,Phylogenetic tree distances calculation, +http://edamontology.org/operation_0558,Phylogenetic tree annotation, +http://edamontology.org/operation_0559,Immunogenicity prediction, +http://edamontology.org/operation_0560,DNA vaccine design, +http://edamontology.org/operation_0561,Sequence formatting, +http://edamontology.org/operation_0562,Sequence alignment formatting, +http://edamontology.org/operation_0563,Codon usage table formatting, +http://edamontology.org/operation_0564,Sequence visualisation, +http://edamontology.org/operation_0565,Sequence alignment visualisation, +http://edamontology.org/operation_0566,Sequence cluster visualisation, +http://edamontology.org/operation_0567,Phylogenetic tree visualisation, +http://edamontology.org/operation_0568,RNA secondary structure visualisation, +http://edamontology.org/operation_0569,Protein secondary structure visualisation, +http://edamontology.org/operation_0570,Structure visualisation, +http://edamontology.org/operation_0571,Expression data visualisation, +http://edamontology.org/operation_0572,Protein interaction network visualisation, +http://edamontology.org/operation_0573,Map drawing, +http://edamontology.org/operation_0574,Sequence motif rendering, +http://edamontology.org/operation_0575,Restriction map drawing, +http://edamontology.org/operation_0577,DNA linear map rendering, +http://edamontology.org/operation_0578,Plasmid map drawing, +http://edamontology.org/operation_0579,Operon drawing, +http://edamontology.org/operation_1768,Nucleic acid folding family identification, +http://edamontology.org/operation_1769,Nucleic acid folding energy calculation, +http://edamontology.org/operation_1774,Annotation retrieval, +http://edamontology.org/operation_1777,Protein function prediction, +http://edamontology.org/operation_1778,Protein function comparison, +http://edamontology.org/operation_1780,Sequence submission, +http://edamontology.org/operation_1781,Gene regulatory network analysis, +http://edamontology.org/operation_1812,Parsing, +http://edamontology.org/operation_1813,Sequence retrieval, +http://edamontology.org/operation_1814,Structure retrieval, +http://edamontology.org/operation_1816,Surface rendering, +http://edamontology.org/operation_1817,Protein atom surface calculation (accessible), +http://edamontology.org/operation_1818,Protein atom surface calculation (accessible molecular), +http://edamontology.org/operation_1819,Protein residue surface calculation (accessible), +http://edamontology.org/operation_1820,Protein residue surface calculation (vacuum accessible), +http://edamontology.org/operation_1821,Protein residue surface calculation (accessible molecular), +http://edamontology.org/operation_1822,Protein residue surface calculation (vacuum molecular), +http://edamontology.org/operation_1823,Protein surface calculation (accessible molecular), +http://edamontology.org/operation_1824,Protein surface calculation (accessible), +http://edamontology.org/operation_1825,Backbone torsion angle calculation, +http://edamontology.org/operation_1826,Full torsion angle calculation, +http://edamontology.org/operation_1827,Cysteine torsion angle calculation, +http://edamontology.org/operation_1828,Tau angle calculation, +http://edamontology.org/operation_1829,Cysteine bridge detection, +http://edamontology.org/operation_1830,Free cysteine detection, +http://edamontology.org/operation_1831,Metal-bound cysteine detection, +http://edamontology.org/operation_1832,Residue contact calculation (residue-nucleic acid), +http://edamontology.org/operation_1834,Protein-metal contact calculation, +http://edamontology.org/operation_1835,Residue contact calculation (residue-negative ion), +http://edamontology.org/operation_1836,Residue bump detection, +http://edamontology.org/operation_1837,Residue symmetry contact calculation, +http://edamontology.org/operation_1838,Residue contact calculation (residue-ligand), +http://edamontology.org/operation_1839,Salt bridge calculation, +http://edamontology.org/operation_1841,Rotamer likelihood prediction, +http://edamontology.org/operation_1842,Proline mutation value calculation, +http://edamontology.org/operation_1843,Residue packing validation, +http://edamontology.org/operation_1844,Protein geometry validation, +http://edamontology.org/operation_1845,PDB file sequence retrieval, +http://edamontology.org/operation_1846,HET group detection, +http://edamontology.org/operation_1847,DSSP secondary structure assignment, +http://edamontology.org/operation_1848,Structure formatting, +http://edamontology.org/operation_1850,Protein cysteine and disulfide bond assignment, +http://edamontology.org/operation_1913,Residue validation, +http://edamontology.org/operation_1914,Structure retrieval (water), +http://edamontology.org/operation_2008,siRNA duplex prediction, +http://edamontology.org/operation_2089,Sequence alignment refinement, +http://edamontology.org/operation_2120,Listfile processing, +http://edamontology.org/operation_2121,Sequence file editing, +http://edamontology.org/operation_2122,Sequence alignment file processing, +http://edamontology.org/operation_2123,Small molecule data processing, +http://edamontology.org/operation_2222,Data retrieval (ontology annotation), +http://edamontology.org/operation_2224,Data retrieval (ontology concept), +http://edamontology.org/operation_2233,Representative sequence identification, +http://edamontology.org/operation_2234,Structure file processing, +http://edamontology.org/operation_2237,Data retrieval (sequence profile), +http://edamontology.org/operation_2238,Statistical calculation, +http://edamontology.org/operation_2239,3D-1D scoring matrix generation, +http://edamontology.org/operation_2241,Transmembrane protein visualisation, +http://edamontology.org/operation_2246,Demonstration, +http://edamontology.org/operation_2264,Data retrieval (pathway or network), +http://edamontology.org/operation_2265,Data retrieval (identifier), +http://edamontology.org/operation_2284,Nucleic acid density plotting, +http://edamontology.org/operation_2403,Sequence analysis, +http://edamontology.org/operation_2404,Sequence motif analysis, +http://edamontology.org/operation_2405,Protein interaction data processing, +http://edamontology.org/operation_2406,Protein structure analysis, +http://edamontology.org/operation_2407,Annotation processing, +http://edamontology.org/operation_2408,Sequence feature analysis, +http://edamontology.org/operation_2409,Data handling, +http://edamontology.org/operation_2410,Gene expression analysis, +http://edamontology.org/operation_2411,Structural profile processing, +http://edamontology.org/operation_2412,Data index processing, +http://edamontology.org/operation_2413,Sequence profile processing, +http://edamontology.org/operation_2414,Protein function analysis, +http://edamontology.org/operation_2415,Protein folding analysis, +http://edamontology.org/operation_2416,Protein secondary structure analysis, +http://edamontology.org/operation_2417,Physicochemical property data processing, +http://edamontology.org/operation_2419,Primer and probe design, +http://edamontology.org/operation_2420,Operation (typed), +http://edamontology.org/operation_2421,Database search, +http://edamontology.org/operation_2422,Data retrieval, +http://edamontology.org/operation_2423,Prediction and recognition, +http://edamontology.org/operation_2424,Comparison, +http://edamontology.org/operation_2425,Optimisation and refinement, +http://edamontology.org/operation_2426,Modelling and simulation, +http://edamontology.org/operation_2427,Data handling, +http://edamontology.org/operation_2428,Validation, +http://edamontology.org/operation_2429,Mapping, +http://edamontology.org/operation_2430,Design, +http://edamontology.org/operation_2432,Microarray data processing, +http://edamontology.org/operation_2433,Codon usage table processing, +http://edamontology.org/operation_2434,Data retrieval (codon usage table), +http://edamontology.org/operation_2435,Gene expression profile processing, +http://edamontology.org/operation_2436,Gene-set enrichment analysis, +http://edamontology.org/operation_2437,Gene regulatory network prediction, +http://edamontology.org/operation_2438,Pathway or network processing, +http://edamontology.org/operation_2439,RNA secondary structure analysis, +http://edamontology.org/operation_2440,Structure processing (RNA), +http://edamontology.org/operation_2441,RNA structure prediction, +http://edamontology.org/operation_2442,DNA structure prediction, +http://edamontology.org/operation_2443,Phylogenetic tree processing, +http://edamontology.org/operation_2444,Protein secondary structure processing, +http://edamontology.org/operation_2445,Protein interaction network processing, +http://edamontology.org/operation_2446,Sequence processing, +http://edamontology.org/operation_2447,Sequence processing (protein), +http://edamontology.org/operation_2448,Sequence processing (nucleic acid), +http://edamontology.org/operation_2451,Sequence comparison, +http://edamontology.org/operation_2452,Sequence cluster processing, +http://edamontology.org/operation_2453,Feature table processing, +http://edamontology.org/operation_2454,Gene prediction, +http://edamontology.org/operation_2456,GPCR classification, +http://edamontology.org/operation_2457,GPCR coupling selectivity prediction, +http://edamontology.org/operation_2459,Structure processing (protein), +http://edamontology.org/operation_2460,Protein atom surface calculation, +http://edamontology.org/operation_2461,Protein residue surface calculation, +http://edamontology.org/operation_2462,Protein surface calculation, +http://edamontology.org/operation_2463,Sequence alignment processing, +http://edamontology.org/operation_2464,Protein-protein binding site prediction, +http://edamontology.org/operation_2465,Structure processing, +http://edamontology.org/operation_2466,Map annotation, +http://edamontology.org/operation_2467,Data retrieval (protein annotation), +http://edamontology.org/operation_2468,Data retrieval (phylogenetic tree), +http://edamontology.org/operation_2469,Data retrieval (protein interaction annotation), +http://edamontology.org/operation_2470,Data retrieval (protein family annotation), +http://edamontology.org/operation_2471,Data retrieval (RNA family annotation), +http://edamontology.org/operation_2472,Data retrieval (gene annotation), +http://edamontology.org/operation_2473,Data retrieval (genotype and phenotype annotation), +http://edamontology.org/operation_2474,Protein architecture comparison, +http://edamontology.org/operation_2475,Protein architecture recognition, +http://edamontology.org/operation_2476,Molecular dynamics, +http://edamontology.org/operation_2478,Nucleic acid sequence analysis, +http://edamontology.org/operation_2479,Protein sequence analysis, +http://edamontology.org/operation_2480,Structure analysis, +http://edamontology.org/operation_2481,Nucleic acid structure analysis, +http://edamontology.org/operation_2482,Secondary structure processing, +http://edamontology.org/operation_2483,Structure comparison, +http://edamontology.org/operation_2485,Helical wheel drawing, +http://edamontology.org/operation_2486,Topology diagram drawing, +http://edamontology.org/operation_2487,Protein structure comparison, +http://edamontology.org/operation_2488,Protein secondary structure comparison, +http://edamontology.org/operation_2489,Subcellular localisation prediction, +http://edamontology.org/operation_2490,Residue contact calculation (residue-residue), +http://edamontology.org/operation_2491,Hydrogen bond calculation (inter-residue), +http://edamontology.org/operation_2492,Protein interaction prediction, +http://edamontology.org/operation_2493,Codon usage data processing, +http://edamontology.org/operation_2495,Expression analysis, +http://edamontology.org/operation_2496,Gene regulatory network processing, +http://edamontology.org/operation_2497,Pathway or network analysis, +http://edamontology.org/operation_2498,Sequencing-based expression profile data analysis, +http://edamontology.org/operation_2499,Splicing analysis, +http://edamontology.org/operation_2500,Microarray raw data analysis, +http://edamontology.org/operation_2501,Nucleic acid analysis, +http://edamontology.org/operation_2502,Protein analysis, +http://edamontology.org/operation_2503,Sequence data processing, +http://edamontology.org/operation_2504,Structural data processing, +http://edamontology.org/operation_2505,Text processing, +http://edamontology.org/operation_2506,Protein sequence alignment analysis, +http://edamontology.org/operation_2507,Nucleic acid sequence alignment analysis, +http://edamontology.org/operation_2508,Nucleic acid sequence comparison, +http://edamontology.org/operation_2509,Protein sequence comparison, +http://edamontology.org/operation_2510,DNA back-translation, +http://edamontology.org/operation_2511,Sequence editing (nucleic acid), +http://edamontology.org/operation_2512,Sequence editing (protein), +http://edamontology.org/operation_2513,Sequence generation (nucleic acid), +http://edamontology.org/operation_2514,Sequence generation (protein), +http://edamontology.org/operation_2515,Nucleic acid sequence visualisation, +http://edamontology.org/operation_2516,Protein sequence visualisation, +http://edamontology.org/operation_2518,Nucleic acid structure comparison, +http://edamontology.org/operation_2519,Structure processing (nucleic acid), +http://edamontology.org/operation_2520,DNA mapping, +http://edamontology.org/operation_2521,Map data processing, +http://edamontology.org/operation_2574,Protein hydropathy calculation, +http://edamontology.org/operation_2575,Binding site prediction, +http://edamontology.org/operation_2844,Structure clustering, +http://edamontology.org/operation_2871,Sequence tagged site (STS) mapping, +http://edamontology.org/operation_2928,Alignment, +http://edamontology.org/operation_2929,Protein fragment weight comparison, +http://edamontology.org/operation_2930,Protein property comparison, +http://edamontology.org/operation_2931,Secondary structure comparison, +http://edamontology.org/operation_2932,Hopp and Woods plotting, +http://edamontology.org/operation_2934,Cluster textual view generation, +http://edamontology.org/operation_2935,Clustering profile plotting, +http://edamontology.org/operation_2936,Dendrograph plotting, +http://edamontology.org/operation_2937,Proximity map plotting, +http://edamontology.org/operation_2938,Dendrogram visualisation, +http://edamontology.org/operation_2939,Principal component visualisation, +http://edamontology.org/operation_2940,Scatter plot plotting, +http://edamontology.org/operation_2941,Whole microarray graph plotting, +http://edamontology.org/operation_2942,Treemap visualisation, +http://edamontology.org/operation_2943,Box-Whisker plot plotting, +http://edamontology.org/operation_2944,Physical mapping, +http://edamontology.org/operation_2945,Analysis, +http://edamontology.org/operation_2946,Alignment analysis, +http://edamontology.org/operation_2947,Article analysis, +http://edamontology.org/operation_2948,Molecular interaction analysis, +http://edamontology.org/operation_2949,Protein-protein interaction analysis, +http://edamontology.org/operation_2950,Residue distance calculation, +http://edamontology.org/operation_2951,Alignment processing, +http://edamontology.org/operation_2952,Structure alignment processing, +http://edamontology.org/operation_2962,Codon usage bias calculation, +http://edamontology.org/operation_2963,Codon usage bias plotting, +http://edamontology.org/operation_2964,Codon usage fraction calculation, +http://edamontology.org/operation_2990,Classification, +http://edamontology.org/operation_2993,Molecular interaction data processing, +http://edamontology.org/operation_2995,Sequence classification, +http://edamontology.org/operation_2996,Structure classification, +http://edamontology.org/operation_2997,Protein comparison, +http://edamontology.org/operation_2998,Nucleic acid comparison, +http://edamontology.org/operation_3023,Prediction and recognition (protein), +http://edamontology.org/operation_3024,Prediction and recognition (nucleic acid), +http://edamontology.org/operation_3080,Structure editing, +http://edamontology.org/operation_3081,Sequence alignment editing, +http://edamontology.org/operation_3083,Pathway or network visualisation, +http://edamontology.org/operation_3084,Protein function prediction (from sequence), +http://edamontology.org/operation_3087,Protein sequence feature detection, +http://edamontology.org/operation_3088,Protein property calculation (from sequence), +http://edamontology.org/operation_3090,Protein feature prediction (from structure), +http://edamontology.org/operation_3092,Protein feature detection, +http://edamontology.org/operation_3093,Database search (by sequence), +http://edamontology.org/operation_3094,Protein interaction network prediction, +http://edamontology.org/operation_3095,Nucleic acid design, +http://edamontology.org/operation_3096,Editing, +http://edamontology.org/operation_3180,Sequence assembly validation, +http://edamontology.org/operation_3182,Genome alignment, +http://edamontology.org/operation_3183,Localised reassembly, +http://edamontology.org/operation_3184,Sequence assembly visualisation, +http://edamontology.org/operation_3185,Base-calling, +http://edamontology.org/operation_3186,Bisulfite mapping, +http://edamontology.org/operation_3187,Sequence contamination filtering, +http://edamontology.org/operation_3189,Trim ends, +http://edamontology.org/operation_3190,Trim vector, +http://edamontology.org/operation_3191,Trim to reference, +http://edamontology.org/operation_3192,Sequence trimming, +http://edamontology.org/operation_3194,Genome feature comparison, +http://edamontology.org/operation_3195,Sequencing error detection, +http://edamontology.org/operation_3196,Genotyping, +http://edamontology.org/operation_3197,Genetic variation analysis, +http://edamontology.org/operation_3198,Read mapping, +http://edamontology.org/operation_3199,Split read mapping, +http://edamontology.org/operation_3200,DNA barcoding, +http://edamontology.org/operation_3201,SNP calling, +http://edamontology.org/operation_3202,Polymorphism detection, +http://edamontology.org/operation_3203,Chromatogram visualisation, +http://edamontology.org/operation_3204,Methylation analysis, +http://edamontology.org/operation_3205,Methylation calling, +http://edamontology.org/operation_3206,Whole genome methylation analysis, +http://edamontology.org/operation_3207,Gene methylation analysis, +http://edamontology.org/operation_3208,Genome visualisation, +http://edamontology.org/operation_3209,Genome comparison, +http://edamontology.org/operation_3211,Genome indexing, +http://edamontology.org/operation_3212,Genome indexing (Burrows-Wheeler), +http://edamontology.org/operation_3213,Genome indexing (suffix arrays), +http://edamontology.org/operation_3214,Spectral analysis, +http://edamontology.org/operation_3215,Peak detection, +http://edamontology.org/operation_3216,Scaffolding, +http://edamontology.org/operation_3217,Scaffold gap completion, +http://edamontology.org/operation_3218,Sequencing quality control, +http://edamontology.org/operation_3219,Read pre-processing, +http://edamontology.org/operation_3221,Species frequency estimation, +http://edamontology.org/operation_3222,Peak calling, +http://edamontology.org/operation_3223,Differential gene expression profiling, +http://edamontology.org/operation_3224,Gene set testing, +http://edamontology.org/operation_3225,Variant classification, +http://edamontology.org/operation_3226,Variant prioritisation, +http://edamontology.org/operation_3227,Variant calling, +http://edamontology.org/operation_3228,Structural variation detection, +http://edamontology.org/operation_3229,Exome assembly, +http://edamontology.org/operation_3230,Read depth analysis, +http://edamontology.org/operation_3232,Gene expression QTL analysis, +http://edamontology.org/operation_3233,Copy number estimation, +http://edamontology.org/operation_3237,Primer removal, +http://edamontology.org/operation_3258,Transcriptome assembly, +http://edamontology.org/operation_3259,Transcriptome assembly (de novo), +http://edamontology.org/operation_3260,Transcriptome assembly (mapping), +http://edamontology.org/operation_3267,Sequence coordinate conversion, +http://edamontology.org/operation_3278,Document similarity calculation, +http://edamontology.org/operation_3279,Document clustering, +http://edamontology.org/operation_3280,Named-entity and concept recognition, +http://edamontology.org/operation_3282,ID mapping, +http://edamontology.org/operation_3283,Anonymisation, +http://edamontology.org/operation_3289,ID retrieval, +http://edamontology.org/operation_3348,Sequence checksum generation, +http://edamontology.org/operation_3349,Bibliography generation, +http://edamontology.org/operation_3350,Protein quaternary structure prediction, +http://edamontology.org/operation_3351,Molecular surface analysis, +http://edamontology.org/operation_3352,Ontology comparison, +http://edamontology.org/operation_3353,Ontology comparison, +http://edamontology.org/operation_3357,Format detection, +http://edamontology.org/operation_3359,Splitting, +http://edamontology.org/operation_3429,Generation, +http://edamontology.org/operation_3430,Nucleic acid sequence feature detection, +http://edamontology.org/operation_3431,Deposition, +http://edamontology.org/operation_3432,Clustering, +http://edamontology.org/operation_3433,Assembly, +http://edamontology.org/operation_3434,Conversion, +http://edamontology.org/operation_3435,Standardisation and normalisation, +http://edamontology.org/operation_3436,Aggregation, +http://edamontology.org/operation_3437,Article comparison, +http://edamontology.org/operation_3438,Calculation, +http://edamontology.org/operation_3439,Pathway or network prediction, +http://edamontology.org/operation_3440,Genome assembly, +http://edamontology.org/operation_3441,Plotting, +http://edamontology.org/operation_3443,Image analysis, +http://edamontology.org/operation_3445,Diffraction data analysis, +http://edamontology.org/operation_3446,Cell migration analysis, +http://edamontology.org/operation_3447,Diffraction data reduction, +http://edamontology.org/operation_3450,Neurite measurement, +http://edamontology.org/operation_3453,Diffraction data integration, +http://edamontology.org/operation_3454,Phasing, +http://edamontology.org/operation_3455,Molecular replacement, +http://edamontology.org/operation_3456,Rigid body refinement, +http://edamontology.org/operation_3457,Single particle analysis, +http://edamontology.org/operation_3458,Single particle alignment and classification, +http://edamontology.org/operation_3459,Functional clustering, +http://edamontology.org/operation_3460,Taxonomic classification, +http://edamontology.org/operation_3461,Virulence prediction, +http://edamontology.org/operation_3463,Expression correlation analysis, +http://edamontology.org/operation_3465,Correlation, +http://edamontology.org/operation_3469,RNA structure covariance model generation, +http://edamontology.org/operation_3470,RNA secondary structure prediction (shape-based), +http://edamontology.org/operation_3471,Nucleic acid folding prediction (alignment-based), +http://edamontology.org/operation_3472,k-mer counting, +http://edamontology.org/operation_3478,Phylogenetic reconstruction, +http://edamontology.org/operation_3480,Probabilistic data generation, +http://edamontology.org/operation_3481,Probabilistic sequence generation, +http://edamontology.org/operation_3482,Antimicrobial resistance prediction, +http://edamontology.org/operation_3501,Enrichment analysis, +http://edamontology.org/operation_3502,Chemical similarity enrichment, +http://edamontology.org/operation_3503,Incident curve plotting, +http://edamontology.org/operation_3504,Variant pattern analysis, +http://edamontology.org/operation_3545,Mathematical modelling, +http://edamontology.org/operation_3552,Microscope image visualisation, +http://edamontology.org/operation_3553,Image annotation, +http://edamontology.org/operation_3557,Imputation, +http://edamontology.org/operation_3559,Ontology visualisation, +http://edamontology.org/operation_3560,Maximum occurence analysis, +http://edamontology.org/operation_3561,Database comparison, +http://edamontology.org/operation_3562,Network simulation, +http://edamontology.org/operation_3563,RNA-seq read count analysis, +http://edamontology.org/operation_3564,Chemical redundancy removal, +http://edamontology.org/operation_3565,RNA-seq time series data analysis, +http://edamontology.org/operation_3566,Simulated gene expression data generation, +http://edamontology.org/operation_3625,Relation extraction, +http://edamontology.org/operation_3627,Mass spectra calibration, +http://edamontology.org/operation_3628,Chromatographic alignment, +http://edamontology.org/operation_3629,Deisotoping, +http://edamontology.org/operation_3630,Protein quantification, +http://edamontology.org/operation_3631,Peptide identification, +http://edamontology.org/operation_3632,Isotopic distributions calculation, +http://edamontology.org/operation_3633,Retention time prediction, +http://edamontology.org/operation_3634,Label-free quantification, +http://edamontology.org/operation_3635,Labeled quantification, +http://edamontology.org/operation_3636,MRM/SRM, +http://edamontology.org/operation_3637,Spectral counting, +http://edamontology.org/operation_3638,SILAC, +http://edamontology.org/operation_3639,iTRAQ, +http://edamontology.org/operation_3640,18O labeling, +http://edamontology.org/operation_3641,TMT-tag, +http://edamontology.org/operation_3642,Dimethyl, +http://edamontology.org/operation_3643,Tag-based peptide identification, +http://edamontology.org/operation_3644,de Novo sequencing, +http://edamontology.org/operation_3645,PTM identification, +http://edamontology.org/operation_3646,Peptide database search, +http://edamontology.org/operation_3647,Blind peptide database search, +http://edamontology.org/operation_3648,Validation of peptide-spectrum matches, +http://edamontology.org/operation_3649,Target-Decoy, +http://edamontology.org/operation_3658,Statistical inference, +http://edamontology.org/operation_3659,Regression analysis, +http://edamontology.org/operation_3660,Metabolic network modelling, +http://edamontology.org/operation_3661,SNP annotation, +http://edamontology.org/operation_3662,Ab-initio gene prediction, +http://edamontology.org/operation_3663,Homology-based gene prediction, +http://edamontology.org/operation_3664,Statistical modelling, +http://edamontology.org/operation_3666,Molecular surface comparison, +http://edamontology.org/operation_3672,Gene functional annotation, +http://edamontology.org/operation_3675,Variant filtering, +http://edamontology.org/operation_3677,Differential binding analysis, +http://edamontology.org/operation_3680,RNA-Seq analysis, +http://edamontology.org/operation_3694,Mass spectrum visualisation, +http://edamontology.org/operation_3695,Filtering, +http://edamontology.org/operation_3703,Reference identification, +http://edamontology.org/operation_3704,Ion counting, +http://edamontology.org/operation_3705,Isotope-coded protein label, +http://edamontology.org/operation_3715,Metabolic labeling, +http://edamontology.org/operation_3730,Cross-assembly, +http://edamontology.org/operation_3731,Sample comparison, +http://edamontology.org/operation_3741,Differential protein expression profiling, +http://edamontology.org/operation_3742,Differential gene expression analysis, +http://edamontology.org/operation_3744,Multiple sample visualisation, +http://edamontology.org/operation_3745,Ancestral reconstruction, +http://edamontology.org/operation_3755,PTM localisation, +http://edamontology.org/operation_3760,Service management, +http://edamontology.org/operation_3761,Service discovery, +http://edamontology.org/operation_3762,Service composition, +http://edamontology.org/operation_3763,Service invocation, +http://edamontology.org/operation_3766,Weighted correlation network analysis, +http://edamontology.org/operation_3767,Protein identification, +http://edamontology.org/operation_3778,Text annotation, +http://edamontology.org/operation_3791,Collapsing methods, +http://edamontology.org/operation_3792,miRNA expression analysis, +http://edamontology.org/operation_3793,Read summarisation, +http://edamontology.org/operation_3795,In vitro selection, +http://edamontology.org/operation_3797,Rarefaction, +http://edamontology.org/operation_3798,Read binning, +http://edamontology.org/operation_3799,Quantification, +http://edamontology.org/operation_3800,RNA-Seq quantification, +http://edamontology.org/operation_3801,Spectral library search, +http://edamontology.org/operation_3802,Sorting, +http://edamontology.org/operation_3803,Natural product identification, +http://edamontology.org/operation_3809,DMR identification, +http://edamontology.org/operation_3840,Multilocus sequence typing, +http://edamontology.org/operation_3860,Spectrum calculation, +http://edamontology.org/operation_3890,Trajectory visualization, +http://edamontology.org/operation_3891,Essential dynamics, +http://edamontology.org/operation_3893,Forcefield parameterisation, +http://edamontology.org/operation_3894,DNA profiling, +http://edamontology.org/operation_3896,Active site prediction, +http://edamontology.org/operation_3897,Ligand-binding site prediction, +http://edamontology.org/operation_3898,Metal-binding site prediction, +http://edamontology.org/operation_3899,Protein-protein docking, +http://edamontology.org/operation_3900,DNA-binding protein prediction, +http://edamontology.org/operation_3901,RNA-binding protein prediction, +http://edamontology.org/operation_3902,RNA binding site prediction, +http://edamontology.org/operation_3903,DNA binding site prediction, +http://edamontology.org/operation_3904,Protein disorder prediction, +http://edamontology.org/operation_3907,Information extraction, +http://edamontology.org/operation_3908,Information retrieval, +http://edamontology.org/operation_3918,Genome analysis, +http://edamontology.org/operation_3919,Methylation calling, +http://edamontology.org/operation_3920,DNA testing, +http://edamontology.org/operation_3921,Sequence read processing, +http://edamontology.org/operation_3923,Genome resequencing, +http://edamontology.org/operation_3925,Network visualisation, +http://edamontology.org/operation_3926,Pathway visualisation, +http://edamontology.org/operation_3927,Network analysis, +http://edamontology.org/operation_3928,Pathway analysis, +http://edamontology.org/operation_3929,Metabolic pathway prediction, +http://edamontology.org/operation_3931,Chemometrics, +http://edamontology.org/operation_3933,Demultiplexing, +http://edamontology.org/operation_3935,Dimensionality reduction, +http://edamontology.org/operation_3936,Feature selection, +http://edamontology.org/operation_3937,Feature extraction, +http://edamontology.org/operation_3938,Virtual screening, +http://edamontology.org/operation_3939,Metabolic engineering, +http://edamontology.org/operation_3942,Tree dating, +http://edamontology.org/operation_3946,Ecological modelling, +http://edamontology.org/operation_3947,Phylogenetic tree reconciliation, +http://edamontology.org/operation_3950,Selection detection, +http://edamontology.org/operation_3960,Principal component analysis, +http://edamontology.org/operation_3961,Copy number variation detection, +http://edamontology.org/operation_3962,Deletion detection, +http://edamontology.org/operation_3963,Duplication detection, +http://edamontology.org/operation_3964,Complex CNV detection, +http://edamontology.org/operation_3965,Amplification detection, +http://edamontology.org/operation_3968,Adhesin prediction, +http://edamontology.org/operation_4008,Protein design, +http://edamontology.org/operation_4009,Small molecule design, +http://edamontology.org/topic_0003,Topic, +http://edamontology.org/topic_0077,Nucleic acids, +http://edamontology.org/topic_0078,Proteins, +http://edamontology.org/topic_0079,Metabolites, +http://edamontology.org/topic_0080,Sequence analysis, +http://edamontology.org/topic_0081,Structure analysis, +http://edamontology.org/topic_0082,Structure prediction, +http://edamontology.org/topic_0083,Alignment, +http://edamontology.org/topic_0084,Phylogeny, +http://edamontology.org/topic_0085,Functional genomics, +http://edamontology.org/topic_0089,Ontology and terminology, +http://edamontology.org/topic_0090,Information retrieval, +http://edamontology.org/topic_0091,Bioinformatics, +http://edamontology.org/topic_0092,Data visualisation, +http://edamontology.org/topic_0094,Nucleic acid thermodynamics, +http://edamontology.org/topic_0097,Nucleic acid structure analysis, +http://edamontology.org/topic_0099,RNA, +http://edamontology.org/topic_0100,Nucleic acid restriction, +http://edamontology.org/topic_0102,Mapping, +http://edamontology.org/topic_0107,Genetic codes and codon usage, +http://edamontology.org/topic_0108,Protein expression, +http://edamontology.org/topic_0109,Gene finding, +http://edamontology.org/topic_0110,Transcription, +http://edamontology.org/topic_0111,Promoters, +http://edamontology.org/topic_0112,Nucleic acid folding, +http://edamontology.org/topic_0114,Gene structure, +http://edamontology.org/topic_0121,Proteomics, +http://edamontology.org/topic_0122,Structural genomics, +http://edamontology.org/topic_0123,Protein properties, +http://edamontology.org/topic_0128,Protein interactions, +http://edamontology.org/topic_0130,"Protein folding, stability and design", +http://edamontology.org/topic_0133,Two-dimensional gel electrophoresis, +http://edamontology.org/topic_0134,Mass spectrometry, +http://edamontology.org/topic_0135,Protein microarrays, +http://edamontology.org/topic_0137,Protein hydropathy, +http://edamontology.org/topic_0140,Protein targeting and localisation, +http://edamontology.org/topic_0141,Protein cleavage sites and proteolysis, +http://edamontology.org/topic_0143,Protein structure comparison, +http://edamontology.org/topic_0144,Protein residue interactions, +http://edamontology.org/topic_0147,Protein-protein interactions, +http://edamontology.org/topic_0148,Protein-ligand interactions, +http://edamontology.org/topic_0149,Protein-nucleic acid interactions, +http://edamontology.org/topic_0150,Protein design, +http://edamontology.org/topic_0151,G protein-coupled receptors (GPCR), +http://edamontology.org/topic_0152,Carbohydrates, +http://edamontology.org/topic_0153,Lipids, +http://edamontology.org/topic_0154,Small molecules, +http://edamontology.org/topic_0156,Sequence editing, +http://edamontology.org/topic_0157,"Sequence composition, complexity and repeats", +http://edamontology.org/topic_0158,Sequence motifs, +http://edamontology.org/topic_0159,Sequence comparison, +http://edamontology.org/topic_0160,"Sequence sites, features and motifs", +http://edamontology.org/topic_0163,Sequence database search, +http://edamontology.org/topic_0164,Sequence clustering, +http://edamontology.org/topic_0166,Protein structural motifs and surfaces, +http://edamontology.org/topic_0167,Structural (3D) profiles, +http://edamontology.org/topic_0172,Protein structure prediction, +http://edamontology.org/topic_0173,Nucleic acid structure prediction, +http://edamontology.org/topic_0174,Ab initio structure prediction, +http://edamontology.org/topic_0175,Homology modelling, +http://edamontology.org/topic_0176,Molecular dynamics, +http://edamontology.org/topic_0177,Molecular docking, +http://edamontology.org/topic_0178,Protein secondary structure prediction, +http://edamontology.org/topic_0179,Protein tertiary structure prediction, +http://edamontology.org/topic_0180,Protein fold recognition, +http://edamontology.org/topic_0182,Sequence alignment, +http://edamontology.org/topic_0183,Structure alignment, +http://edamontology.org/topic_0184,Threading, +http://edamontology.org/topic_0188,Sequence profiles and HMMs, +http://edamontology.org/topic_0191,Phylogeny reconstruction, +http://edamontology.org/topic_0194,Phylogenomics, +http://edamontology.org/topic_0195,Virtual PCR, +http://edamontology.org/topic_0196,Sequence assembly, +http://edamontology.org/topic_0199,Genetic variation, +http://edamontology.org/topic_0200,Microarrays, +http://edamontology.org/topic_0202,Pharmacology, +http://edamontology.org/topic_0203,Gene expression, +http://edamontology.org/topic_0204,Gene regulation, +http://edamontology.org/topic_0208,Pharmacogenomics, +http://edamontology.org/topic_0209,Medicinal chemistry, +http://edamontology.org/topic_0210,Fish, +http://edamontology.org/topic_0211,Flies, +http://edamontology.org/topic_0213,Mice or rats, +http://edamontology.org/topic_0215,Worms, +http://edamontology.org/topic_0217,Literature analysis, +http://edamontology.org/topic_0218,Natural language processing, +http://edamontology.org/topic_0219,"Data submission, annotation and curation", +http://edamontology.org/topic_0220,"Document, record and content management", +http://edamontology.org/topic_0221,Sequence annotation, +http://edamontology.org/topic_0222,Genome annotation, +http://edamontology.org/topic_0593,NMR, +http://edamontology.org/topic_0594,Sequence classification, +http://edamontology.org/topic_0595,Protein classification, +http://edamontology.org/topic_0598,Sequence motif or profile, +http://edamontology.org/topic_0601,Protein modifications, +http://edamontology.org/topic_0602,"Molecular interactions, pathways and networks", +http://edamontology.org/topic_0605,Informatics, +http://edamontology.org/topic_0606,Literature data resources, +http://edamontology.org/topic_0607,Laboratory information management, +http://edamontology.org/topic_0608,Cell and tissue culture, +http://edamontology.org/topic_0610,Ecology, +http://edamontology.org/topic_0611,Electron microscopy, +http://edamontology.org/topic_0612,Cell cycle, +http://edamontology.org/topic_0613,Peptides and amino acids, +http://edamontology.org/topic_0616,Organelles, +http://edamontology.org/topic_0617,Ribosomes, +http://edamontology.org/topic_0618,Scents, +http://edamontology.org/topic_0620,Drugs and target structures, +http://edamontology.org/topic_0621,Model organisms, +http://edamontology.org/topic_0622,Genomics, +http://edamontology.org/topic_0623,Gene and protein families, +http://edamontology.org/topic_0624,Chromosomes, +http://edamontology.org/topic_0625,Genotype and phenotype, +http://edamontology.org/topic_0629,Gene expression and microarray, +http://edamontology.org/topic_0632,Probes and primers, +http://edamontology.org/topic_0634,Pathology, +http://edamontology.org/topic_0635,Specific protein resources, +http://edamontology.org/topic_0637,Taxonomy, +http://edamontology.org/topic_0639,Protein sequence analysis, +http://edamontology.org/topic_0640,Nucleic acid sequence analysis, +http://edamontology.org/topic_0641,Repeat sequences, +http://edamontology.org/topic_0642,Low complexity sequences, +http://edamontology.org/topic_0644,Proteome, +http://edamontology.org/topic_0654,DNA, +http://edamontology.org/topic_0655,Coding RNA, +http://edamontology.org/topic_0659,"Functional, regulatory and non-coding RNA", +http://edamontology.org/topic_0660,rRNA, +http://edamontology.org/topic_0663,tRNA, +http://edamontology.org/topic_0694,Protein secondary structure, +http://edamontology.org/topic_0697,RNA structure, +http://edamontology.org/topic_0698,Protein tertiary structure, +http://edamontology.org/topic_0722,Nucleic acid classification, +http://edamontology.org/topic_0724,Protein families, +http://edamontology.org/topic_0736,Protein folds and structural domains, +http://edamontology.org/topic_0740,Nucleic acid sequence alignment, +http://edamontology.org/topic_0741,Protein sequence alignment, +http://edamontology.org/topic_0747,Nucleic acid sites and features, +http://edamontology.org/topic_0748,Protein sites and features, +http://edamontology.org/topic_0749,Transcription factors and regulatory sites, +http://edamontology.org/topic_0751,Phosphorylation sites, +http://edamontology.org/topic_0753,Metabolic pathways, +http://edamontology.org/topic_0754,Signaling pathways, +http://edamontology.org/topic_0767,Protein and peptide identification, +http://edamontology.org/topic_0769,Workflows, +http://edamontology.org/topic_0770,Data types and objects, +http://edamontology.org/topic_0771,Theoretical biology, +http://edamontology.org/topic_0779,Mitochondria, +http://edamontology.org/topic_0780,Plant biology, +http://edamontology.org/topic_0781,Virology, +http://edamontology.org/topic_0782,Fungi, +http://edamontology.org/topic_0783,Pathogens, +http://edamontology.org/topic_0786,Arabidopsis, +http://edamontology.org/topic_0787,Rice, +http://edamontology.org/topic_0796,Genetic mapping and linkage, +http://edamontology.org/topic_0797,Comparative genomics, +http://edamontology.org/topic_0798,Mobile genetic elements, +http://edamontology.org/topic_0803,Human disease, +http://edamontology.org/topic_0804,Immunology, +http://edamontology.org/topic_0820,Membrane and lipoproteins, +http://edamontology.org/topic_0821,Enzymes, +http://edamontology.org/topic_0922,Primers, +http://edamontology.org/topic_1302,PolyA signal or sites, +http://edamontology.org/topic_1304,CpG island and isochores, +http://edamontology.org/topic_1305,Restriction sites, +http://edamontology.org/topic_1307,Splice sites, +http://edamontology.org/topic_1308,Matrix/scaffold attachment sites, +http://edamontology.org/topic_1311,Operon, +http://edamontology.org/topic_1312,Promoters, +http://edamontology.org/topic_1317,Structural biology, +http://edamontology.org/topic_1456,Protein membrane regions, +http://edamontology.org/topic_1770,Structure comparison, +http://edamontology.org/topic_1775,Function analysis, +http://edamontology.org/topic_1811,Prokaryotes and Archaea, +http://edamontology.org/topic_2225,Protein databases, +http://edamontology.org/topic_2226,Structure determination, +http://edamontology.org/topic_2229,Cell biology, +http://edamontology.org/topic_2230,Classification, +http://edamontology.org/topic_2232,Lipoproteins, +http://edamontology.org/topic_2257,Phylogeny visualisation, +http://edamontology.org/topic_2258,Cheminformatics, +http://edamontology.org/topic_2259,Systems biology, +http://edamontology.org/topic_2269,Statistics and probability, +http://edamontology.org/topic_2271,Structure database search, +http://edamontology.org/topic_2275,Molecular modelling, +http://edamontology.org/topic_2276,Protein function prediction, +http://edamontology.org/topic_2277,SNP, +http://edamontology.org/topic_2278,Transmembrane protein prediction, +http://edamontology.org/topic_2280,Nucleic acid structure comparison, +http://edamontology.org/topic_2397,Exons, +http://edamontology.org/topic_2399,Gene transcription, +http://edamontology.org/topic_2533,DNA mutation, +http://edamontology.org/topic_2640,Oncology, +http://edamontology.org/topic_2661,Toxins and targets, +http://edamontology.org/topic_2754,Introns, +http://edamontology.org/topic_2807,Tool topic, +http://edamontology.org/topic_2809,Study topic, +http://edamontology.org/topic_2811,Nomenclature, +http://edamontology.org/topic_2813,Disease genes and proteins, +http://edamontology.org/topic_2814,Protein structure analysis, +http://edamontology.org/topic_2815,Human biology, +http://edamontology.org/topic_2816,Gene resources, +http://edamontology.org/topic_2817,Yeast, +http://edamontology.org/topic_2818,Eukaryotes, +http://edamontology.org/topic_2819,Invertebrates, +http://edamontology.org/topic_2820,Vertebrates, +http://edamontology.org/topic_2821,Unicellular eukaryotes, +http://edamontology.org/topic_2826,Protein structure alignment, +http://edamontology.org/topic_2828,X-ray diffraction, +http://edamontology.org/topic_2829,"Ontologies, nomenclature and classification", +http://edamontology.org/topic_2830,Immunoproteins and antigens, +http://edamontology.org/topic_2839,Molecules, +http://edamontology.org/topic_2840,Toxicology, +http://edamontology.org/topic_2842,High-throughput sequencing, +http://edamontology.org/topic_2846,Gene regulatory networks, +http://edamontology.org/topic_2847,Disease (specific), +http://edamontology.org/topic_2867,VNTR, +http://edamontology.org/topic_2868,Microsatellites, +http://edamontology.org/topic_2869,RFLP, +http://edamontology.org/topic_2885,DNA polymorphism, +http://edamontology.org/topic_2953,Nucleic acid design, +http://edamontology.org/topic_3032,Primer or probe design, +http://edamontology.org/topic_3038,Structure databases, +http://edamontology.org/topic_3039,Nucleic acid structure, +http://edamontology.org/topic_3041,Sequence databases, +http://edamontology.org/topic_3042,Nucleic acid sequences, +http://edamontology.org/topic_3043,Protein sequences, +http://edamontology.org/topic_3044,Protein interaction networks, +http://edamontology.org/topic_3047,Molecular biology, +http://edamontology.org/topic_3048,Mammals, +http://edamontology.org/topic_3050,Biodiversity, +http://edamontology.org/topic_3052,Sequence clusters and classification, +http://edamontology.org/topic_3053,Genetics, +http://edamontology.org/topic_3055,Quantitative genetics, +http://edamontology.org/topic_3056,Population genetics, +http://edamontology.org/topic_3060,Regulatory RNA, +http://edamontology.org/topic_3061,Documentation and help, +http://edamontology.org/topic_3062,Genetic organisation, +http://edamontology.org/topic_3063,Medical informatics, +http://edamontology.org/topic_3064,Developmental biology, +http://edamontology.org/topic_3065,Embryology, +http://edamontology.org/topic_3067,Anatomy, +http://edamontology.org/topic_3068,Literature and language, +http://edamontology.org/topic_3070,Biology, +http://edamontology.org/topic_3071,Biological databases, +http://edamontology.org/topic_3072,Sequence feature detection, +http://edamontology.org/topic_3073,Nucleic acid feature detection, +http://edamontology.org/topic_3074,Protein feature detection, +http://edamontology.org/topic_3075,Biological system modelling, +http://edamontology.org/topic_3077,Data acquisition, +http://edamontology.org/topic_3078,Genes and proteins resources, +http://edamontology.org/topic_3118,Protein topological domains, +http://edamontology.org/topic_3120,Protein variants, +http://edamontology.org/topic_3123,Expression signals, +http://edamontology.org/topic_3125,DNA binding sites, +http://edamontology.org/topic_3126,Nucleic acid repeats, +http://edamontology.org/topic_3127,DNA replication and recombination, +http://edamontology.org/topic_3135,Signal or transit peptide, +http://edamontology.org/topic_3139,Sequence tagged sites, +http://edamontology.org/topic_3168,Sequencing, +http://edamontology.org/topic_3169,ChIP-seq, +http://edamontology.org/topic_3170,RNA-Seq, +http://edamontology.org/topic_3171,DNA methylation, +http://edamontology.org/topic_3172,Metabolomics, +http://edamontology.org/topic_3173,Epigenomics, +http://edamontology.org/topic_3174,Metagenomics, +http://edamontology.org/topic_3175,Structural variation, +http://edamontology.org/topic_3176,DNA packaging, +http://edamontology.org/topic_3177,DNA-Seq, +http://edamontology.org/topic_3178,RNA-Seq alignment, +http://edamontology.org/topic_3179,ChIP-on-chip, +http://edamontology.org/topic_3263,Data security, +http://edamontology.org/topic_3277,Sample collections, +http://edamontology.org/topic_3292,Biochemistry, +http://edamontology.org/topic_3293,Phylogenetics, +http://edamontology.org/topic_3295,Epigenetics, +http://edamontology.org/topic_3297,Biotechnology, +http://edamontology.org/topic_3298,Phenomics, +http://edamontology.org/topic_3299,Evolutionary biology, +http://edamontology.org/topic_3300,Physiology, +http://edamontology.org/topic_3301,Microbiology, +http://edamontology.org/topic_3302,Parasitology, +http://edamontology.org/topic_3303,Medicine, +http://edamontology.org/topic_3304,Neurobiology, +http://edamontology.org/topic_3305,Public health and epidemiology, +http://edamontology.org/topic_3306,Biophysics, +http://edamontology.org/topic_3307,Computational biology, +http://edamontology.org/topic_3308,Transcriptomics, +http://edamontology.org/topic_3314,Chemistry, +http://edamontology.org/topic_3315,Mathematics, +http://edamontology.org/topic_3316,Computer science, +http://edamontology.org/topic_3318,Physics, +http://edamontology.org/topic_3320,RNA splicing, +http://edamontology.org/topic_3321,Molecular genetics, +http://edamontology.org/topic_3322,Respiratory medicine, +http://edamontology.org/topic_3323,Metabolic disease, +http://edamontology.org/topic_3324,Infectious disease, +http://edamontology.org/topic_3325,Rare diseases, +http://edamontology.org/topic_3332,Computational chemistry, +http://edamontology.org/topic_3334,Neurology, +http://edamontology.org/topic_3335,Cardiology, +http://edamontology.org/topic_3336,Drug discovery, +http://edamontology.org/topic_3337,Biobank, +http://edamontology.org/topic_3338,Mouse clinic, +http://edamontology.org/topic_3339,Microbial collection, +http://edamontology.org/topic_3340,Cell culture collection, +http://edamontology.org/topic_3341,Clone library, +http://edamontology.org/topic_3342,Translational medicine, +http://edamontology.org/topic_3343,Compound libraries and screening, +http://edamontology.org/topic_3344,Biomedical science, +http://edamontology.org/topic_3345,Data identity and mapping, +http://edamontology.org/topic_3346,Sequence search, +http://edamontology.org/topic_3360,Biomarkers, +http://edamontology.org/topic_3361,Laboratory techniques, +http://edamontology.org/topic_3365,"Data architecture, analysis and design", +http://edamontology.org/topic_3366,Data integration and warehousing, +http://edamontology.org/topic_3368,Biomaterials, +http://edamontology.org/topic_3369,Chemical biology, +http://edamontology.org/topic_3370,Analytical chemistry, +http://edamontology.org/topic_3371,Synthetic chemistry, +http://edamontology.org/topic_3372,Software engineering, +http://edamontology.org/topic_3373,Drug development, +http://edamontology.org/topic_3374,Biotherapeutics, +http://edamontology.org/topic_3375,Drug metabolism, +http://edamontology.org/topic_3376,Medicines research and development, +http://edamontology.org/topic_3377,Safety sciences, +http://edamontology.org/topic_3378,Pharmacovigilance, +http://edamontology.org/topic_3379,Preclinical and clinical studies, +http://edamontology.org/topic_3382,Imaging, +http://edamontology.org/topic_3383,Bioimaging, +http://edamontology.org/topic_3384,Medical imaging, +http://edamontology.org/topic_3385,Light microscopy, +http://edamontology.org/topic_3386,Laboratory animal science, +http://edamontology.org/topic_3387,Marine biology, +http://edamontology.org/topic_3388,Molecular medicine, +http://edamontology.org/topic_3390,Nutritional science, +http://edamontology.org/topic_3391,Omics, +http://edamontology.org/topic_3393,Quality affairs, +http://edamontology.org/topic_3394,Regulatory affairs, +http://edamontology.org/topic_3395,Regenerative medicine, +http://edamontology.org/topic_3396,Systems medicine, +http://edamontology.org/topic_3397,Veterinary medicine, +http://edamontology.org/topic_3398,Bioengineering, +http://edamontology.org/topic_3399,Geriatric medicine, +http://edamontology.org/topic_3400,"Allergy, clinical immunology and immunotherapeutics", +http://edamontology.org/topic_3401,Pain medicine, +http://edamontology.org/topic_3402,Anaesthesiology, +http://edamontology.org/topic_3403,Critical care medicine, +http://edamontology.org/topic_3404,Dermatology, +http://edamontology.org/topic_3405,Dentistry, +http://edamontology.org/topic_3406,"Ear, nose and throat medicine", +http://edamontology.org/topic_3407,Endocrinology and metabolism, +http://edamontology.org/topic_3408,Haematology, +http://edamontology.org/topic_3409,Gastroenterology, +http://edamontology.org/topic_3410,Gender medicine, +http://edamontology.org/topic_3411,Gynaecology and obstetrics, +http://edamontology.org/topic_3412,Hepatic and biliary medicine, +http://edamontology.org/topic_3413,Infectious tropical disease, +http://edamontology.org/topic_3414,Trauma medicine, +http://edamontology.org/topic_3415,Medical toxicology, +http://edamontology.org/topic_3416,Musculoskeletal medicine, +http://edamontology.org/topic_3417,Opthalmology, +http://edamontology.org/topic_3418,Paediatrics, +http://edamontology.org/topic_3419,Psychiatry, +http://edamontology.org/topic_3420,Reproductive health, +http://edamontology.org/topic_3421,Surgery, +http://edamontology.org/topic_3422,Urology and nephrology, +http://edamontology.org/topic_3423,Complementary medicine, +http://edamontology.org/topic_3444,MRI, +http://edamontology.org/topic_3448,Neutron diffraction, +http://edamontology.org/topic_3452,Tomography, +http://edamontology.org/topic_3473,Data mining, +http://edamontology.org/topic_3474,Machine learning, +http://edamontology.org/topic_3489,Database management, +http://edamontology.org/topic_3500,Zoology, +http://edamontology.org/topic_3510,"Protein sites, features and motifs", +http://edamontology.org/topic_3511,"Nucleic acid sites, features and motifs", +http://edamontology.org/topic_3512,Gene transcripts, +http://edamontology.org/topic_3514,Protein-ligand interactions, +http://edamontology.org/topic_3515,Protein-drug interactions, +http://edamontology.org/topic_3516,Genotyping experiment, +http://edamontology.org/topic_3517,GWAS study, +http://edamontology.org/topic_3518,Microarray experiment, +http://edamontology.org/topic_3519,PCR experiment, +http://edamontology.org/topic_3520,Proteomics experiment, +http://edamontology.org/topic_3521,2D PAGE experiment, +http://edamontology.org/topic_3522,Northern blot experiment, +http://edamontology.org/topic_3523,RNAi experiment, +http://edamontology.org/topic_3524,Simulation experiment, +http://edamontology.org/topic_3525,Protein-nucleic acid interactions, +http://edamontology.org/topic_3526,Protein-protein interactions, +http://edamontology.org/topic_3527,Cellular process pathways, +http://edamontology.org/topic_3528,Disease pathways, +http://edamontology.org/topic_3529,Environmental information processing pathways, +http://edamontology.org/topic_3530,Genetic information processing pathways, +http://edamontology.org/topic_3531,Protein super-secondary structure, +http://edamontology.org/topic_3533,Protein active sites, +http://edamontology.org/topic_3534,Protein binding sites, +http://edamontology.org/topic_3535,Protein-nucleic acid binding sites, +http://edamontology.org/topic_3536,Protein cleavage sites, +http://edamontology.org/topic_3537,Protein chemical modifications, +http://edamontology.org/topic_3538,Protein disordered structure, +http://edamontology.org/topic_3539,Protein domains, +http://edamontology.org/topic_3540,Protein key folding sites, +http://edamontology.org/topic_3541,Protein post-translational modifications, +http://edamontology.org/topic_3542,Protein secondary structure, +http://edamontology.org/topic_3543,Protein sequence repeats, +http://edamontology.org/topic_3544,Protein signal peptides, +http://edamontology.org/topic_3569,Applied mathematics, +http://edamontology.org/topic_3570,Pure mathematics, +http://edamontology.org/topic_3571,Data governance, +http://edamontology.org/topic_3572,Data quality management, +http://edamontology.org/topic_3573,Freshwater biology, +http://edamontology.org/topic_3574,Human genetics, +http://edamontology.org/topic_3575,Tropical medicine, +http://edamontology.org/topic_3576,Medical biotechnology, +http://edamontology.org/topic_3577,Personalised medicine, +http://edamontology.org/topic_3656,Immunoprecipitation experiment, +http://edamontology.org/topic_3673,Whole genome sequencing, +http://edamontology.org/topic_3674,Methylated DNA immunoprecipitation, +http://edamontology.org/topic_3676,Exome sequencing, +http://edamontology.org/topic_3678,Experimental design and studies, +http://edamontology.org/topic_3679,Animal study, +http://edamontology.org/topic_3697,Microbial ecology, +http://edamontology.org/topic_3794,RNA immunoprecipitation, +http://edamontology.org/topic_3796,Population genomics, +http://edamontology.org/topic_3810,Agricultural science, +http://edamontology.org/topic_3837,Metagenomic sequencing, +http://edamontology.org/topic_3855,Environmental science, +http://edamontology.org/topic_3892,Biomolecular simulation, +http://edamontology.org/topic_3895,Synthetic biology, +http://edamontology.org/topic_3912,Genetic engineering, +http://edamontology.org/topic_3922,Proteogenomics, +http://edamontology.org/topic_3930,Immunogenetics, +http://edamontology.org/topic_3934,Cytometry, +http://edamontology.org/topic_3940,Chromosome conformation capture, +http://edamontology.org/topic_3941,Metatranscriptomics, +http://edamontology.org/topic_3943,Paleogenomics, +http://edamontology.org/topic_3944,Cladistics, +http://edamontology.org/topic_3945,Molecular evolution, +http://edamontology.org/topic_3948,Immunoinformatics, +http://edamontology.org/topic_3954,Echography, +http://edamontology.org/topic_3955,Fluxomics, +http://edamontology.org/topic_3957,Protein interaction experiment, +http://edamontology.org/topic_3958,Copy number variation, +http://edamontology.org/topic_3959,Cytogenetics, +http://edamontology.org/topic_3966,Vaccinology, +http://edamontology.org/topic_3967,Immunomics, +http://edamontology.org/topic_3974,Epistasis, +http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,Obsolete concept (EDAM), +http://www.w3.org/2002/07/owl#DeprecatedClass,DeprecatedClass diff --git a/nf_core/modules/lint/__init__.py b/nf_core/modules/lint/__init__.py index f2472db0d3..7f01f7f4a2 100644 --- a/nf_core/modules/lint/__init__.py +++ b/nf_core/modules/lint/__init__.py @@ -611,13 +611,21 @@ def _add_edam_ontologies(section, edam_formats, desc): section["ontologies"] = [] log.debug(f"expected ontologies for {desc}: {expected_ontologies}") log.debug(f"current ontologies for {desc}: {current_ontologies}") - for ontology, ext in expected_ontologies: - if ontology not in current_ontologies: + for ontology_url, ext in expected_ontologies: + comment_text = edam_formats[ext][1] + if ontology_url not in current_ontologies: try: - section["ontologies"].append(ruamel.yaml.comments.CommentedMap({"edam": ontology})) - section["ontologies"][-1].yaml_add_eol_comment(f"{edam_formats[ext][1]}", "edam") + cm = ruamel.yaml.comments.CommentedMap() + cm["edam"] = ontology_url + cm.yaml_add_eol_comment(comment_text, key="edam") + section["ontologies"].append(cm) except KeyError: log.warning(f"Could not add ontologies in {desc}") + else: + for item in section["ontologies"]: + if isinstance(item, ruamel.yaml.comments.CommentedMap) and item.get("edam") == ontology_url: + item.yaml_add_eol_comment(comment_text, key="edam") + break # EDAM ontologies edam_formats = nf_core.modules.modules_utils.load_edam() @@ -681,7 +689,17 @@ def _add_edam_ontologies(section, edam_formats, desc): def _ensure_string_keys(obj): """Recursively ensure all dict keys are strings (e.g., convert 1.2 -> "1.2")""" - if isinstance(obj, dict): + if isinstance(obj, ruamel.yaml.comments.CommentedMap): + for key in list(obj.keys()): + value = obj.pop(key) + new_key = str(key) if not isinstance(key, str) else key + obj[new_key] = _ensure_string_keys(value) + return obj + elif isinstance(obj, ruamel.yaml.comments.CommentedSeq): + for i, item in enumerate(obj): + obj[i] = _ensure_string_keys(item) + return obj + elif isinstance(obj, dict): return {str(k) if not isinstance(k, str) else k: _ensure_string_keys(v) for k, v in obj.items()} elif isinstance(obj, list): return [_ensure_string_keys(item) for item in obj] diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index 7b38369e8c..461816bb39 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -2,8 +2,6 @@ from pathlib import Path from urllib.parse import urlparse -import requests - from ..components.nfcore_component import NFCoreComponent log = logging.getLogger(__name__) @@ -99,15 +97,17 @@ def get_installed_modules(directory: Path, repo_type="modules") -> tuple[list[st def load_edam(): """Load the EDAM ontology from the nf-core repository""" edam_formats = {} + local_path = Path(__file__).parent.parent / "assets" / "EDAM_1.25.csv" try: - response = requests.get("https://edamontology.org/EDAM.tsv") - except requests.exceptions.RequestException as e: + with local_path.open("rb") as f: + data_bytes = f.read() + except (FileNotFoundError, OSError) as e: log.warning(f"Failed to load EDAM ontology: {e}") - return edam_formats - for line in response.content.splitlines(): - fields = line.decode("utf-8").split("\t") - if fields[0].split("/")[-1].startswith("format") and fields[14]: # We choose an already provided extension - extensions = fields[14].split("|") + return {} + for line in data_bytes.splitlines(): + fields = line.decode("utf-8").split(",") + if fields[0].split("/")[-1].startswith("format") and fields[2]: # We choose an already provided extension + extensions = fields[2].split("|") for extension in extensions: if extension not in edam_formats: edam_formats[extension] = (fields[0], fields[1]) # URL, name From 8316b6e6a10672058ed29b681e8b525992ac4883 Mon Sep 17 00:00:00 2001 From: louis Date: Tue, 28 Apr 2026 21:11:50 +0200 Subject: [PATCH 02/13] Update changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8ac4dbc685..90a675fa34 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ ### Linting +- use static edam.csv and fix yaml comment loss ([#4242](https://github.com/nf-core/tools/pull/4242)) + ### Modules ### Subworkflows From c00bc7ebe0c2db0fb3fdb3f1fe7ec64ac305fe02 Mon Sep 17 00:00:00 2001 From: louis Date: Tue, 28 Apr 2026 21:29:06 +0200 Subject: [PATCH 03/13] Provide script to obtain EDAM --- nf_core/assets/EDAM.tsv | 62 + nf_core/assets/EDAM_1.25.csv | 3474 ----------------------------- nf_core/assets/get_latest_edam.sh | 4 + nf_core/modules/modules_utils.py | 4 +- 4 files changed, 68 insertions(+), 3476 deletions(-) create mode 100644 nf_core/assets/EDAM.tsv delete mode 100644 nf_core/assets/EDAM_1.25.csv create mode 100644 nf_core/assets/get_latest_edam.sh diff --git a/nf_core/assets/EDAM.tsv b/nf_core/assets/EDAM.tsv new file mode 100644 index 0000000000..f77ef5c107 --- /dev/null +++ b/nf_core/assets/EDAM.tsv @@ -0,0 +1,62 @@ +Class ID Preferred Label File extension +http://edamontology.org/format_1930 FASTQ fq|fastq +http://edamontology.org/format_2332 XML xml +http://edamontology.org/format_3256 N-Triples nt +http://edamontology.org/format_3257 Notation3 n3 +http://edamontology.org/format_3261 RDF/XML rdf +http://edamontology.org/format_3464 JSON json +http://edamontology.org/format_3475 TSV tsv|tab +http://edamontology.org/format_3556 MHTML mhtml|mht|eml +http://edamontology.org/format_3665 K-mer countgraph oxlicg +http://edamontology.org/format_3682 imzML metadata file imzML +http://edamontology.org/format_3710 WIFF format wiff +http://edamontology.org/format_3746 BIOM format biom +http://edamontology.org/format_3749 JSON-LD jsonld +http://edamontology.org/format_3750 YAML yaml|yml +http://edamontology.org/format_3752 CSV csv +http://edamontology.org/format_3788 SQL sql +http://edamontology.org/format_3789 XQuery xq|xqy|xquery +http://edamontology.org/format_3839 ibd ibd +http://edamontology.org/format_3857 CWL cwl +http://edamontology.org/format_3911 msh msh +http://edamontology.org/format_3913 Loom loom +http://edamontology.org/format_3915 Zarr zarray|zgroup +http://edamontology.org/format_3916 MTX mtx +http://edamontology.org/format_3956 N-Quads nq +http://edamontology.org/format_3969 Vega json +http://edamontology.org/format_3970 Vega-lite json +http://edamontology.org/format_3972 BNGL bngl +http://edamontology.org/format_3973 Docker image format dockerfile +http://edamontology.org/format_3975 GFA 1 gfa +http://edamontology.org/format_3976 GFA 2 gfa +http://edamontology.org/format_3977 ObjTables xlsx +http://edamontology.org/format_3978 CONTIG contig +http://edamontology.org/format_3979 WEGO wego +http://edamontology.org/format_3980 RPKM rpkm +http://edamontology.org/format_3981 TAR format tar +http://edamontology.org/format_3982 CHAIN chain +http://edamontology.org/format_3983 NET net +http://edamontology.org/format_3984 QMAP qmap +http://edamontology.org/format_3985 gxformat2 ga +http://edamontology.org/format_3986 WMV wmv +http://edamontology.org/format_3987 ZIP format zip +http://edamontology.org/format_3988 LSM lsm +http://edamontology.org/format_3989 GZIP format gz|gzip +http://edamontology.org/format_3990 AVI avi +http://edamontology.org/format_3991 TrackDB trackDb +http://edamontology.org/format_3992 CIGAR format cigar +http://edamontology.org/format_3993 Stereolithography format stl +http://edamontology.org/format_3994 U3D u3d +http://edamontology.org/format_3995 Texture file format tex +http://edamontology.org/format_3996 Python script py +http://edamontology.org/format_3997 MPEG-4 mp4 +http://edamontology.org/format_3998 Perl script pl +http://edamontology.org/format_3999 R script R +http://edamontology.org/format_4000 R markdown Rmd +http://edamontology.org/format_4001 NIFTI format nii +http://edamontology.org/format_4002 pickle pickle +http://edamontology.org/format_4003 NumPy format npy +http://edamontology.org/format_4004 SimTools repertoire file format repz +http://edamontology.org/format_4005 Configuration file format cfg +http://edamontology.org/format_4006 Zstandard format zst +http://edamontology.org/format_4007 MATLAB script m diff --git a/nf_core/assets/EDAM_1.25.csv b/nf_core/assets/EDAM_1.25.csv deleted file mode 100644 index 497367c8f9..0000000000 --- a/nf_core/assets/EDAM_1.25.csv +++ /dev/null @@ -1,3474 +0,0 @@ -Class ID,Preferred Label,File extension -http://edamontology.org/data_0005,Resource type, -http://edamontology.org/data_0006,Data, -http://edamontology.org/data_0007,Tool, -http://edamontology.org/data_0581,Database, -http://edamontology.org/data_0582,Ontology, -http://edamontology.org/data_0583,Directory metadata, -http://edamontology.org/data_0831,MeSH vocabulary, -http://edamontology.org/data_0832,HGNC vocabulary, -http://edamontology.org/data_0835,UMLS vocabulary, -http://edamontology.org/data_0842,Identifier, -http://edamontology.org/data_0843,Database entry, -http://edamontology.org/data_0844,Molecular mass, -http://edamontology.org/data_0845,Molecular charge, -http://edamontology.org/data_0846,Chemical formula, -http://edamontology.org/data_0847,QSAR descriptor, -http://edamontology.org/data_0848,Raw sequence, -http://edamontology.org/data_0849,Sequence record, -http://edamontology.org/data_0850,Sequence set, -http://edamontology.org/data_0851,Sequence mask character, -http://edamontology.org/data_0852,Sequence mask type, -http://edamontology.org/data_0853,DNA sense specification, -http://edamontology.org/data_0854,Sequence length specification, -http://edamontology.org/data_0855,Sequence metadata, -http://edamontology.org/data_0856,Sequence feature source, -http://edamontology.org/data_0857,Sequence search results, -http://edamontology.org/data_0858,Sequence signature matches, -http://edamontology.org/data_0859,Sequence signature model, -http://edamontology.org/data_0860,Sequence signature data, -http://edamontology.org/data_0861,Sequence alignment (words), -http://edamontology.org/data_0862,Dotplot, -http://edamontology.org/data_0863,Sequence alignment, -http://edamontology.org/data_0864,Sequence alignment parameter, -http://edamontology.org/data_0865,Sequence similarity score, -http://edamontology.org/data_0866,Sequence alignment metadata, -http://edamontology.org/data_0867,Sequence alignment report, -http://edamontology.org/data_0868,Profile-profile alignment, -http://edamontology.org/data_0869,Sequence-profile alignment, -http://edamontology.org/data_0870,Sequence distance matrix, -http://edamontology.org/data_0871,Phylogenetic character data, -http://edamontology.org/data_0872,Phylogenetic tree, -http://edamontology.org/data_0874,Comparison matrix, -http://edamontology.org/data_0875,Protein topology, -http://edamontology.org/data_0876,Protein features report (secondary structure), -http://edamontology.org/data_0877,Protein features report (super-secondary), -http://edamontology.org/data_0878,Protein secondary structure alignment, -http://edamontology.org/data_0879,Secondary structure alignment metadata (protein), -http://edamontology.org/data_0880,RNA secondary structure, -http://edamontology.org/data_0881,RNA secondary structure alignment, -http://edamontology.org/data_0882,Secondary structure alignment metadata (RNA), -http://edamontology.org/data_0883,Structure, -http://edamontology.org/data_0884,Tertiary structure record, -http://edamontology.org/data_0885,Structure database search results, -http://edamontology.org/data_0886,Structure alignment, -http://edamontology.org/data_0887,Structure alignment report, -http://edamontology.org/data_0888,Structure similarity score, -http://edamontology.org/data_0889,Structural profile, -http://edamontology.org/data_0890,Structural (3D) profile alignment, -http://edamontology.org/data_0891,Sequence-3D profile alignment, -http://edamontology.org/data_0892,Protein sequence-structure scoring matrix, -http://edamontology.org/data_0893,Sequence-structure alignment, -http://edamontology.org/data_0894,Amino acid annotation, -http://edamontology.org/data_0895,Peptide annotation, -http://edamontology.org/data_0896,Protein report, -http://edamontology.org/data_0897,Protein property, -http://edamontology.org/data_0899,Protein structural motifs and surfaces, -http://edamontology.org/data_0900,Protein domain classification, -http://edamontology.org/data_0901,Protein features report (domains), -http://edamontology.org/data_0902,Protein architecture report, -http://edamontology.org/data_0903,Protein folding report, -http://edamontology.org/data_0904,Protein features (mutation), -http://edamontology.org/data_0905,Protein interaction raw data, -http://edamontology.org/data_0906,Protein interaction data, -http://edamontology.org/data_0907,Protein family report, -http://edamontology.org/data_0909,Vmax, -http://edamontology.org/data_0910,Km, -http://edamontology.org/data_0911,Nucleotide base annotation, -http://edamontology.org/data_0912,Nucleic acid property, -http://edamontology.org/data_0914,Codon usage data, -http://edamontology.org/data_0916,Gene report, -http://edamontology.org/data_0917,Gene classification, -http://edamontology.org/data_0918,DNA variation, -http://edamontology.org/data_0919,Chromosome report, -http://edamontology.org/data_0920,Genotype/phenotype report, -http://edamontology.org/data_0923,PCR experiment report, -http://edamontology.org/data_0924,Sequence trace, -http://edamontology.org/data_0925,Sequence assembly, -http://edamontology.org/data_0926,RH scores, -http://edamontology.org/data_0927,Genetic linkage report, -http://edamontology.org/data_0928,Gene expression profile, -http://edamontology.org/data_0931,Microarray experiment report, -http://edamontology.org/data_0932,Oligonucleotide probe data, -http://edamontology.org/data_0933,SAGE experimental data, -http://edamontology.org/data_0934,MPSS experimental data, -http://edamontology.org/data_0935,SBS experimental data, -http://edamontology.org/data_0936,Sequence tag profile (with gene assignment), -http://edamontology.org/data_0937,Electron density map, -http://edamontology.org/data_0938,Raw NMR data, -http://edamontology.org/data_0939,CD spectra, -http://edamontology.org/data_0940,Volume map, -http://edamontology.org/data_0941,Electron microscopy model, -http://edamontology.org/data_0942,2D PAGE image, -http://edamontology.org/data_0943,Mass spectrum, -http://edamontology.org/data_0944,Peptide mass fingerprint, -http://edamontology.org/data_0945,Peptide identification, -http://edamontology.org/data_0946,Pathway or network annotation, -http://edamontology.org/data_0947,Biological pathway map, -http://edamontology.org/data_0948,Data resource definition, -http://edamontology.org/data_0949,Workflow metadata, -http://edamontology.org/data_0950,Mathematical model, -http://edamontology.org/data_0951,Statistical estimate score, -http://edamontology.org/data_0952,EMBOSS database resource definition, -http://edamontology.org/data_0953,Version information, -http://edamontology.org/data_0954,Database cross-mapping, -http://edamontology.org/data_0955,Data index, -http://edamontology.org/data_0956,Data index report, -http://edamontology.org/data_0957,Database metadata, -http://edamontology.org/data_0958,Tool metadata, -http://edamontology.org/data_0959,Job metadata, -http://edamontology.org/data_0960,User metadata, -http://edamontology.org/data_0962,Small molecule report, -http://edamontology.org/data_0963,Cell line report, -http://edamontology.org/data_0964,Scent annotation, -http://edamontology.org/data_0966,Ontology term, -http://edamontology.org/data_0967,Ontology concept data, -http://edamontology.org/data_0968,Keyword, -http://edamontology.org/data_0970,Citation, -http://edamontology.org/data_0971,Article, -http://edamontology.org/data_0972,Text mining report, -http://edamontology.org/data_0974,Entity identifier, -http://edamontology.org/data_0975,Data resource identifier, -http://edamontology.org/data_0976,Identifier (by type of data), -http://edamontology.org/data_0977,Tool identifier, -http://edamontology.org/data_0978,Discrete entity identifier, -http://edamontology.org/data_0979,Entity feature identifier, -http://edamontology.org/data_0980,Entity collection identifier, -http://edamontology.org/data_0981,Phenomenon identifier, -http://edamontology.org/data_0982,Molecule identifier, -http://edamontology.org/data_0983,Atom ID, -http://edamontology.org/data_0984,Molecule name, -http://edamontology.org/data_0985,Molecule type, -http://edamontology.org/data_0986,Chemical identifier, -http://edamontology.org/data_0987,Chromosome name, -http://edamontology.org/data_0988,Peptide identifier, -http://edamontology.org/data_0989,Protein identifier, -http://edamontology.org/data_0990,Compound name, -http://edamontology.org/data_0991,Chemical registry number, -http://edamontology.org/data_0992,Ligand identifier, -http://edamontology.org/data_0993,Drug identifier, -http://edamontology.org/data_0994,Amino acid identifier, -http://edamontology.org/data_0995,Nucleotide identifier, -http://edamontology.org/data_0996,Monosaccharide identifier, -http://edamontology.org/data_0997,Chemical name (ChEBI), -http://edamontology.org/data_0998,Chemical name (IUPAC), -http://edamontology.org/data_0999,Chemical name (INN), -http://edamontology.org/data_1000,Chemical name (brand), -http://edamontology.org/data_1001,Chemical name (synonymous), -http://edamontology.org/data_1002,CAS number, -http://edamontology.org/data_1003,Chemical registry number (Beilstein), -http://edamontology.org/data_1004,Chemical registry number (Gmelin), -http://edamontology.org/data_1005,HET group name, -http://edamontology.org/data_1006,Amino acid name, -http://edamontology.org/data_1007,Nucleotide code, -http://edamontology.org/data_1008,Polypeptide chain ID, -http://edamontology.org/data_1009,Protein name, -http://edamontology.org/data_1010,Enzyme identifier, -http://edamontology.org/data_1011,EC number, -http://edamontology.org/data_1012,Enzyme name, -http://edamontology.org/data_1013,Restriction enzyme name, -http://edamontology.org/data_1014,Sequence position specification, -http://edamontology.org/data_1015,Sequence feature ID, -http://edamontology.org/data_1016,Sequence position, -http://edamontology.org/data_1017,Sequence range, -http://edamontology.org/data_1018,Nucleic acid feature identifier, -http://edamontology.org/data_1019,Protein feature identifier, -http://edamontology.org/data_1020,Sequence feature key, -http://edamontology.org/data_1021,Sequence feature qualifier, -http://edamontology.org/data_1022,Sequence feature label, -http://edamontology.org/data_1023,EMBOSS Uniform Feature Object, -http://edamontology.org/data_1024,Codon name, -http://edamontology.org/data_1025,Gene identifier, -http://edamontology.org/data_1026,Gene symbol, -http://edamontology.org/data_1027,Gene ID (NCBI), -http://edamontology.org/data_1028,Gene identifier (NCBI RefSeq), -http://edamontology.org/data_1029,Gene identifier (NCBI UniGene), -http://edamontology.org/data_1030,Gene identifier (Entrez), -http://edamontology.org/data_1031,Gene ID (CGD), -http://edamontology.org/data_1032,Gene ID (DictyBase), -http://edamontology.org/data_1033,Ensembl gene ID, -http://edamontology.org/data_1034,Gene ID (SGD), -http://edamontology.org/data_1035,Gene ID (GeneDB), -http://edamontology.org/data_1036,TIGR identifier, -http://edamontology.org/data_1037,TAIR accession (gene), -http://edamontology.org/data_1038,Protein domain ID, -http://edamontology.org/data_1039,SCOP domain identifier, -http://edamontology.org/data_1040,CATH domain ID, -http://edamontology.org/data_1041,SCOP concise classification string (sccs), -http://edamontology.org/data_1042,SCOP sunid, -http://edamontology.org/data_1043,CATH node ID, -http://edamontology.org/data_1044,Kingdom name, -http://edamontology.org/data_1045,Species name, -http://edamontology.org/data_1046,Strain name, -http://edamontology.org/data_1047,URI, -http://edamontology.org/data_1048,Database ID, -http://edamontology.org/data_1049,Directory name, -http://edamontology.org/data_1050,File name, -http://edamontology.org/data_1051,Ontology name, -http://edamontology.org/data_1052,URL, -http://edamontology.org/data_1053,URN, -http://edamontology.org/data_1055,LSID, -http://edamontology.org/data_1056,Database name, -http://edamontology.org/data_1057,Sequence database name, -http://edamontology.org/data_1058,Enumerated file name, -http://edamontology.org/data_1059,File name extension, -http://edamontology.org/data_1060,File base name, -http://edamontology.org/data_1061,QSAR descriptor name, -http://edamontology.org/data_1062,Database entry identifier, -http://edamontology.org/data_1063,Sequence identifier, -http://edamontology.org/data_1064,Sequence set ID, -http://edamontology.org/data_1065,Sequence signature identifier, -http://edamontology.org/data_1066,Sequence alignment ID, -http://edamontology.org/data_1067,Phylogenetic distance matrix identifier, -http://edamontology.org/data_1068,Phylogenetic tree ID, -http://edamontology.org/data_1069,Comparison matrix identifier, -http://edamontology.org/data_1070,Structure ID, -http://edamontology.org/data_1071,Structural (3D) profile ID, -http://edamontology.org/data_1072,Structure alignment ID, -http://edamontology.org/data_1073,Amino acid index ID, -http://edamontology.org/data_1074,Protein interaction ID, -http://edamontology.org/data_1075,Protein family identifier, -http://edamontology.org/data_1076,Codon usage table name, -http://edamontology.org/data_1077,Transcription factor identifier, -http://edamontology.org/data_1078,Experiment annotation ID, -http://edamontology.org/data_1079,Electron microscopy model ID, -http://edamontology.org/data_1080,Gene expression report ID, -http://edamontology.org/data_1081,Genotype and phenotype annotation ID, -http://edamontology.org/data_1082,Pathway or network identifier, -http://edamontology.org/data_1083,Workflow ID, -http://edamontology.org/data_1084,Data resource definition ID, -http://edamontology.org/data_1085,Biological model ID, -http://edamontology.org/data_1086,Compound identifier, -http://edamontology.org/data_1087,Ontology concept ID, -http://edamontology.org/data_1088,Article ID, -http://edamontology.org/data_1089,FlyBase ID, -http://edamontology.org/data_1091,WormBase name, -http://edamontology.org/data_1092,WormBase class, -http://edamontology.org/data_1093,Sequence accession, -http://edamontology.org/data_1094,Sequence type, -http://edamontology.org/data_1095,EMBOSS Uniform Sequence Address, -http://edamontology.org/data_1096,Sequence accession (protein), -http://edamontology.org/data_1097,Sequence accession (nucleic acid), -http://edamontology.org/data_1098,RefSeq accession, -http://edamontology.org/data_1099,UniProt accession (extended), -http://edamontology.org/data_1100,PIR identifier, -http://edamontology.org/data_1101,TREMBL accession, -http://edamontology.org/data_1102,Gramene primary identifier, -http://edamontology.org/data_1103,EMBL/GenBank/DDBJ ID, -http://edamontology.org/data_1104,Sequence cluster ID (UniGene), -http://edamontology.org/data_1105,dbEST accession, -http://edamontology.org/data_1106,dbSNP ID, -http://edamontology.org/data_1110,EMBOSS sequence type, -http://edamontology.org/data_1111,EMBOSS listfile, -http://edamontology.org/data_1112,Sequence cluster ID, -http://edamontology.org/data_1113,Sequence cluster ID (COG), -http://edamontology.org/data_1114,Sequence motif identifier, -http://edamontology.org/data_1115,Sequence profile ID, -http://edamontology.org/data_1116,ELM ID, -http://edamontology.org/data_1117,Prosite accession number, -http://edamontology.org/data_1118,HMMER hidden Markov model ID, -http://edamontology.org/data_1119,JASPAR profile ID, -http://edamontology.org/data_1120,Sequence alignment type, -http://edamontology.org/data_1121,BLAST sequence alignment type, -http://edamontology.org/data_1122,Phylogenetic tree type, -http://edamontology.org/data_1123,TreeBASE study accession number, -http://edamontology.org/data_1124,TreeFam accession number, -http://edamontology.org/data_1125,Comparison matrix type, -http://edamontology.org/data_1126,Comparison matrix name, -http://edamontology.org/data_1127,PDB ID, -http://edamontology.org/data_1128,AAindex ID, -http://edamontology.org/data_1129,BIND accession number, -http://edamontology.org/data_1130,IntAct accession number, -http://edamontology.org/data_1131,Protein family name, -http://edamontology.org/data_1132,InterPro entry name, -http://edamontology.org/data_1133,InterPro accession, -http://edamontology.org/data_1134,InterPro secondary accession, -http://edamontology.org/data_1135,Gene3D ID, -http://edamontology.org/data_1136,PIRSF ID, -http://edamontology.org/data_1137,PRINTS code, -http://edamontology.org/data_1138,Pfam accession number, -http://edamontology.org/data_1139,SMART accession number, -http://edamontology.org/data_1140,Superfamily hidden Markov model number, -http://edamontology.org/data_1141,TIGRFam ID, -http://edamontology.org/data_1142,ProDom accession number, -http://edamontology.org/data_1143,TRANSFAC accession number, -http://edamontology.org/data_1144,ArrayExpress accession number, -http://edamontology.org/data_1145,PRIDE experiment accession number, -http://edamontology.org/data_1146,EMDB ID, -http://edamontology.org/data_1147,GEO accession number, -http://edamontology.org/data_1148,GermOnline ID, -http://edamontology.org/data_1149,EMAGE ID, -http://edamontology.org/data_1150,Disease ID, -http://edamontology.org/data_1151,HGVbase ID, -http://edamontology.org/data_1152,HIVDB identifier, -http://edamontology.org/data_1153,OMIM ID, -http://edamontology.org/data_1154,KEGG object identifier, -http://edamontology.org/data_1155,Pathway ID (reactome), -http://edamontology.org/data_1156,Pathway ID (aMAZE), -http://edamontology.org/data_1157,Pathway ID (BioCyc), -http://edamontology.org/data_1158,Pathway ID (INOH), -http://edamontology.org/data_1159,Pathway ID (PATIKA), -http://edamontology.org/data_1160,Pathway ID (CPDB), -http://edamontology.org/data_1161,Pathway ID (Panther), -http://edamontology.org/data_1162,MIRIAM identifier, -http://edamontology.org/data_1163,MIRIAM data type name, -http://edamontology.org/data_1164,MIRIAM URI, -http://edamontology.org/data_1165,MIRIAM data type primary name, -http://edamontology.org/data_1166,MIRIAM data type synonymous name, -http://edamontology.org/data_1167,Taverna workflow ID, -http://edamontology.org/data_1170,Biological model name, -http://edamontology.org/data_1171,BioModel ID, -http://edamontology.org/data_1172,PubChem CID, -http://edamontology.org/data_1173,ChemSpider ID, -http://edamontology.org/data_1174,ChEBI ID, -http://edamontology.org/data_1175,BioPax concept ID, -http://edamontology.org/data_1176,GO concept ID, -http://edamontology.org/data_1177,MeSH concept ID, -http://edamontology.org/data_1178,HGNC concept ID, -http://edamontology.org/data_1179,NCBI taxonomy ID, -http://edamontology.org/data_1180,Plant Ontology concept ID, -http://edamontology.org/data_1181,UMLS concept ID, -http://edamontology.org/data_1182,FMA concept ID, -http://edamontology.org/data_1183,EMAP concept ID, -http://edamontology.org/data_1184,ChEBI concept ID, -http://edamontology.org/data_1185,MGED concept ID, -http://edamontology.org/data_1186,myGrid concept ID, -http://edamontology.org/data_1187,PubMed ID, -http://edamontology.org/data_1188,DOI, -http://edamontology.org/data_1189,Medline UI, -http://edamontology.org/data_1190,Tool name, -http://edamontology.org/data_1191,Tool name (signature), -http://edamontology.org/data_1192,Tool name (BLAST), -http://edamontology.org/data_1193,Tool name (FASTA), -http://edamontology.org/data_1194,Tool name (EMBOSS), -http://edamontology.org/data_1195,Tool name (EMBASSY package), -http://edamontology.org/data_1201,QSAR descriptor (constitutional), -http://edamontology.org/data_1202,QSAR descriptor (electronic), -http://edamontology.org/data_1203,QSAR descriptor (geometrical), -http://edamontology.org/data_1204,QSAR descriptor (topological), -http://edamontology.org/data_1205,QSAR descriptor (molecular), -http://edamontology.org/data_1233,Sequence set (protein), -http://edamontology.org/data_1234,Sequence set (nucleic acid), -http://edamontology.org/data_1235,Sequence cluster, -http://edamontology.org/data_1236,Psiblast checkpoint file, -http://edamontology.org/data_1237,HMMER synthetic sequences set, -http://edamontology.org/data_1238,Proteolytic digest, -http://edamontology.org/data_1239,Restriction digest, -http://edamontology.org/data_1240,PCR primers, -http://edamontology.org/data_1241,vectorstrip cloning vector definition file, -http://edamontology.org/data_1242,Primer3 internal oligo mishybridizing library, -http://edamontology.org/data_1243,Primer3 mispriming library file, -http://edamontology.org/data_1244,primersearch primer pairs sequence record, -http://edamontology.org/data_1245,Sequence cluster (protein), -http://edamontology.org/data_1246,Sequence cluster (nucleic acid), -http://edamontology.org/data_1249,Sequence length, -http://edamontology.org/data_1250,Word size, -http://edamontology.org/data_1251,Window size, -http://edamontology.org/data_1252,Sequence length range, -http://edamontology.org/data_1253,Sequence information report, -http://edamontology.org/data_1254,Sequence property, -http://edamontology.org/data_1255,Sequence features, -http://edamontology.org/data_1256,Sequence features (comparative), -http://edamontology.org/data_1257,Sequence property (protein), -http://edamontology.org/data_1258,Sequence property (nucleic acid), -http://edamontology.org/data_1259,Sequence complexity report, -http://edamontology.org/data_1260,Sequence ambiguity report, -http://edamontology.org/data_1261,Sequence composition report, -http://edamontology.org/data_1262,Peptide molecular weight hits, -http://edamontology.org/data_1263,Base position variability plot, -http://edamontology.org/data_1264,Sequence composition table, -http://edamontology.org/data_1265,Base frequencies table, -http://edamontology.org/data_1266,Base word frequencies table, -http://edamontology.org/data_1267,Amino acid frequencies table, -http://edamontology.org/data_1268,Amino acid word frequencies table, -http://edamontology.org/data_1269,DAS sequence feature annotation, -http://edamontology.org/data_1270,Feature table, -http://edamontology.org/data_1274,Map, -http://edamontology.org/data_1276,Nucleic acid features, -http://edamontology.org/data_1277,Protein features, -http://edamontology.org/data_1278,Genetic map, -http://edamontology.org/data_1279,Sequence map, -http://edamontology.org/data_1280,Physical map, -http://edamontology.org/data_1281,Sequence signature map, -http://edamontology.org/data_1283,Cytogenetic map, -http://edamontology.org/data_1284,DNA transduction map, -http://edamontology.org/data_1285,Gene map, -http://edamontology.org/data_1286,Plasmid map, -http://edamontology.org/data_1288,Genome map, -http://edamontology.org/data_1289,Restriction map, -http://edamontology.org/data_1290,InterPro compact match image, -http://edamontology.org/data_1291,InterPro detailed match image, -http://edamontology.org/data_1292,InterPro architecture image, -http://edamontology.org/data_1293,SMART protein schematic, -http://edamontology.org/data_1294,GlobPlot domain image, -http://edamontology.org/data_1298,Sequence motif matches, -http://edamontology.org/data_1299,Sequence features (repeats), -http://edamontology.org/data_1300,Gene and transcript structure (report), -http://edamontology.org/data_1301,Mobile genetic elements, -http://edamontology.org/data_1303,Nucleic acid features (quadruplexes), -http://edamontology.org/data_1306,Nucleosome exclusion sequences, -http://edamontology.org/data_1309,Gene features (exonic splicing enhancer), -http://edamontology.org/data_1310,Nucleic acid features (microRNA), -http://edamontology.org/data_1313,Coding region, -http://edamontology.org/data_1314,Gene features (SECIS element), -http://edamontology.org/data_1315,Transcription factor binding sites, -http://edamontology.org/data_1321,Protein features (sites), -http://edamontology.org/data_1322,Protein features report (signal peptides), -http://edamontology.org/data_1323,Protein features report (cleavage sites), -http://edamontology.org/data_1324,Protein features (post-translation modifications), -http://edamontology.org/data_1325,Protein features report (active sites), -http://edamontology.org/data_1326,Protein features report (binding sites), -http://edamontology.org/data_1327,Protein features (epitopes), -http://edamontology.org/data_1328,Protein features report (nucleic acid binding sites), -http://edamontology.org/data_1329,MHC Class I epitopes report, -http://edamontology.org/data_1330,MHC Class II epitopes report, -http://edamontology.org/data_1331,Protein features (PEST sites), -http://edamontology.org/data_1338,Sequence database hits scores list, -http://edamontology.org/data_1339,Sequence database hits alignments list, -http://edamontology.org/data_1340,Sequence database hits evaluation data, -http://edamontology.org/data_1344,MEME motif alphabet, -http://edamontology.org/data_1345,MEME background frequencies file, -http://edamontology.org/data_1346,MEME motifs directive file, -http://edamontology.org/data_1347,Dirichlet distribution, -http://edamontology.org/data_1348,HMM emission and transition counts, -http://edamontology.org/data_1352,Regular expression, -http://edamontology.org/data_1353,Sequence motif, -http://edamontology.org/data_1354,Sequence profile, -http://edamontology.org/data_1355,Protein signature, -http://edamontology.org/data_1358,Prosite nucleotide pattern, -http://edamontology.org/data_1359,Prosite protein pattern, -http://edamontology.org/data_1361,Position frequency matrix, -http://edamontology.org/data_1362,Position weight matrix, -http://edamontology.org/data_1363,Information content matrix, -http://edamontology.org/data_1364,Hidden Markov model, -http://edamontology.org/data_1365,Fingerprint, -http://edamontology.org/data_1368,Domainatrix signature, -http://edamontology.org/data_1371,HMMER NULL hidden Markov model, -http://edamontology.org/data_1372,Protein family signature, -http://edamontology.org/data_1373,Protein domain signature, -http://edamontology.org/data_1374,Protein region signature, -http://edamontology.org/data_1375,Protein repeat signature, -http://edamontology.org/data_1376,Protein site signature, -http://edamontology.org/data_1377,Protein conserved site signature, -http://edamontology.org/data_1378,Protein active site signature, -http://edamontology.org/data_1379,Protein binding site signature, -http://edamontology.org/data_1380,Protein post-translational modification signature, -http://edamontology.org/data_1381,Pair sequence alignment, -http://edamontology.org/data_1382,Sequence alignment (multiple), -http://edamontology.org/data_1383,Nucleic acid sequence alignment, -http://edamontology.org/data_1384,Protein sequence alignment, -http://edamontology.org/data_1385,Hybrid sequence alignment, -http://edamontology.org/data_1386,Sequence alignment (nucleic acid pair), -http://edamontology.org/data_1387,Sequence alignment (protein pair), -http://edamontology.org/data_1388,Hybrid sequence alignment (pair), -http://edamontology.org/data_1389,Multiple nucleotide sequence alignment, -http://edamontology.org/data_1390,Multiple protein sequence alignment, -http://edamontology.org/data_1394,Alignment score or penalty, -http://edamontology.org/data_1395,Score end gaps control, -http://edamontology.org/data_1396,Aligned sequence order, -http://edamontology.org/data_1397,Gap opening penalty, -http://edamontology.org/data_1398,Gap extension penalty, -http://edamontology.org/data_1399,Gap separation penalty, -http://edamontology.org/data_1400,Terminal gap penalty, -http://edamontology.org/data_1401,Match reward score, -http://edamontology.org/data_1402,Mismatch penalty score, -http://edamontology.org/data_1403,Drop off score, -http://edamontology.org/data_1404,Gap opening penalty (integer), -http://edamontology.org/data_1405,Gap opening penalty (float), -http://edamontology.org/data_1406,Gap extension penalty (integer), -http://edamontology.org/data_1407,Gap extension penalty (float), -http://edamontology.org/data_1408,Gap separation penalty (integer), -http://edamontology.org/data_1409,Gap separation penalty (float), -http://edamontology.org/data_1410,Terminal gap opening penalty, -http://edamontology.org/data_1411,Terminal gap extension penalty, -http://edamontology.org/data_1412,Sequence identity, -http://edamontology.org/data_1413,Sequence similarity, -http://edamontology.org/data_1414,Sequence alignment metadata (quality report), -http://edamontology.org/data_1415,Sequence alignment report (site conservation), -http://edamontology.org/data_1416,Sequence alignment report (site correlation), -http://edamontology.org/data_1417,Sequence-profile alignment (Domainatrix signature), -http://edamontology.org/data_1418,Sequence-profile alignment (HMM), -http://edamontology.org/data_1420,Sequence-profile alignment (fingerprint), -http://edamontology.org/data_1426,Phylogenetic continuous quantitative data, -http://edamontology.org/data_1427,Phylogenetic discrete data, -http://edamontology.org/data_1428,Phylogenetic character cliques, -http://edamontology.org/data_1429,Phylogenetic invariants, -http://edamontology.org/data_1438,Phylogenetic report, -http://edamontology.org/data_1439,DNA substitution model, -http://edamontology.org/data_1440,Phylogenetic tree report (tree shape), -http://edamontology.org/data_1441,Phylogenetic tree report (tree evaluation), -http://edamontology.org/data_1442,Phylogenetic tree distances, -http://edamontology.org/data_1443,Phylogenetic tree report (tree stratigraphic), -http://edamontology.org/data_1444,Phylogenetic character contrasts, -http://edamontology.org/data_1446,Comparison matrix (integers), -http://edamontology.org/data_1447,Comparison matrix (floats), -http://edamontology.org/data_1448,Comparison matrix (nucleotide), -http://edamontology.org/data_1449,Comparison matrix (amino acid), -http://edamontology.org/data_1450,Nucleotide comparison matrix (integers), -http://edamontology.org/data_1451,Nucleotide comparison matrix (floats), -http://edamontology.org/data_1452,Amino acid comparison matrix (integers), -http://edamontology.org/data_1453,Amino acid comparison matrix (floats), -http://edamontology.org/data_1459,Nucleic acid structure, -http://edamontology.org/data_1460,Protein structure, -http://edamontology.org/data_1461,Protein-ligand complex, -http://edamontology.org/data_1462,Carbohydrate structure, -http://edamontology.org/data_1463,Small molecule structure, -http://edamontology.org/data_1464,DNA structure, -http://edamontology.org/data_1465,RNA structure, -http://edamontology.org/data_1466,tRNA structure, -http://edamontology.org/data_1467,Protein chain, -http://edamontology.org/data_1468,Protein domain, -http://edamontology.org/data_1469,Protein structure (all atoms), -http://edamontology.org/data_1470,C-alpha trace, -http://edamontology.org/data_1471,Protein chain (all atoms), -http://edamontology.org/data_1472,Protein chain (C-alpha atoms), -http://edamontology.org/data_1473,Protein domain (all atoms), -http://edamontology.org/data_1474,Protein domain (C-alpha atoms), -http://edamontology.org/data_1479,Structure alignment (pair), -http://edamontology.org/data_1480,Structure alignment (multiple), -http://edamontology.org/data_1481,Protein structure alignment, -http://edamontology.org/data_1482,Nucleic acid structure alignment, -http://edamontology.org/data_1483,Structure alignment (protein pair), -http://edamontology.org/data_1484,Multiple protein tertiary structure alignment, -http://edamontology.org/data_1485,Structure alignment (protein all atoms), -http://edamontology.org/data_1486,Structure alignment (protein C-alpha atoms), -http://edamontology.org/data_1487,Pairwise protein tertiary structure alignment (all atoms), -http://edamontology.org/data_1488,Pairwise protein tertiary structure alignment (C-alpha atoms), -http://edamontology.org/data_1489,Multiple protein tertiary structure alignment (all atoms), -http://edamontology.org/data_1490,Multiple protein tertiary structure alignment (C-alpha atoms), -http://edamontology.org/data_1491,Structure alignment (nucleic acid pair), -http://edamontology.org/data_1492,Multiple nucleic acid tertiary structure alignment, -http://edamontology.org/data_1493,RNA structure alignment, -http://edamontology.org/data_1494,Structural transformation matrix, -http://edamontology.org/data_1495,DaliLite hit table, -http://edamontology.org/data_1496,Molecular similarity score, -http://edamontology.org/data_1497,Root-mean-square deviation, -http://edamontology.org/data_1498,Tanimoto similarity score, -http://edamontology.org/data_1499,3D-1D scoring matrix, -http://edamontology.org/data_1501,Amino acid index, -http://edamontology.org/data_1502,Amino acid index (chemical classes), -http://edamontology.org/data_1503,Amino acid pair-wise contact potentials, -http://edamontology.org/data_1505,Amino acid index (molecular weight), -http://edamontology.org/data_1506,Amino acid index (hydropathy), -http://edamontology.org/data_1507,Amino acid index (White-Wimley data), -http://edamontology.org/data_1508,Amino acid index (van der Waals radii), -http://edamontology.org/data_1509,Enzyme report, -http://edamontology.org/data_1517,Restriction enzyme report, -http://edamontology.org/data_1519,Peptide molecular weights, -http://edamontology.org/data_1520,Peptide hydrophobic moment, -http://edamontology.org/data_1521,Protein aliphatic index, -http://edamontology.org/data_1522,Protein sequence hydropathy plot, -http://edamontology.org/data_1523,Protein charge plot, -http://edamontology.org/data_1524,Protein solubility, -http://edamontology.org/data_1525,Protein crystallizability, -http://edamontology.org/data_1526,Protein globularity, -http://edamontology.org/data_1527,Protein titration curve, -http://edamontology.org/data_1528,Protein isoelectric point, -http://edamontology.org/data_1529,Protein pKa value, -http://edamontology.org/data_1530,Protein hydrogen exchange rate, -http://edamontology.org/data_1531,Protein extinction coefficient, -http://edamontology.org/data_1532,Protein optical density, -http://edamontology.org/data_1533,Protein subcellular localisation, -http://edamontology.org/data_1534,Peptide immunogenicity data, -http://edamontology.org/data_1536,MHC peptide immunogenicity report, -http://edamontology.org/data_1537,Protein structure report, -http://edamontology.org/data_1539,Protein structural quality report, -http://edamontology.org/data_1540,Protein non-covalent interactions report, -http://edamontology.org/data_1541,Protein flexibility or motion report, -http://edamontology.org/data_1542,Protein solvent accessibility, -http://edamontology.org/data_1543,Protein surface report, -http://edamontology.org/data_1544,Ramachandran plot, -http://edamontology.org/data_1545,Protein dipole moment, -http://edamontology.org/data_1546,Protein distance matrix, -http://edamontology.org/data_1547,Protein contact map, -http://edamontology.org/data_1548,Protein residue 3D cluster, -http://edamontology.org/data_1549,Protein hydrogen bonds, -http://edamontology.org/data_1550,Protein non-canonical interactions, -http://edamontology.org/data_1553,CATH node, -http://edamontology.org/data_1554,SCOP node, -http://edamontology.org/data_1555,EMBASSY domain classification, -http://edamontology.org/data_1556,CATH class, -http://edamontology.org/data_1557,CATH architecture, -http://edamontology.org/data_1558,CATH topology, -http://edamontology.org/data_1559,CATH homologous superfamily, -http://edamontology.org/data_1560,CATH structurally similar group, -http://edamontology.org/data_1561,CATH functional category, -http://edamontology.org/data_1564,Protein fold recognition report, -http://edamontology.org/data_1565,Protein-protein interaction report, -http://edamontology.org/data_1566,Protein-ligand interaction report, -http://edamontology.org/data_1567,Protein-nucleic acid interactions report, -http://edamontology.org/data_1583,Nucleic acid melting profile, -http://edamontology.org/data_1584,Nucleic acid enthalpy, -http://edamontology.org/data_1585,Nucleic acid entropy, -http://edamontology.org/data_1586,Nucleic acid melting temperature, -http://edamontology.org/data_1587,Nucleic acid stitch profile, -http://edamontology.org/data_1588,DNA base pair stacking energies data, -http://edamontology.org/data_1589,DNA base pair twist angle data, -http://edamontology.org/data_1590,DNA base trimer roll angles data, -http://edamontology.org/data_1591,Vienna RNA parameters, -http://edamontology.org/data_1592,Vienna RNA structure constraints, -http://edamontology.org/data_1593,Vienna RNA concentration data, -http://edamontology.org/data_1594,Vienna RNA calculated energy, -http://edamontology.org/data_1595,Base pairing probability matrix dotplot, -http://edamontology.org/data_1596,Nucleic acid folding report, -http://edamontology.org/data_1597,Codon usage table, -http://edamontology.org/data_1598,Genetic code, -http://edamontology.org/data_1599,Codon adaptation index, -http://edamontology.org/data_1600,Codon usage bias plot, -http://edamontology.org/data_1601,Nc statistic, -http://edamontology.org/data_1602,Codon usage fraction difference, -http://edamontology.org/data_1621,Pharmacogenomic test report, -http://edamontology.org/data_1622,Disease report, -http://edamontology.org/data_1634,Linkage disequilibrium (report), -http://edamontology.org/data_1636,Heat map, -http://edamontology.org/data_1642,Affymetrix probe sets library file, -http://edamontology.org/data_1643,Affymetrix probe sets information library file, -http://edamontology.org/data_1646,Molecular weights standard fingerprint, -http://edamontology.org/data_1656,Metabolic pathway report, -http://edamontology.org/data_1657,Genetic information processing pathway report, -http://edamontology.org/data_1658,Environmental information processing pathway report, -http://edamontology.org/data_1659,Signal transduction pathway report, -http://edamontology.org/data_1660,Cellular process pathways report, -http://edamontology.org/data_1661,Disease pathway or network report, -http://edamontology.org/data_1662,Drug structure relationship map, -http://edamontology.org/data_1663,Protein interaction networks, -http://edamontology.org/data_1664,MIRIAM datatype, -http://edamontology.org/data_1667,E-value, -http://edamontology.org/data_1668,Z-value, -http://edamontology.org/data_1669,P-value, -http://edamontology.org/data_1670,Database version information, -http://edamontology.org/data_1671,Tool version information, -http://edamontology.org/data_1672,CATH version information, -http://edamontology.org/data_1673,Swiss-Prot to PDB mapping, -http://edamontology.org/data_1674,Sequence database cross-references, -http://edamontology.org/data_1675,Job status, -http://edamontology.org/data_1676,Job ID, -http://edamontology.org/data_1677,Job type, -http://edamontology.org/data_1678,Tool log, -http://edamontology.org/data_1679,DaliLite log file, -http://edamontology.org/data_1680,STRIDE log file, -http://edamontology.org/data_1681,NACCESS log file, -http://edamontology.org/data_1682,EMBOSS wordfinder log file, -http://edamontology.org/data_1683,EMBOSS domainatrix log file, -http://edamontology.org/data_1684,EMBOSS sites log file, -http://edamontology.org/data_1685,EMBOSS supermatcher error file, -http://edamontology.org/data_1686,EMBOSS megamerger log file, -http://edamontology.org/data_1687,EMBOSS whichdb log file, -http://edamontology.org/data_1688,EMBOSS vectorstrip log file, -http://edamontology.org/data_1689,Username, -http://edamontology.org/data_1690,Password, -http://edamontology.org/data_1691,Email address, -http://edamontology.org/data_1692,Person name, -http://edamontology.org/data_1693,Number of iterations, -http://edamontology.org/data_1694,Number of output entities, -http://edamontology.org/data_1695,Hit sort order, -http://edamontology.org/data_1696,Drug report, -http://edamontology.org/data_1707,Phylogenetic tree image, -http://edamontology.org/data_1708,RNA secondary structure image, -http://edamontology.org/data_1709,Protein secondary structure image, -http://edamontology.org/data_1710,Structure image, -http://edamontology.org/data_1711,Sequence alignment image, -http://edamontology.org/data_1712,Chemical structure image, -http://edamontology.org/data_1713,Fate map, -http://edamontology.org/data_1714,Microarray spots image, -http://edamontology.org/data_1715,BioPax term, -http://edamontology.org/data_1716,GO, -http://edamontology.org/data_1717,MeSH, -http://edamontology.org/data_1718,HGNC, -http://edamontology.org/data_1719,NCBI taxonomy vocabulary, -http://edamontology.org/data_1720,Plant ontology term, -http://edamontology.org/data_1721,UMLS, -http://edamontology.org/data_1722,FMA, -http://edamontology.org/data_1723,EMAP, -http://edamontology.org/data_1724,ChEBI, -http://edamontology.org/data_1725,MGED, -http://edamontology.org/data_1726,myGrid, -http://edamontology.org/data_1727,GO (biological process), -http://edamontology.org/data_1728,GO (molecular function), -http://edamontology.org/data_1729,GO (cellular component), -http://edamontology.org/data_1730,Ontology relation type, -http://edamontology.org/data_1731,Ontology concept definition, -http://edamontology.org/data_1732,Ontology concept comment, -http://edamontology.org/data_1733,Ontology concept reference, -http://edamontology.org/data_1738,doc2loc document information, -http://edamontology.org/data_1742,PDB residue number, -http://edamontology.org/data_1743,Atomic coordinate, -http://edamontology.org/data_1744,Atomic x coordinate, -http://edamontology.org/data_1745,Atomic y coordinate, -http://edamontology.org/data_1746,Atomic z coordinate, -http://edamontology.org/data_1748,PDB atom name, -http://edamontology.org/data_1755,Protein atom, -http://edamontology.org/data_1756,Protein residue, -http://edamontology.org/data_1757,Atom name, -http://edamontology.org/data_1758,PDB residue name, -http://edamontology.org/data_1759,PDB model number, -http://edamontology.org/data_1762,CATH domain report, -http://edamontology.org/data_1764,CATH representative domain sequences (ATOM), -http://edamontology.org/data_1765,CATH representative domain sequences (COMBS), -http://edamontology.org/data_1766,CATH domain sequences (ATOM), -http://edamontology.org/data_1767,CATH domain sequences (COMBS), -http://edamontology.org/data_1771,Sequence version, -http://edamontology.org/data_1772,Score, -http://edamontology.org/data_1776,Protein report (function), -http://edamontology.org/data_1783,Gene name (ASPGD), -http://edamontology.org/data_1784,Gene name (CGD), -http://edamontology.org/data_1785,Gene name (dictyBase), -http://edamontology.org/data_1786,Gene name (EcoGene primary), -http://edamontology.org/data_1787,Gene name (MaizeGDB), -http://edamontology.org/data_1788,Gene name (SGD), -http://edamontology.org/data_1789,Gene name (TGD), -http://edamontology.org/data_1790,Gene name (CGSC), -http://edamontology.org/data_1791,Gene name (HGNC), -http://edamontology.org/data_1792,Gene name (MGD), -http://edamontology.org/data_1793,Gene name (Bacillus subtilis), -http://edamontology.org/data_1794,Gene ID (PlasmoDB), -http://edamontology.org/data_1795,Gene ID (EcoGene), -http://edamontology.org/data_1796,Gene ID (FlyBase), -http://edamontology.org/data_1797,Gene ID (GeneDB Glossina morsitans), -http://edamontology.org/data_1798,Gene ID (GeneDB Leishmania major), -http://edamontology.org/data_1799,Gene ID (GeneDB Plasmodium falciparum), -http://edamontology.org/data_1800,Gene ID (GeneDB Schizosaccharomyces pombe), -http://edamontology.org/data_1801,Gene ID (GeneDB Trypanosoma brucei), -http://edamontology.org/data_1802,Gene ID (Gramene), -http://edamontology.org/data_1803,Gene ID (Virginia microbial), -http://edamontology.org/data_1804,Gene ID (SGN), -http://edamontology.org/data_1805,Gene ID (WormBase), -http://edamontology.org/data_1806,Gene synonym, -http://edamontology.org/data_1807,ORF name, -http://edamontology.org/data_1852,Sequence assembly component, -http://edamontology.org/data_1853,Chromosome annotation (aberration), -http://edamontology.org/data_1855,Clone ID, -http://edamontology.org/data_1856,PDB insertion code, -http://edamontology.org/data_1857,Atomic occupancy, -http://edamontology.org/data_1858,Isotropic B factor, -http://edamontology.org/data_1859,Deletion map, -http://edamontology.org/data_1860,QTL map, -http://edamontology.org/data_1863,Haplotype map, -http://edamontology.org/data_1864,Map set data, -http://edamontology.org/data_1865,Map feature, -http://edamontology.org/data_1866,Map type, -http://edamontology.org/data_1867,Protein fold name, -http://edamontology.org/data_1868,Taxon, -http://edamontology.org/data_1869,Organism identifier, -http://edamontology.org/data_1870,Genus name, -http://edamontology.org/data_1872,Taxonomic classification, -http://edamontology.org/data_1873,iHOP organism ID, -http://edamontology.org/data_1874,Genbank common name, -http://edamontology.org/data_1875,NCBI taxon, -http://edamontology.org/data_1877,Synonym, -http://edamontology.org/data_1878,Misspelling, -http://edamontology.org/data_1879,Acronym, -http://edamontology.org/data_1880,Misnomer, -http://edamontology.org/data_1881,Author ID, -http://edamontology.org/data_1882,DragonDB author identifier, -http://edamontology.org/data_1883,Annotated URI, -http://edamontology.org/data_1884,UniProt keywords, -http://edamontology.org/data_1885,Gene ID (GeneFarm), -http://edamontology.org/data_1886,Blattner number, -http://edamontology.org/data_1887,Gene ID (MIPS Maize), -http://edamontology.org/data_1888,Gene ID (MIPS Medicago), -http://edamontology.org/data_1889,Gene name (DragonDB), -http://edamontology.org/data_1890,Gene name (Arabidopsis), -http://edamontology.org/data_1891,iHOP symbol, -http://edamontology.org/data_1892,Gene name (GeneFarm), -http://edamontology.org/data_1893,Locus ID, -http://edamontology.org/data_1895,Locus ID (AGI), -http://edamontology.org/data_1896,Locus ID (ASPGD), -http://edamontology.org/data_1897,Locus ID (MGG), -http://edamontology.org/data_1898,Locus ID (CGD), -http://edamontology.org/data_1899,Locus ID (CMR), -http://edamontology.org/data_1900,NCBI locus tag, -http://edamontology.org/data_1901,Locus ID (SGD), -http://edamontology.org/data_1902,Locus ID (MMP), -http://edamontology.org/data_1903,Locus ID (DictyBase), -http://edamontology.org/data_1904,Locus ID (EntrezGene), -http://edamontology.org/data_1905,Locus ID (MaizeGDB), -http://edamontology.org/data_1906,Quantitative trait locus, -http://edamontology.org/data_1907,Gene ID (KOME), -http://edamontology.org/data_1908,Locus ID (Tropgene), -http://edamontology.org/data_1916,Alignment, -http://edamontology.org/data_1917,Atomic property, -http://edamontology.org/data_2007,UniProt keyword, -http://edamontology.org/data_2009,Ordered locus name, -http://edamontology.org/data_2012,Sequence coordinates, -http://edamontology.org/data_2016,Amino acid property, -http://edamontology.org/data_2018,Annotation, -http://edamontology.org/data_2019,Map data, -http://edamontology.org/data_2022,Vienna RNA structural data, -http://edamontology.org/data_2023,Sequence mask parameter, -http://edamontology.org/data_2024,Enzyme kinetics data, -http://edamontology.org/data_2025,Michaelis Menten plot, -http://edamontology.org/data_2026,Hanes Woolf plot, -http://edamontology.org/data_2028,Experimental data, -http://edamontology.org/data_2041,Genome version information, -http://edamontology.org/data_2042,Evidence, -http://edamontology.org/data_2043,Sequence record lite, -http://edamontology.org/data_2044,Sequence, -http://edamontology.org/data_2046,Nucleic acid sequence record (lite), -http://edamontology.org/data_2047,Protein sequence record (lite), -http://edamontology.org/data_2048,Report, -http://edamontology.org/data_2050,Molecular property (general), -http://edamontology.org/data_2053,Structural data, -http://edamontology.org/data_2070,Sequence motif (nucleic acid), -http://edamontology.org/data_2071,Sequence motif (protein), -http://edamontology.org/data_2079,Search parameter, -http://edamontology.org/data_2080,Database search results, -http://edamontology.org/data_2081,Secondary structure, -http://edamontology.org/data_2082,Matrix, -http://edamontology.org/data_2083,Alignment data, -http://edamontology.org/data_2084,Nucleic acid report, -http://edamontology.org/data_2085,Structure report, -http://edamontology.org/data_2086,Nucleic acid structure data, -http://edamontology.org/data_2087,Molecular property, -http://edamontology.org/data_2088,DNA base structural data, -http://edamontology.org/data_2090,Database entry version information, -http://edamontology.org/data_2091,Accession, -http://edamontology.org/data_2092,SNP, -http://edamontology.org/data_2093,Data reference, -http://edamontology.org/data_2098,Job identifier, -http://edamontology.org/data_2099,Name, -http://edamontology.org/data_2100,Type, -http://edamontology.org/data_2101,User ID, -http://edamontology.org/data_2102,KEGG organism code, -http://edamontology.org/data_2103,Gene name (KEGG GENES), -http://edamontology.org/data_2104,BioCyc ID, -http://edamontology.org/data_2105,Compound ID (BioCyc), -http://edamontology.org/data_2106,Reaction ID (BioCyc), -http://edamontology.org/data_2107,Enzyme ID (BioCyc), -http://edamontology.org/data_2108,Reaction ID, -http://edamontology.org/data_2109,Identifier (hybrid), -http://edamontology.org/data_2110,Molecular property identifier, -http://edamontology.org/data_2111,Codon usage table ID, -http://edamontology.org/data_2112,FlyBase primary identifier, -http://edamontology.org/data_2113,WormBase identifier, -http://edamontology.org/data_2114,WormBase wormpep ID, -http://edamontology.org/data_2116,Nucleic acid features (codon), -http://edamontology.org/data_2117,Map identifier, -http://edamontology.org/data_2118,Person identifier, -http://edamontology.org/data_2119,Nucleic acid identifier, -http://edamontology.org/data_2126,Translation frame specification, -http://edamontology.org/data_2127,Genetic code identifier, -http://edamontology.org/data_2128,Genetic code name, -http://edamontology.org/data_2129,File format name, -http://edamontology.org/data_2130,Sequence profile type, -http://edamontology.org/data_2131,Operating system name, -http://edamontology.org/data_2132,Mutation type, -http://edamontology.org/data_2133,Logical operator, -http://edamontology.org/data_2134,Results sort order, -http://edamontology.org/data_2135,Toggle, -http://edamontology.org/data_2136,Sequence width, -http://edamontology.org/data_2137,Gap penalty, -http://edamontology.org/data_2139,Nucleic acid melting temperature, -http://edamontology.org/data_2140,Concentration, -http://edamontology.org/data_2141,Window step size, -http://edamontology.org/data_2142,EMBOSS graph, -http://edamontology.org/data_2143,EMBOSS report, -http://edamontology.org/data_2145,Sequence offset, -http://edamontology.org/data_2146,Threshold, -http://edamontology.org/data_2147,Protein report (transcription factor), -http://edamontology.org/data_2149,Database category name, -http://edamontology.org/data_2150,Sequence profile name, -http://edamontology.org/data_2151,Color, -http://edamontology.org/data_2152,Rendering parameter, -http://edamontology.org/data_2154,Sequence name, -http://edamontology.org/data_2156,Date, -http://edamontology.org/data_2157,Word composition, -http://edamontology.org/data_2160,Fickett testcode plot, -http://edamontology.org/data_2161,Sequence similarity plot, -http://edamontology.org/data_2162,Helical wheel, -http://edamontology.org/data_2163,Helical net, -http://edamontology.org/data_2164,Protein sequence properties plot, -http://edamontology.org/data_2165,Protein ionisation curve, -http://edamontology.org/data_2166,Sequence composition plot, -http://edamontology.org/data_2167,Nucleic acid density plot, -http://edamontology.org/data_2168,Sequence trace image, -http://edamontology.org/data_2169,Nucleic acid features (siRNA), -http://edamontology.org/data_2173,Sequence set (stream), -http://edamontology.org/data_2174,FlyBase secondary identifier, -http://edamontology.org/data_2176,Cardinality, -http://edamontology.org/data_2177,Exactly 1, -http://edamontology.org/data_2178,1 or more, -http://edamontology.org/data_2179,Exactly 2, -http://edamontology.org/data_2180,2 or more, -http://edamontology.org/data_2190,Sequence checksum, -http://edamontology.org/data_2191,Protein features report (chemical modifications), -http://edamontology.org/data_2192,Error, -http://edamontology.org/data_2193,Database entry metadata, -http://edamontology.org/data_2198,Gene cluster, -http://edamontology.org/data_2201,Sequence record full, -http://edamontology.org/data_2208,Plasmid identifier, -http://edamontology.org/data_2209,Mutation ID, -http://edamontology.org/data_2212,Mutation annotation (basic), -http://edamontology.org/data_2213,Mutation annotation (prevalence), -http://edamontology.org/data_2214,Mutation annotation (prognostic), -http://edamontology.org/data_2215,Mutation annotation (functional), -http://edamontology.org/data_2216,Codon number, -http://edamontology.org/data_2217,Tumor annotation, -http://edamontology.org/data_2218,Server metadata, -http://edamontology.org/data_2219,Database field name, -http://edamontology.org/data_2220,Sequence cluster ID (SYSTERS), -http://edamontology.org/data_2223,Ontology metadata, -http://edamontology.org/data_2235,Raw SCOP domain classification, -http://edamontology.org/data_2236,Raw CATH domain classification, -http://edamontology.org/data_2240,Heterogen annotation, -http://edamontology.org/data_2242,Phylogenetic property values, -http://edamontology.org/data_2245,Sequence set (bootstrapped), -http://edamontology.org/data_2247,Phylogenetic consensus tree, -http://edamontology.org/data_2248,Schema, -http://edamontology.org/data_2249,DTD, -http://edamontology.org/data_2250,XML Schema, -http://edamontology.org/data_2251,Relax-NG schema, -http://edamontology.org/data_2252,XSLT stylesheet, -http://edamontology.org/data_2253,Data resource definition name, -http://edamontology.org/data_2254,OBO file format name, -http://edamontology.org/data_2285,Gene ID (MIPS), -http://edamontology.org/data_2288,Sequence identifier (protein), -http://edamontology.org/data_2289,Sequence identifier (nucleic acid), -http://edamontology.org/data_2290,EMBL accession, -http://edamontology.org/data_2291,UniProt ID, -http://edamontology.org/data_2292,GenBank accession, -http://edamontology.org/data_2293,Gramene secondary identifier, -http://edamontology.org/data_2294,Sequence variation ID, -http://edamontology.org/data_2295,Gene ID, -http://edamontology.org/data_2296,Gene name (AceView), -http://edamontology.org/data_2297,Gene ID (ECK), -http://edamontology.org/data_2298,Gene ID (HGNC), -http://edamontology.org/data_2299,Gene name, -http://edamontology.org/data_2300,Gene name (NCBI), -http://edamontology.org/data_2301,SMILES string, -http://edamontology.org/data_2302,STRING ID, -http://edamontology.org/data_2307,Virus annotation, -http://edamontology.org/data_2308,Virus annotation (taxonomy), -http://edamontology.org/data_2309,Reaction ID (SABIO-RK), -http://edamontology.org/data_2313,Carbohydrate report, -http://edamontology.org/data_2314,GI number, -http://edamontology.org/data_2315,NCBI version, -http://edamontology.org/data_2316,Cell line name, -http://edamontology.org/data_2317,Cell line name (exact), -http://edamontology.org/data_2318,Cell line name (truncated), -http://edamontology.org/data_2319,Cell line name (no punctuation), -http://edamontology.org/data_2320,Cell line name (assonant), -http://edamontology.org/data_2321,Enzyme ID, -http://edamontology.org/data_2325,REBASE enzyme number, -http://edamontology.org/data_2326,DrugBank ID, -http://edamontology.org/data_2327,GI number (protein), -http://edamontology.org/data_2335,Bit score, -http://edamontology.org/data_2336,Translation phase specification, -http://edamontology.org/data_2337,Resource metadata, -http://edamontology.org/data_2338,Ontology identifier, -http://edamontology.org/data_2339,Ontology concept name, -http://edamontology.org/data_2340,Genome build identifier, -http://edamontology.org/data_2342,Pathway or network name, -http://edamontology.org/data_2343,Pathway ID (KEGG), -http://edamontology.org/data_2344,Pathway ID (NCI-Nature), -http://edamontology.org/data_2345,Pathway ID (ConsensusPathDB), -http://edamontology.org/data_2346,Sequence cluster ID (UniRef), -http://edamontology.org/data_2347,Sequence cluster ID (UniRef100), -http://edamontology.org/data_2348,Sequence cluster ID (UniRef90), -http://edamontology.org/data_2349,Sequence cluster ID (UniRef50), -http://edamontology.org/data_2353,Ontology data, -http://edamontology.org/data_2354,RNA family report, -http://edamontology.org/data_2355,RNA family identifier, -http://edamontology.org/data_2356,RFAM accession, -http://edamontology.org/data_2357,Protein signature type, -http://edamontology.org/data_2358,Domain-nucleic acid interaction report, -http://edamontology.org/data_2359,Domain-domain interactions, -http://edamontology.org/data_2360,Domain-domain interaction (indirect), -http://edamontology.org/data_2362,Sequence accession (hybrid), -http://edamontology.org/data_2363,2D PAGE data, -http://edamontology.org/data_2364,2D PAGE report, -http://edamontology.org/data_2365,Pathway or network accession, -http://edamontology.org/data_2366,Secondary structure alignment, -http://edamontology.org/data_2367,ASTD ID, -http://edamontology.org/data_2368,ASTD ID (exon), -http://edamontology.org/data_2369,ASTD ID (intron), -http://edamontology.org/data_2370,ASTD ID (polya), -http://edamontology.org/data_2371,ASTD ID (tss), -http://edamontology.org/data_2372,2D PAGE spot report, -http://edamontology.org/data_2373,Spot ID, -http://edamontology.org/data_2374,Spot serial number, -http://edamontology.org/data_2375,Spot ID (HSC-2DPAGE), -http://edamontology.org/data_2378,Protein-motif interaction, -http://edamontology.org/data_2379,Strain identifier, -http://edamontology.org/data_2380,CABRI accession, -http://edamontology.org/data_2381,Experiment report (genotyping), -http://edamontology.org/data_2382,Genotype experiment ID, -http://edamontology.org/data_2383,EGA accession, -http://edamontology.org/data_2384,IPI protein ID, -http://edamontology.org/data_2385,RefSeq accession (protein), -http://edamontology.org/data_2386,EPD ID, -http://edamontology.org/data_2387,TAIR accession, -http://edamontology.org/data_2388,TAIR accession (At gene), -http://edamontology.org/data_2389,UniSTS accession, -http://edamontology.org/data_2390,UNITE accession, -http://edamontology.org/data_2391,UTR accession, -http://edamontology.org/data_2392,UniParc accession, -http://edamontology.org/data_2393,mFLJ/mKIAA number, -http://edamontology.org/data_2395,Fungi annotation, -http://edamontology.org/data_2396,Fungi annotation (anamorph), -http://edamontology.org/data_2398,Ensembl protein ID, -http://edamontology.org/data_2400,Toxin annotation, -http://edamontology.org/data_2401,Protein report (membrane protein), -http://edamontology.org/data_2402,Protein-drug interaction report, -http://edamontology.org/data_2522,Map data, -http://edamontology.org/data_2523,Phylogenetic data, -http://edamontology.org/data_2524,Protein data, -http://edamontology.org/data_2525,Nucleic acid data, -http://edamontology.org/data_2526,Text data, -http://edamontology.org/data_2527,Parameter, -http://edamontology.org/data_2528,Molecular data, -http://edamontology.org/data_2529,Molecule report, -http://edamontology.org/data_2530,Organism report, -http://edamontology.org/data_2531,Protocol, -http://edamontology.org/data_2534,Sequence attribute, -http://edamontology.org/data_2535,Sequence tag profile, -http://edamontology.org/data_2536,Mass spectrometry data, -http://edamontology.org/data_2537,Protein structure raw data, -http://edamontology.org/data_2538,Mutation identifier, -http://edamontology.org/data_2539,Alignment data, -http://edamontology.org/data_2540,Data index data, -http://edamontology.org/data_2563,Amino acid name (single letter), -http://edamontology.org/data_2564,Amino acid name (three letter), -http://edamontology.org/data_2565,Amino acid name (full name), -http://edamontology.org/data_2576,Toxin identifier, -http://edamontology.org/data_2578,ArachnoServer ID, -http://edamontology.org/data_2579,Expressed gene list, -http://edamontology.org/data_2580,BindingDB Monomer ID, -http://edamontology.org/data_2581,GO concept name, -http://edamontology.org/data_2582,GO concept ID (biological process), -http://edamontology.org/data_2583,GO concept ID (molecular function), -http://edamontology.org/data_2584,GO concept name (cellular component), -http://edamontology.org/data_2586,Northern blot image, -http://edamontology.org/data_2587,Blot ID, -http://edamontology.org/data_2588,BlotBase blot ID, -http://edamontology.org/data_2589,Hierarchy, -http://edamontology.org/data_2590,Hierarchy identifier, -http://edamontology.org/data_2591,Brite hierarchy ID, -http://edamontology.org/data_2592,Cancer type, -http://edamontology.org/data_2593,BRENDA organism ID, -http://edamontology.org/data_2594,UniGene taxon, -http://edamontology.org/data_2595,UTRdb taxon, -http://edamontology.org/data_2596,Catalogue ID, -http://edamontology.org/data_2597,CABRI catalogue name, -http://edamontology.org/data_2598,Secondary structure alignment metadata, -http://edamontology.org/data_2599,Molecule interaction report, -http://edamontology.org/data_2600,Pathway or network, -http://edamontology.org/data_2601,Small molecule data, -http://edamontology.org/data_2602,Genotype and phenotype data, -http://edamontology.org/data_2603,Expression data, -http://edamontology.org/data_2605,Compound ID (KEGG), -http://edamontology.org/data_2606,RFAM name, -http://edamontology.org/data_2608,Reaction ID (KEGG), -http://edamontology.org/data_2609,Drug ID (KEGG), -http://edamontology.org/data_2610,Ensembl ID, -http://edamontology.org/data_2611,ICD identifier, -http://edamontology.org/data_2612,Sequence cluster ID (CluSTr), -http://edamontology.org/data_2613,KEGG Glycan ID, -http://edamontology.org/data_2614,TCDB ID, -http://edamontology.org/data_2615,MINT ID, -http://edamontology.org/data_2616,DIP ID, -http://edamontology.org/data_2617,Signaling Gateway protein ID, -http://edamontology.org/data_2618,Protein modification ID, -http://edamontology.org/data_2619,RESID ID, -http://edamontology.org/data_2620,RGD ID, -http://edamontology.org/data_2621,TAIR accession (protein), -http://edamontology.org/data_2622,Compound ID (HMDB), -http://edamontology.org/data_2625,LIPID MAPS ID, -http://edamontology.org/data_2626,PeptideAtlas ID, -http://edamontology.org/data_2627,Molecular interaction ID, -http://edamontology.org/data_2628,BioGRID interaction ID, -http://edamontology.org/data_2629,Enzyme ID (MEROPS), -http://edamontology.org/data_2630,Mobile genetic element ID, -http://edamontology.org/data_2631,ACLAME ID, -http://edamontology.org/data_2632,SGD ID, -http://edamontology.org/data_2633,Book ID, -http://edamontology.org/data_2634,ISBN, -http://edamontology.org/data_2635,Compound ID (3DMET), -http://edamontology.org/data_2636,MatrixDB interaction ID, -http://edamontology.org/data_2637,cPath ID, -http://edamontology.org/data_2638,PubChem bioassay ID, -http://edamontology.org/data_2639,PubChem ID, -http://edamontology.org/data_2641,Reaction ID (MACie), -http://edamontology.org/data_2642,Gene ID (miRBase), -http://edamontology.org/data_2643,Gene ID (ZFIN), -http://edamontology.org/data_2644,Reaction ID (Rhea), -http://edamontology.org/data_2645,Pathway ID (Unipathway), -http://edamontology.org/data_2646,Compound ID (ChEMBL), -http://edamontology.org/data_2647,LGICdb identifier, -http://edamontology.org/data_2648,Reaction kinetics ID (SABIO-RK), -http://edamontology.org/data_2649,PharmGKB ID, -http://edamontology.org/data_2650,Pathway ID (PharmGKB), -http://edamontology.org/data_2651,Disease ID (PharmGKB), -http://edamontology.org/data_2652,Drug ID (PharmGKB), -http://edamontology.org/data_2653,Drug ID (TTD), -http://edamontology.org/data_2654,Target ID (TTD), -http://edamontology.org/data_2655,Cell type identifier, -http://edamontology.org/data_2656,NeuronDB ID, -http://edamontology.org/data_2657,NeuroMorpho ID, -http://edamontology.org/data_2658,Compound ID (ChemIDplus), -http://edamontology.org/data_2659,Pathway ID (SMPDB), -http://edamontology.org/data_2660,BioNumbers ID, -http://edamontology.org/data_2662,T3DB ID, -http://edamontology.org/data_2663,Carbohydrate identifier, -http://edamontology.org/data_2664,GlycomeDB ID, -http://edamontology.org/data_2665,LipidBank ID, -http://edamontology.org/data_2666,CDD ID, -http://edamontology.org/data_2667,MMDB ID, -http://edamontology.org/data_2668,iRefIndex ID, -http://edamontology.org/data_2669,ModelDB ID, -http://edamontology.org/data_2670,Pathway ID (DQCS), -http://edamontology.org/data_2671,Ensembl ID (Homo sapiens), -http://edamontology.org/data_2672,Ensembl ID ('Bos taurus'), -http://edamontology.org/data_2673,Ensembl ID ('Canis familiaris'), -http://edamontology.org/data_2674,Ensembl ID ('Cavia porcellus'), -http://edamontology.org/data_2675,Ensembl ID ('Ciona intestinalis'), -http://edamontology.org/data_2676,Ensembl ID ('Ciona savignyi'), -http://edamontology.org/data_2677,Ensembl ID ('Danio rerio'), -http://edamontology.org/data_2678,Ensembl ID ('Dasypus novemcinctus'), -http://edamontology.org/data_2679,Ensembl ID ('Echinops telfairi'), -http://edamontology.org/data_2680,Ensembl ID ('Erinaceus europaeus'), -http://edamontology.org/data_2681,Ensembl ID ('Felis catus'), -http://edamontology.org/data_2682,Ensembl ID ('Gallus gallus'), -http://edamontology.org/data_2683,Ensembl ID ('Gasterosteus aculeatus'), -http://edamontology.org/data_2684,Ensembl ID ('Homo sapiens'), -http://edamontology.org/data_2685,Ensembl ID ('Loxodonta africana'), -http://edamontology.org/data_2686,Ensembl ID ('Macaca mulatta'), -http://edamontology.org/data_2687,Ensembl ID ('Monodelphis domestica'), -http://edamontology.org/data_2688,Ensembl ID ('Mus musculus'), -http://edamontology.org/data_2689,Ensembl ID ('Myotis lucifugus'), -http://edamontology.org/data_2690,"Ensembl ID (""Ornithorhynchus anatinus\"")", -http://edamontology.org/data_2691,Ensembl ID ('Oryctolagus cuniculus'), -http://edamontology.org/data_2692,Ensembl ID ('Oryzias latipes'), -http://edamontology.org/data_2693,Ensembl ID ('Otolemur garnettii'), -http://edamontology.org/data_2694,Ensembl ID ('Pan troglodytes'), -http://edamontology.org/data_2695,Ensembl ID ('Rattus norvegicus'), -http://edamontology.org/data_2696,Ensembl ID ('Spermophilus tridecemlineatus'), -http://edamontology.org/data_2697,Ensembl ID ('Takifugu rubripes'), -http://edamontology.org/data_2698,Ensembl ID ('Tupaia belangeri'), -http://edamontology.org/data_2699,Ensembl ID ('Xenopus tropicalis'), -http://edamontology.org/data_2700,CATH identifier, -http://edamontology.org/data_2701,CATH node ID (family), -http://edamontology.org/data_2702,Enzyme ID (CAZy), -http://edamontology.org/data_2704,Clone ID (IMAGE), -http://edamontology.org/data_2705,GO concept ID (cellular component), -http://edamontology.org/data_2706,Chromosome name (BioCyc), -http://edamontology.org/data_2709,CleanEx entry name, -http://edamontology.org/data_2710,CleanEx dataset code, -http://edamontology.org/data_2711,Genome report, -http://edamontology.org/data_2713,Protein ID (CORUM), -http://edamontology.org/data_2714,CDD PSSM-ID, -http://edamontology.org/data_2715,Protein ID (CuticleDB), -http://edamontology.org/data_2716,DBD ID, -http://edamontology.org/data_2717,Oligonucleotide probe annotation, -http://edamontology.org/data_2718,Oligonucleotide ID, -http://edamontology.org/data_2719,dbProbe ID, -http://edamontology.org/data_2720,Dinucleotide property, -http://edamontology.org/data_2721,DiProDB ID, -http://edamontology.org/data_2722,Protein features report (disordered structure), -http://edamontology.org/data_2723,Protein ID (DisProt), -http://edamontology.org/data_2724,Embryo report, -http://edamontology.org/data_2725,Ensembl transcript ID, -http://edamontology.org/data_2726,Inhibitor annotation, -http://edamontology.org/data_2727,Promoter ID, -http://edamontology.org/data_2728,EST accession, -http://edamontology.org/data_2729,COGEME EST ID, -http://edamontology.org/data_2730,COGEME unisequence ID, -http://edamontology.org/data_2731,Protein family ID (GeneFarm), -http://edamontology.org/data_2732,Family name, -http://edamontology.org/data_2733,Genus name (virus), -http://edamontology.org/data_2734,Family name (virus), -http://edamontology.org/data_2735,Database name (SwissRegulon), -http://edamontology.org/data_2736,Sequence feature ID (SwissRegulon), -http://edamontology.org/data_2737,FIG ID, -http://edamontology.org/data_2738,Gene ID (Xenbase), -http://edamontology.org/data_2739,Gene ID (Genolist), -http://edamontology.org/data_2740,Gene name (Genolist), -http://edamontology.org/data_2741,ABS ID, -http://edamontology.org/data_2742,AraC-XylS ID, -http://edamontology.org/data_2743,Gene name (HUGO), -http://edamontology.org/data_2744,Locus ID (PseudoCAP), -http://edamontology.org/data_2745,Locus ID (UTR), -http://edamontology.org/data_2746,MonosaccharideDB ID, -http://edamontology.org/data_2747,Database name (CMD), -http://edamontology.org/data_2748,Database name (Osteogenesis), -http://edamontology.org/data_2749,Genome identifier, -http://edamontology.org/data_2751,GenomeReviews ID, -http://edamontology.org/data_2752,GlycoMap ID, -http://edamontology.org/data_2753,Carbohydrate conformational map, -http://edamontology.org/data_2755,Transcription factor name, -http://edamontology.org/data_2756,TCID, -http://edamontology.org/data_2757,Pfam domain name, -http://edamontology.org/data_2758,Pfam clan ID, -http://edamontology.org/data_2759,Gene ID (VectorBase), -http://edamontology.org/data_2761,UTRSite ID, -http://edamontology.org/data_2762,Sequence signature report, -http://edamontology.org/data_2763,Locus annotation, -http://edamontology.org/data_2764,Protein name (UniProt), -http://edamontology.org/data_2765,Term ID list, -http://edamontology.org/data_2766,HAMAP ID, -http://edamontology.org/data_2767,Identifier with metadata, -http://edamontology.org/data_2768,Gene symbol annotation, -http://edamontology.org/data_2769,Transcript ID, -http://edamontology.org/data_2770,HIT ID, -http://edamontology.org/data_2771,HIX ID, -http://edamontology.org/data_2772,HPA antibody id, -http://edamontology.org/data_2773,IMGT/HLA ID, -http://edamontology.org/data_2774,Gene ID (JCVI), -http://edamontology.org/data_2775,Kinase name, -http://edamontology.org/data_2776,ConsensusPathDB entity ID, -http://edamontology.org/data_2777,ConsensusPathDB entity name, -http://edamontology.org/data_2778,CCAP strain number, -http://edamontology.org/data_2779,Stock number, -http://edamontology.org/data_2780,Stock number (TAIR), -http://edamontology.org/data_2781,REDIdb ID, -http://edamontology.org/data_2782,SMART domain name, -http://edamontology.org/data_2783,Protein family ID (PANTHER), -http://edamontology.org/data_2784,RNAVirusDB ID, -http://edamontology.org/data_2785,Virus ID, -http://edamontology.org/data_2786,NCBI Genome Project ID, -http://edamontology.org/data_2787,NCBI genome accession, -http://edamontology.org/data_2788,Sequence profile data, -http://edamontology.org/data_2789,Protein ID (TopDB), -http://edamontology.org/data_2790,Gel ID, -http://edamontology.org/data_2791,Reference map name (SWISS-2DPAGE), -http://edamontology.org/data_2792,Protein ID (PeroxiBase), -http://edamontology.org/data_2793,SISYPHUS ID, -http://edamontology.org/data_2794,ORF ID, -http://edamontology.org/data_2795,ORF identifier, -http://edamontology.org/data_2796,Linucs ID, -http://edamontology.org/data_2797,Protein ID (LGICdb), -http://edamontology.org/data_2798,MaizeDB ID, -http://edamontology.org/data_2799,Gene ID (MfunGD), -http://edamontology.org/data_2800,Orpha number, -http://edamontology.org/data_2802,Protein ID (EcID), -http://edamontology.org/data_2803,Clone ID (RefSeq), -http://edamontology.org/data_2804,Protein ID (ConoServer), -http://edamontology.org/data_2805,GeneSNP ID, -http://edamontology.org/data_2812,Lipid identifier, -http://edamontology.org/data_2831,Databank, -http://edamontology.org/data_2832,Web portal, -http://edamontology.org/data_2835,Gene ID (VBASE2), -http://edamontology.org/data_2836,DPVweb ID, -http://edamontology.org/data_2837,Pathway ID (BioSystems), -http://edamontology.org/data_2838,Experimental data (proteomics), -http://edamontology.org/data_2849,Abstract, -http://edamontology.org/data_2850,Lipid structure, -http://edamontology.org/data_2851,Drug structure, -http://edamontology.org/data_2852,Toxin structure, -http://edamontology.org/data_2854,Position-specific scoring matrix, -http://edamontology.org/data_2855,Distance matrix, -http://edamontology.org/data_2856,Structural distance matrix, -http://edamontology.org/data_2857,Article metadata, -http://edamontology.org/data_2858,Ontology concept, -http://edamontology.org/data_2865,Codon usage bias, -http://edamontology.org/data_2866,Northern blot report, -http://edamontology.org/data_2870,Radiation hybrid map, -http://edamontology.org/data_2872,ID list, -http://edamontology.org/data_2873,Phylogenetic gene frequencies data, -http://edamontology.org/data_2874,Sequence set (polymorphic), -http://edamontology.org/data_2875,DRCAT resource, -http://edamontology.org/data_2877,Protein complex, -http://edamontology.org/data_2878,Protein structural motif, -http://edamontology.org/data_2879,Lipid report, -http://edamontology.org/data_2880,Secondary structure image, -http://edamontology.org/data_2881,Secondary structure report, -http://edamontology.org/data_2882,DNA features, -http://edamontology.org/data_2883,RNA features report, -http://edamontology.org/data_2884,Plot, -http://edamontology.org/data_2886,Protein sequence record, -http://edamontology.org/data_2887,Nucleic acid sequence record, -http://edamontology.org/data_2888,Protein sequence record (full), -http://edamontology.org/data_2889,Nucleic acid sequence record (full), -http://edamontology.org/data_2891,Biological model accession, -http://edamontology.org/data_2892,Cell type name, -http://edamontology.org/data_2893,Cell type accession, -http://edamontology.org/data_2894,Compound accession, -http://edamontology.org/data_2895,Drug accession, -http://edamontology.org/data_2896,Toxin name, -http://edamontology.org/data_2897,Toxin accession, -http://edamontology.org/data_2898,Monosaccharide accession, -http://edamontology.org/data_2899,Drug name, -http://edamontology.org/data_2900,Carbohydrate accession, -http://edamontology.org/data_2901,Molecule accession, -http://edamontology.org/data_2902,Data resource definition accession, -http://edamontology.org/data_2903,Genome accession, -http://edamontology.org/data_2904,Map accession, -http://edamontology.org/data_2905,Lipid accession, -http://edamontology.org/data_2906,Peptide ID, -http://edamontology.org/data_2907,Protein accession, -http://edamontology.org/data_2908,Organism accession, -http://edamontology.org/data_2909,Organism name, -http://edamontology.org/data_2910,Protein family accession, -http://edamontology.org/data_2911,Transcription factor accession, -http://edamontology.org/data_2912,Strain accession, -http://edamontology.org/data_2913,Virus identifier, -http://edamontology.org/data_2914,Sequence features metadata, -http://edamontology.org/data_2915,Gramene identifier, -http://edamontology.org/data_2916,DDBJ accession, -http://edamontology.org/data_2917,ConsensusPathDB identifier, -http://edamontology.org/data_2925,Sequence data, -http://edamontology.org/data_2927,Codon usage, -http://edamontology.org/data_2954,Article report, -http://edamontology.org/data_2955,Sequence report, -http://edamontology.org/data_2956,Protein secondary structure, -http://edamontology.org/data_2957,Hopp and Woods plot, -http://edamontology.org/data_2958,Nucleic acid melting curve, -http://edamontology.org/data_2959,Nucleic acid probability profile, -http://edamontology.org/data_2960,Nucleic acid temperature profile, -http://edamontology.org/data_2961,Gene regulatory network report, -http://edamontology.org/data_2965,2D PAGE gel report, -http://edamontology.org/data_2966,Oligonucleotide probe sets annotation, -http://edamontology.org/data_2967,Microarray image, -http://edamontology.org/data_2968,Image, -http://edamontology.org/data_2969,Sequence image, -http://edamontology.org/data_2970,Protein hydropathy data, -http://edamontology.org/data_2971,Workflow data, -http://edamontology.org/data_2972,Workflow, -http://edamontology.org/data_2973,Secondary structure data, -http://edamontology.org/data_2974,Protein sequence (raw), -http://edamontology.org/data_2975,Nucleic acid sequence (raw), -http://edamontology.org/data_2976,Protein sequence, -http://edamontology.org/data_2977,Nucleic acid sequence, -http://edamontology.org/data_2978,Reaction data, -http://edamontology.org/data_2979,Peptide property, -http://edamontology.org/data_2980,Protein classification, -http://edamontology.org/data_2981,Sequence motif data, -http://edamontology.org/data_2982,Sequence profile data, -http://edamontology.org/data_2983,Pathway or network data, -http://edamontology.org/data_2984,Pathway or network report, -http://edamontology.org/data_2985,Nucleic acid thermodynamic data, -http://edamontology.org/data_2986,Nucleic acid classification, -http://edamontology.org/data_2987,Classification report, -http://edamontology.org/data_2989,Protein features report (key folding sites), -http://edamontology.org/data_2991,Protein geometry data, -http://edamontology.org/data_2992,Protein structure image, -http://edamontology.org/data_2994,Phylogenetic character weights, -http://edamontology.org/data_3002,Annotation track, -http://edamontology.org/data_3021,UniProt accession, -http://edamontology.org/data_3022,NCBI genetic code ID, -http://edamontology.org/data_3025,Ontology concept identifier, -http://edamontology.org/data_3026,GO concept name (biological process), -http://edamontology.org/data_3027,GO concept name (molecular function), -http://edamontology.org/data_3028,Taxonomy, -http://edamontology.org/data_3029,Protein ID (EMBL/GenBank/DDBJ), -http://edamontology.org/data_3031,Core data, -http://edamontology.org/data_3034,Sequence feature identifier, -http://edamontology.org/data_3035,Structure identifier, -http://edamontology.org/data_3036,Matrix identifier, -http://edamontology.org/data_3085,Protein sequence composition, -http://edamontology.org/data_3086,Nucleic acid sequence composition (report), -http://edamontology.org/data_3101,Protein domain classification node, -http://edamontology.org/data_3102,CAS number, -http://edamontology.org/data_3103,ATC code, -http://edamontology.org/data_3104,UNII, -http://edamontology.org/data_3105,Geotemporal metadata, -http://edamontology.org/data_3106,System metadata, -http://edamontology.org/data_3107,Sequence feature name, -http://edamontology.org/data_3108,Experimental measurement, -http://edamontology.org/data_3110,Raw microarray data, -http://edamontology.org/data_3111,Processed microarray data, -http://edamontology.org/data_3112,Gene expression matrix, -http://edamontology.org/data_3113,Sample annotation, -http://edamontology.org/data_3115,Microarray metadata, -http://edamontology.org/data_3116,Microarray protocol annotation, -http://edamontology.org/data_3117,Microarray hybridisation data, -http://edamontology.org/data_3119,Sequence features (compositionally-biased regions), -http://edamontology.org/data_3122,Nucleic acid features (difference and change), -http://edamontology.org/data_3128,Nucleic acid structure report, -http://edamontology.org/data_3129,Protein features report (repeats), -http://edamontology.org/data_3130,Sequence motif matches (protein), -http://edamontology.org/data_3131,Sequence motif matches (nucleic acid), -http://edamontology.org/data_3132,Nucleic acid features (d-loop), -http://edamontology.org/data_3133,Nucleic acid features (stem loop), -http://edamontology.org/data_3134,Gene transcript report, -http://edamontology.org/data_3137,Non-coding RNA, -http://edamontology.org/data_3138,Transcriptional features (report), -http://edamontology.org/data_3140,Nucleic acid features (immunoglobulin gene structure), -http://edamontology.org/data_3141,SCOP class, -http://edamontology.org/data_3142,SCOP fold, -http://edamontology.org/data_3143,SCOP superfamily, -http://edamontology.org/data_3144,SCOP family, -http://edamontology.org/data_3145,SCOP protein, -http://edamontology.org/data_3146,SCOP species, -http://edamontology.org/data_3147,Mass spectrometry experiment, -http://edamontology.org/data_3148,Gene family report, -http://edamontology.org/data_3153,Protein image, -http://edamontology.org/data_3154,Protein alignment, -http://edamontology.org/data_3165,NGS experiment, -http://edamontology.org/data_3181,Sequence assembly report, -http://edamontology.org/data_3210,Genome index, -http://edamontology.org/data_3231,GWAS report, -http://edamontology.org/data_3236,Cytoband position, -http://edamontology.org/data_3238,Cell type ontology ID, -http://edamontology.org/data_3241,Kinetic model, -http://edamontology.org/data_3264,COSMIC ID, -http://edamontology.org/data_3265,HGMD ID, -http://edamontology.org/data_3266,Sequence assembly ID, -http://edamontology.org/data_3268,Sequence feature type, -http://edamontology.org/data_3269,Gene homology (report), -http://edamontology.org/data_3270,Ensembl gene tree ID, -http://edamontology.org/data_3271,Gene tree, -http://edamontology.org/data_3272,Species tree, -http://edamontology.org/data_3273,Sample ID, -http://edamontology.org/data_3274,MGI accession, -http://edamontology.org/data_3275,Phenotype name, -http://edamontology.org/data_3354,Transition matrix, -http://edamontology.org/data_3355,Emission matrix, -http://edamontology.org/data_3356,Hidden Markov model, -http://edamontology.org/data_3358,Format identifier, -http://edamontology.org/data_3424,Raw image, -http://edamontology.org/data_3425,Carbohydrate property, -http://edamontology.org/data_3426,Proteomics experiment report, -http://edamontology.org/data_3427,RNAi report, -http://edamontology.org/data_3428,Simulation experiment report, -http://edamontology.org/data_3442,MRI image, -http://edamontology.org/data_3449,Cell migration track image, -http://edamontology.org/data_3451,Rate of association, -http://edamontology.org/data_3479,Gene order, -http://edamontology.org/data_3483,Spectrum, -http://edamontology.org/data_3488,NMR spectrum, -http://edamontology.org/data_3490,Chemical structure sketch, -http://edamontology.org/data_3492,Nucleic acid signature, -http://edamontology.org/data_3494,DNA sequence, -http://edamontology.org/data_3495,RNA sequence, -http://edamontology.org/data_3496,RNA sequence (raw), -http://edamontology.org/data_3497,DNA sequence (raw), -http://edamontology.org/data_3498,Sequence variations, -http://edamontology.org/data_3505,Bibliography, -http://edamontology.org/data_3509,Ontology mapping, -http://edamontology.org/data_3546,Image metadata, -http://edamontology.org/data_3558,Clinical trial report, -http://edamontology.org/data_3567,Reference sample report, -http://edamontology.org/data_3568,Gene Expression Atlas Experiment ID, -http://edamontology.org/data_3667,Disease identifier, -http://edamontology.org/data_3668,Disease name, -http://edamontology.org/data_3669,Training material, -http://edamontology.org/data_3670,Online course, -http://edamontology.org/data_3671,Text, -http://edamontology.org/data_3707,Biodiversity data, -http://edamontology.org/data_3716,Biosafety report, -http://edamontology.org/data_3717,Isolation report, -http://edamontology.org/data_3718,Pathogenicity report, -http://edamontology.org/data_3719,Biosafety classification, -http://edamontology.org/data_3720,Geographic location, -http://edamontology.org/data_3721,Isolation source, -http://edamontology.org/data_3722,Physiology parameter, -http://edamontology.org/data_3723,Morphology parameter, -http://edamontology.org/data_3724,Cultivation parameter, -http://edamontology.org/data_3732,Sequencing metadata name, -http://edamontology.org/data_3733,Flow cell identifier, -http://edamontology.org/data_3734,Lane identifier, -http://edamontology.org/data_3735,Run number, -http://edamontology.org/data_3736,Ecological data, -http://edamontology.org/data_3737,Alpha diversity data, -http://edamontology.org/data_3738,Beta diversity data, -http://edamontology.org/data_3739,Gamma diversity data, -http://edamontology.org/data_3743,Ordination plot, -http://edamontology.org/data_3753,Over-representation data, -http://edamontology.org/data_3754,GO-term enrichment data, -http://edamontology.org/data_3756,Localisation score, -http://edamontology.org/data_3757,Unimod ID, -http://edamontology.org/data_3759,ProteomeXchange ID, -http://edamontology.org/data_3768,Clustered expression profiles, -http://edamontology.org/data_3769,BRENDA ontology concept ID, -http://edamontology.org/data_3779,Annotated text, -http://edamontology.org/data_3786,Query script, -http://edamontology.org/data_3805,3D EM Map, -http://edamontology.org/data_3806,3D EM Mask, -http://edamontology.org/data_3807,EM Movie, -http://edamontology.org/data_3808,EM Micrograph, -http://edamontology.org/data_3842,Molecular simulation data, -http://edamontology.org/data_3856,RNA central ID, -http://edamontology.org/data_3861,Electronic health record, -http://edamontology.org/data_3869,Simulation, -http://edamontology.org/data_3870,Trajectory data, -http://edamontology.org/data_3871,Forcefield parameters, -http://edamontology.org/data_3872,Topology data, -http://edamontology.org/data_3905,Histogram, -http://edamontology.org/data_3914,Quality control report, -http://edamontology.org/data_3917,Count matrix, -http://edamontology.org/data_3924,DNA structure alignment, -http://edamontology.org/data_3932,Q-value, -http://edamontology.org/data_3949,Profile HMM, -http://edamontology.org/data_3952,Pathway ID (WikiPathways), -http://edamontology.org/data_3953,Pathway overrepresentation data, -http://edamontology.org/format_1196,SMILES, -http://edamontology.org/format_1197,InChI, -http://edamontology.org/format_1198,mf, -http://edamontology.org/format_1199,InChIKey, -http://edamontology.org/format_1200,smarts, -http://edamontology.org/format_1206,unambiguous pure, -http://edamontology.org/format_1207,nucleotide, -http://edamontology.org/format_1208,protein, -http://edamontology.org/format_1209,consensus, -http://edamontology.org/format_1210,pure nucleotide, -http://edamontology.org/format_1211,unambiguous pure nucleotide, -http://edamontology.org/format_1212,dna, -http://edamontology.org/format_1213,rna, -http://edamontology.org/format_1214,unambiguous pure dna, -http://edamontology.org/format_1215,pure dna, -http://edamontology.org/format_1216,unambiguous pure rna sequence, -http://edamontology.org/format_1217,pure rna, -http://edamontology.org/format_1218,unambiguous pure protein, -http://edamontology.org/format_1219,pure protein, -http://edamontology.org/format_1228,UniGene entry format, -http://edamontology.org/format_1247,COG sequence cluster format, -http://edamontology.org/format_1248,EMBL feature location, -http://edamontology.org/format_1295,quicktandem, -http://edamontology.org/format_1296,Sanger inverted repeats, -http://edamontology.org/format_1297,EMBOSS repeat, -http://edamontology.org/format_1316,est2genome format, -http://edamontology.org/format_1318,restrict format, -http://edamontology.org/format_1319,restover format, -http://edamontology.org/format_1320,REBASE restriction sites, -http://edamontology.org/format_1332,FASTA search results format, -http://edamontology.org/format_1333,BLAST results, -http://edamontology.org/format_1334,mspcrunch, -http://edamontology.org/format_1335,Smith-Waterman format, -http://edamontology.org/format_1336,dhf, -http://edamontology.org/format_1337,lhf, -http://edamontology.org/format_1341,InterPro hits format, -http://edamontology.org/format_1342,InterPro protein view report format, -http://edamontology.org/format_1343,InterPro match table format, -http://edamontology.org/format_1349,HMMER Dirichlet prior, -http://edamontology.org/format_1350,MEME Dirichlet prior, -http://edamontology.org/format_1351,HMMER emission and transition, -http://edamontology.org/format_1356,prosite-pattern, -http://edamontology.org/format_1357,EMBOSS sequence pattern, -http://edamontology.org/format_1360,meme-motif, -http://edamontology.org/format_1366,prosite-profile, -http://edamontology.org/format_1367,JASPAR format, -http://edamontology.org/format_1369,MEME background Markov model, -http://edamontology.org/format_1370,HMMER format, -http://edamontology.org/format_1391,HMMER-aln, -http://edamontology.org/format_1392,DIALIGN format, -http://edamontology.org/format_1393,daf, -http://edamontology.org/format_1419,Sequence-MEME profile alignment, -http://edamontology.org/format_1421,HMMER profile alignment (sequences versus HMMs), -http://edamontology.org/format_1422,HMMER profile alignment (HMM versus sequences), -http://edamontology.org/format_1423,Phylip distance matrix, -http://edamontology.org/format_1424,ClustalW dendrogram, -http://edamontology.org/format_1425,Phylip tree raw, -http://edamontology.org/format_1430,Phylip continuous quantitative characters, -http://edamontology.org/format_1431,Phylogenetic property values format, -http://edamontology.org/format_1432,Phylip character frequencies format, -http://edamontology.org/format_1433,Phylip discrete states format, -http://edamontology.org/format_1434,Phylip cliques format, -http://edamontology.org/format_1435,Phylip tree format, -http://edamontology.org/format_1436,TreeBASE format, -http://edamontology.org/format_1437,TreeFam format, -http://edamontology.org/format_1445,Phylip tree distance format, -http://edamontology.org/format_1454,dssp, -http://edamontology.org/format_1455,hssp, -http://edamontology.org/format_1457,Dot-bracket format, -http://edamontology.org/format_1458,Vienna local RNA secondary structure format, -http://edamontology.org/format_1475,PDB database entry format, -http://edamontology.org/format_1476,PDB, -http://edamontology.org/format_1477,mmCIF, -http://edamontology.org/format_1478,PDBML, -http://edamontology.org/format_1500,Domainatrix 3D-1D scoring matrix format, -http://edamontology.org/format_1504,aaindex, -http://edamontology.org/format_1511,IntEnz enzyme report format, -http://edamontology.org/format_1512,BRENDA enzyme report format, -http://edamontology.org/format_1513,KEGG REACTION enzyme report format, -http://edamontology.org/format_1514,KEGG ENZYME enzyme report format, -http://edamontology.org/format_1515,REBASE proto enzyme report format, -http://edamontology.org/format_1516,REBASE withrefm enzyme report format, -http://edamontology.org/format_1551,Pcons report format, -http://edamontology.org/format_1552,ProQ report format, -http://edamontology.org/format_1563,SMART domain assignment report format, -http://edamontology.org/format_1568,BIND entry format, -http://edamontology.org/format_1569,IntAct entry format, -http://edamontology.org/format_1570,InterPro entry format, -http://edamontology.org/format_1571,InterPro entry abstract format, -http://edamontology.org/format_1572,Gene3D entry format, -http://edamontology.org/format_1573,PIRSF entry format, -http://edamontology.org/format_1574,PRINTS entry format, -http://edamontology.org/format_1575,Panther Families and HMMs entry format, -http://edamontology.org/format_1576,Pfam entry format, -http://edamontology.org/format_1577,SMART entry format, -http://edamontology.org/format_1578,Superfamily entry format, -http://edamontology.org/format_1579,TIGRFam entry format, -http://edamontology.org/format_1580,ProDom entry format, -http://edamontology.org/format_1581,FSSP entry format, -http://edamontology.org/format_1582,findkm, -http://edamontology.org/format_1603,Ensembl gene report format, -http://edamontology.org/format_1604,DictyBase gene report format, -http://edamontology.org/format_1605,CGD gene report format, -http://edamontology.org/format_1606,DragonDB gene report format, -http://edamontology.org/format_1607,EcoCyc gene report format, -http://edamontology.org/format_1608,FlyBase gene report format, -http://edamontology.org/format_1609,Gramene gene report format, -http://edamontology.org/format_1610,KEGG GENES gene report format, -http://edamontology.org/format_1611,MaizeGDB gene report format, -http://edamontology.org/format_1612,MGD gene report format, -http://edamontology.org/format_1613,RGD gene report format, -http://edamontology.org/format_1614,SGD gene report format, -http://edamontology.org/format_1615,GeneDB gene report format, -http://edamontology.org/format_1616,TAIR gene report format, -http://edamontology.org/format_1617,WormBase gene report format, -http://edamontology.org/format_1618,ZFIN gene report format, -http://edamontology.org/format_1619,TIGR gene report format, -http://edamontology.org/format_1620,dbSNP polymorphism report format, -http://edamontology.org/format_1623,OMIM entry format, -http://edamontology.org/format_1624,HGVbase entry format, -http://edamontology.org/format_1625,HIVDB entry format, -http://edamontology.org/format_1626,KEGG DISEASE entry format, -http://edamontology.org/format_1627,Primer3 primer, -http://edamontology.org/format_1628,ABI, -http://edamontology.org/format_1629,mira, -http://edamontology.org/format_1630,CAF, -http://edamontology.org/format_1631,EXP, -http://edamontology.org/format_1632,SCF, -http://edamontology.org/format_1633,PHD, -http://edamontology.org/format_1637,dat, -http://edamontology.org/format_1638,cel, -http://edamontology.org/format_1639,affymetrix, -http://edamontology.org/format_1640,ArrayExpress entry format, -http://edamontology.org/format_1641,affymetrix-exp, -http://edamontology.org/format_1644,CHP, -http://edamontology.org/format_1645,EMDB entry format, -http://edamontology.org/format_1647,KEGG PATHWAY entry format, -http://edamontology.org/format_1648,MetaCyc entry format, -http://edamontology.org/format_1649,HumanCyc entry format, -http://edamontology.org/format_1650,INOH entry format, -http://edamontology.org/format_1651,PATIKA entry format, -http://edamontology.org/format_1652,Reactome entry format, -http://edamontology.org/format_1653,aMAZE entry format, -http://edamontology.org/format_1654,CPDB entry format, -http://edamontology.org/format_1655,Panther Pathways entry format, -http://edamontology.org/format_1665,Taverna workflow format, -http://edamontology.org/format_1666,BioModel mathematical model format, -http://edamontology.org/format_1697,KEGG LIGAND entry format, -http://edamontology.org/format_1698,KEGG COMPOUND entry format, -http://edamontology.org/format_1699,KEGG PLANT entry format, -http://edamontology.org/format_1700,KEGG GLYCAN entry format, -http://edamontology.org/format_1701,PubChem entry format, -http://edamontology.org/format_1702,ChemSpider entry format, -http://edamontology.org/format_1703,ChEBI entry format, -http://edamontology.org/format_1704,MSDchem ligand dictionary entry format, -http://edamontology.org/format_1705,HET group dictionary entry format, -http://edamontology.org/format_1706,KEGG DRUG entry format, -http://edamontology.org/format_1734,PubMed citation, -http://edamontology.org/format_1735,Medline Display Format, -http://edamontology.org/format_1736,CiteXplore-core, -http://edamontology.org/format_1737,CiteXplore-all, -http://edamontology.org/format_1739,pmc, -http://edamontology.org/format_1740,iHOP format, -http://edamontology.org/format_1741,OSCAR format, -http://edamontology.org/format_1747,PDB atom record format, -http://edamontology.org/format_1760,CATH chain report format, -http://edamontology.org/format_1761,CATH PDB report format, -http://edamontology.org/format_1782,NCBI gene report format, -http://edamontology.org/format_1808,GeneIlluminator gene report format, -http://edamontology.org/format_1809,BacMap gene card format, -http://edamontology.org/format_1810,ColiCard report format, -http://edamontology.org/format_1861,PlasMapper TextMap, -http://edamontology.org/format_1910,newick, -http://edamontology.org/format_1911,TreeCon format, -http://edamontology.org/format_1912,Nexus format, -http://edamontology.org/format_1915,Format, -http://edamontology.org/format_1918,Atomic data format, -http://edamontology.org/format_1919,Sequence record format, -http://edamontology.org/format_1920,Sequence feature annotation format, -http://edamontology.org/format_1921,Alignment format, -http://edamontology.org/format_1923,acedb, -http://edamontology.org/format_1924,clustal sequence format, -http://edamontology.org/format_1925,codata, -http://edamontology.org/format_1926,dbid, -http://edamontology.org/format_1927,EMBL format, -http://edamontology.org/format_1928,Staden experiment format, -http://edamontology.org/format_1929,FASTA, -http://edamontology.org/format_1930,FASTQ,fq|fastq -http://edamontology.org/format_1931,FASTQ-illumina, -http://edamontology.org/format_1932,FASTQ-sanger, -http://edamontology.org/format_1933,FASTQ-solexa, -http://edamontology.org/format_1934,fitch program, -http://edamontology.org/format_1935,GCG, -http://edamontology.org/format_1936,GenBank format, -http://edamontology.org/format_1937,genpept, -http://edamontology.org/format_1938,GFF2-seq, -http://edamontology.org/format_1939,GFF3-seq, -http://edamontology.org/format_1940,giFASTA format, -http://edamontology.org/format_1941,hennig86, -http://edamontology.org/format_1942,ig, -http://edamontology.org/format_1943,igstrict, -http://edamontology.org/format_1944,jackknifer, -http://edamontology.org/format_1945,mase format, -http://edamontology.org/format_1946,mega-seq, -http://edamontology.org/format_1947,GCG MSF, -http://edamontology.org/format_1948,nbrf/pir, -http://edamontology.org/format_1949,nexus-seq, -http://edamontology.org/format_1950,pdbatom, -http://edamontology.org/format_1951,pdbatomnuc, -http://edamontology.org/format_1952,pdbseqresnuc, -http://edamontology.org/format_1953,pdbseqres, -http://edamontology.org/format_1954,Pearson format, -http://edamontology.org/format_1955,phylip sequence format, -http://edamontology.org/format_1956,phylipnon sequence format, -http://edamontology.org/format_1957,raw, -http://edamontology.org/format_1958,refseqp, -http://edamontology.org/format_1959,selex sequence format, -http://edamontology.org/format_1960,Staden format, -http://edamontology.org/format_1961,Stockholm format, -http://edamontology.org/format_1962,strider format, -http://edamontology.org/format_1963,UniProtKB format, -http://edamontology.org/format_1964,plain text format (unformatted), -http://edamontology.org/format_1965,treecon sequence format, -http://edamontology.org/format_1966,ASN.1 sequence format, -http://edamontology.org/format_1967,DAS format, -http://edamontology.org/format_1968,dasdna, -http://edamontology.org/format_1969,debug-seq, -http://edamontology.org/format_1970,jackknifernon, -http://edamontology.org/format_1971,meganon sequence format, -http://edamontology.org/format_1972,NCBI format, -http://edamontology.org/format_1973,nexusnon, -http://edamontology.org/format_1974,GFF2, -http://edamontology.org/format_1975,GFF3, -http://edamontology.org/format_1976,pir, -http://edamontology.org/format_1977,swiss feature, -http://edamontology.org/format_1978,DASGFF, -http://edamontology.org/format_1979,debug-feat, -http://edamontology.org/format_1980,EMBL feature, -http://edamontology.org/format_1981,GenBank feature, -http://edamontology.org/format_1982,ClustalW format, -http://edamontology.org/format_1983,debug, -http://edamontology.org/format_1984,FASTA-aln, -http://edamontology.org/format_1985,markx0, -http://edamontology.org/format_1986,markx1, -http://edamontology.org/format_1987,markx10, -http://edamontology.org/format_1988,markx2, -http://edamontology.org/format_1989,markx3, -http://edamontology.org/format_1990,match, -http://edamontology.org/format_1991,mega, -http://edamontology.org/format_1992,meganon, -http://edamontology.org/format_1993,msf alignment format, -http://edamontology.org/format_1994,nexus alignment format, -http://edamontology.org/format_1995,nexusnon alignment format, -http://edamontology.org/format_1996,pair, -http://edamontology.org/format_1997,PHYLIP format, -http://edamontology.org/format_1998,PHYLIP sequential, -http://edamontology.org/format_1999,scores format, -http://edamontology.org/format_2000,selex, -http://edamontology.org/format_2001,EMBOSS simple format, -http://edamontology.org/format_2002,srs format, -http://edamontology.org/format_2003,srspair, -http://edamontology.org/format_2004,T-Coffee format, -http://edamontology.org/format_2005,TreeCon-seq, -http://edamontology.org/format_2006,Phylogenetic tree format, -http://edamontology.org/format_2013,Biological pathway or network format, -http://edamontology.org/format_2014,Sequence-profile alignment format, -http://edamontology.org/format_2015,Sequence-profile alignment (HMM) format, -http://edamontology.org/format_2017,Amino acid index format, -http://edamontology.org/format_2020,Article format, -http://edamontology.org/format_2021,Text mining report format, -http://edamontology.org/format_2027,Enzyme kinetics report format, -http://edamontology.org/format_2030,Chemical data format, -http://edamontology.org/format_2031,Gene annotation format, -http://edamontology.org/format_2032,Workflow format, -http://edamontology.org/format_2033,Tertiary structure format, -http://edamontology.org/format_2034,Biological model format, -http://edamontology.org/format_2035,Chemical formula format, -http://edamontology.org/format_2036,Phylogenetic character data format, -http://edamontology.org/format_2037,Phylogenetic continuous quantitative character format, -http://edamontology.org/format_2038,Phylogenetic discrete states format, -http://edamontology.org/format_2039,Phylogenetic tree report (cliques) format, -http://edamontology.org/format_2040,Phylogenetic tree report (invariants) format, -http://edamontology.org/format_2045,Electron microscopy model format, -http://edamontology.org/format_2049,Phylogenetic tree report (tree distances) format, -http://edamontology.org/format_2051,Polymorphism report format, -http://edamontology.org/format_2052,Protein family report format, -http://edamontology.org/format_2054,Protein interaction format, -http://edamontology.org/format_2055,Sequence assembly format, -http://edamontology.org/format_2056,Microarray experiment data format, -http://edamontology.org/format_2057,Sequence trace format, -http://edamontology.org/format_2058,Gene expression report format, -http://edamontology.org/format_2059,Genotype and phenotype annotation format, -http://edamontology.org/format_2060,Map format, -http://edamontology.org/format_2061,Nucleic acid features (primers) format, -http://edamontology.org/format_2062,Protein report format, -http://edamontology.org/format_2063,Protein report (enzyme) format, -http://edamontology.org/format_2064,3D-1D scoring matrix format, -http://edamontology.org/format_2065,Protein structure report (quality evaluation) format, -http://edamontology.org/format_2066,Database hits (sequence) format, -http://edamontology.org/format_2067,Sequence distance matrix format, -http://edamontology.org/format_2068,Sequence motif format, -http://edamontology.org/format_2069,Sequence profile format, -http://edamontology.org/format_2072,Hidden Markov model format, -http://edamontology.org/format_2074,Dirichlet distribution format, -http://edamontology.org/format_2075,HMM emission and transition counts format, -http://edamontology.org/format_2076,RNA secondary structure format, -http://edamontology.org/format_2077,Protein secondary structure format, -http://edamontology.org/format_2078,Sequence range format, -http://edamontology.org/format_2094,pure, -http://edamontology.org/format_2095,unpure, -http://edamontology.org/format_2096,unambiguous sequence, -http://edamontology.org/format_2097,ambiguous, -http://edamontology.org/format_2155,Sequence features (repeats) format, -http://edamontology.org/format_2158,Nucleic acid features (restriction sites) format, -http://edamontology.org/format_2159,Gene features (coding region) format, -http://edamontology.org/format_2170,Sequence cluster format, -http://edamontology.org/format_2171,Sequence cluster format (protein), -http://edamontology.org/format_2172,Sequence cluster format (nucleic acid), -http://edamontology.org/format_2175,Gene cluster format, -http://edamontology.org/format_2181,EMBL-like (text), -http://edamontology.org/format_2182,FASTQ-like format (text), -http://edamontology.org/format_2183,EMBLXML, -http://edamontology.org/format_2184,cdsxml, -http://edamontology.org/format_2185,insdxml, -http://edamontology.org/format_2186,geneseq, -http://edamontology.org/format_2187,UniProt-like (text), -http://edamontology.org/format_2188,UniProt format, -http://edamontology.org/format_2189,ipi, -http://edamontology.org/format_2194,medline, -http://edamontology.org/format_2195,Ontology format, -http://edamontology.org/format_2196,OBO format, -http://edamontology.org/format_2197,OWL format, -http://edamontology.org/format_2200,FASTA-like (text), -http://edamontology.org/format_2202,Sequence record full format, -http://edamontology.org/format_2203,Sequence record lite format, -http://edamontology.org/format_2204,EMBL format (XML), -http://edamontology.org/format_2205,GenBank-like format (text), -http://edamontology.org/format_2206,Sequence feature table format (text), -http://edamontology.org/format_2210,Strain data format, -http://edamontology.org/format_2211,CIP strain data format, -http://edamontology.org/format_2243,phylip property values, -http://edamontology.org/format_2303,STRING entry format (HTML), -http://edamontology.org/format_2304,STRING entry format (XML), -http://edamontology.org/format_2305,GFF, -http://edamontology.org/format_2306,GTF, -http://edamontology.org/format_2310,FASTA-HTML, -http://edamontology.org/format_2311,EMBL-HTML, -http://edamontology.org/format_2322,BioCyc enzyme report format, -http://edamontology.org/format_2323,ENZYME enzyme report format, -http://edamontology.org/format_2328,PseudoCAP gene report format, -http://edamontology.org/format_2329,GeneCards gene report format, -http://edamontology.org/format_2330,Textual format, -http://edamontology.org/format_2331,HTML, -http://edamontology.org/format_2332,XML,xml -http://edamontology.org/format_2333,Binary format, -http://edamontology.org/format_2334,URI format, -http://edamontology.org/format_2341,NCI-Nature pathway entry format, -http://edamontology.org/format_2350,Format (by type of data), -http://edamontology.org/format_2352,BioXSD (XML), -http://edamontology.org/format_2376,RDF format, -http://edamontology.org/format_2532,GenBank-HTML, -http://edamontology.org/format_2542,Protein features (domains) format, -http://edamontology.org/format_2543,EMBL-like format, -http://edamontology.org/format_2545,FASTQ-like format, -http://edamontology.org/format_2546,FASTA-like, -http://edamontology.org/format_2547,uniprotkb-like format, -http://edamontology.org/format_2548,Sequence feature table format, -http://edamontology.org/format_2549,OBO, -http://edamontology.org/format_2550,OBO-XML, -http://edamontology.org/format_2551,Sequence record format (text), -http://edamontology.org/format_2552,Sequence record format (XML), -http://edamontology.org/format_2553,Sequence feature table format (XML), -http://edamontology.org/format_2554,Alignment format (text), -http://edamontology.org/format_2555,Alignment format (XML), -http://edamontology.org/format_2556,Phylogenetic tree format (text), -http://edamontology.org/format_2557,Phylogenetic tree format (XML), -http://edamontology.org/format_2558,EMBL-like (XML), -http://edamontology.org/format_2559,GenBank-like format, -http://edamontology.org/format_2560,STRING entry format, -http://edamontology.org/format_2561,Sequence assembly format (text), -http://edamontology.org/format_2562,Amino acid identifier format, -http://edamontology.org/format_2566,completely unambiguous, -http://edamontology.org/format_2567,completely unambiguous pure, -http://edamontology.org/format_2568,completely unambiguous pure nucleotide, -http://edamontology.org/format_2569,completely unambiguous pure dna, -http://edamontology.org/format_2570,completely unambiguous pure rna sequence, -http://edamontology.org/format_2571,Raw sequence format, -http://edamontology.org/format_2572,BAM, -http://edamontology.org/format_2573,SAM, -http://edamontology.org/format_2585,SBML, -http://edamontology.org/format_2607,completely unambiguous pure protein, -http://edamontology.org/format_2848,Bibliographic reference format, -http://edamontology.org/format_2919,Sequence annotation track format, -http://edamontology.org/format_2920,Alignment format (pair only), -http://edamontology.org/format_2921,Sequence variation annotation format, -http://edamontology.org/format_2922,markx0 variant, -http://edamontology.org/format_2923,mega variant, -http://edamontology.org/format_2924,Phylip format variant, -http://edamontology.org/format_3000,AB1, -http://edamontology.org/format_3001,ACE, -http://edamontology.org/format_3003,BED, -http://edamontology.org/format_3004,bigBed, -http://edamontology.org/format_3005,WIG, -http://edamontology.org/format_3006,bigWig, -http://edamontology.org/format_3007,PSL, -http://edamontology.org/format_3008,MAF, -http://edamontology.org/format_3009,2bit, -http://edamontology.org/format_3010,.nib, -http://edamontology.org/format_3011,genePred, -http://edamontology.org/format_3012,pgSnp, -http://edamontology.org/format_3013,axt, -http://edamontology.org/format_3014,LAV, -http://edamontology.org/format_3015,Pileup, -http://edamontology.org/format_3016,VCF, -http://edamontology.org/format_3017,SRF, -http://edamontology.org/format_3018,ZTR, -http://edamontology.org/format_3019,GVF, -http://edamontology.org/format_3020,BCF, -http://edamontology.org/format_3033,Matrix format, -http://edamontology.org/format_3097,Protein domain classification format, -http://edamontology.org/format_3098,Raw SCOP domain classification format, -http://edamontology.org/format_3099,Raw CATH domain classification format, -http://edamontology.org/format_3100,CATH domain report format, -http://edamontology.org/format_3155,SBRML, -http://edamontology.org/format_3156,BioPAX, -http://edamontology.org/format_3157,EBI Application Result XML, -http://edamontology.org/format_3158,PSI MI XML (MIF), -http://edamontology.org/format_3159,phyloXML, -http://edamontology.org/format_3160,NeXML, -http://edamontology.org/format_3161,MAGE-ML, -http://edamontology.org/format_3162,MAGE-TAB, -http://edamontology.org/format_3163,GCDML, -http://edamontology.org/format_3164,GTrack, -http://edamontology.org/format_3166,Biological pathway or network report format, -http://edamontology.org/format_3167,Experiment annotation format, -http://edamontology.org/format_3235,Cytoband format, -http://edamontology.org/format_3239,CopasiML, -http://edamontology.org/format_3240,CellML, -http://edamontology.org/format_3242,PSI MI TAB (MITAB), -http://edamontology.org/format_3243,PSI-PAR, -http://edamontology.org/format_3244,mzML, -http://edamontology.org/format_3245,Mass spectrometry data format, -http://edamontology.org/format_3246,TraML, -http://edamontology.org/format_3247,mzIdentML, -http://edamontology.org/format_3248,mzQuantML, -http://edamontology.org/format_3249,GelML, -http://edamontology.org/format_3250,spML, -http://edamontology.org/format_3252,OWL Functional Syntax, -http://edamontology.org/format_3253,Manchester OWL Syntax, -http://edamontology.org/format_3254,KRSS2 Syntax, -http://edamontology.org/format_3255,Turtle, -http://edamontology.org/format_3256,N-Triples,nt -http://edamontology.org/format_3257,Notation3,n3 -http://edamontology.org/format_3261,RDF/XML,rdf -http://edamontology.org/format_3262,OWL/XML, -http://edamontology.org/format_3281,A2M, -http://edamontology.org/format_3284,SFF, -http://edamontology.org/format_3285,MAP, -http://edamontology.org/format_3286,PED, -http://edamontology.org/format_3287,Individual genetic data format, -http://edamontology.org/format_3288,PED/MAP, -http://edamontology.org/format_3309,CT, -http://edamontology.org/format_3310,SS, -http://edamontology.org/format_3311,RNAML, -http://edamontology.org/format_3312,GDE, -http://edamontology.org/format_3313,BLC, -http://edamontology.org/format_3326,Data index format, -http://edamontology.org/format_3327,BAI, -http://edamontology.org/format_3328,HMMER2, -http://edamontology.org/format_3329,HMMER3, -http://edamontology.org/format_3330,PO, -http://edamontology.org/format_3331,BLAST XML results format, -http://edamontology.org/format_3462,CRAM, -http://edamontology.org/format_3464,JSON,json -http://edamontology.org/format_3466,EPS, -http://edamontology.org/format_3467,GIF, -http://edamontology.org/format_3468,xls, -http://edamontology.org/format_3475,TSV,tsv|tab -http://edamontology.org/format_3476,Gene expression data format, -http://edamontology.org/format_3477,Cytoscape input file format, -http://edamontology.org/format_3484,ebwt, -http://edamontology.org/format_3485,RSF, -http://edamontology.org/format_3486,GCG format variant, -http://edamontology.org/format_3487,BSML, -http://edamontology.org/format_3491,ebwtl, -http://edamontology.org/format_3499,Ensembl variation file format, -http://edamontology.org/format_3506,docx, -http://edamontology.org/format_3507,Document format, -http://edamontology.org/format_3508,PDF, -http://edamontology.org/format_3547,Image format, -http://edamontology.org/format_3548,DICOM format, -http://edamontology.org/format_3549,nii, -http://edamontology.org/format_3550,mhd, -http://edamontology.org/format_3551,nrrd, -http://edamontology.org/format_3554,R file format, -http://edamontology.org/format_3555,SPSS, -http://edamontology.org/format_3556,MHTML,mhtml|mht|eml -http://edamontology.org/format_3578,IDAT, -http://edamontology.org/format_3579,JPG, -http://edamontology.org/format_3580,rcc, -http://edamontology.org/format_3581,arff, -http://edamontology.org/format_3582,afg, -http://edamontology.org/format_3583,bedgraph, -http://edamontology.org/format_3584,bedstrict, -http://edamontology.org/format_3585,bed6, -http://edamontology.org/format_3586,bed12, -http://edamontology.org/format_3587,chrominfo, -http://edamontology.org/format_3588,customtrack, -http://edamontology.org/format_3589,csfasta, -http://edamontology.org/format_3590,HDF5, -http://edamontology.org/format_3591,TIFF, -http://edamontology.org/format_3592,BMP, -http://edamontology.org/format_3593,im, -http://edamontology.org/format_3594,pcd, -http://edamontology.org/format_3595,pcx, -http://edamontology.org/format_3596,ppm, -http://edamontology.org/format_3597,psd, -http://edamontology.org/format_3598,xbm, -http://edamontology.org/format_3599,xpm, -http://edamontology.org/format_3600,rgb, -http://edamontology.org/format_3601,pbm, -http://edamontology.org/format_3602,pgm, -http://edamontology.org/format_3603,PNG, -http://edamontology.org/format_3604,SVG, -http://edamontology.org/format_3605,rast, -http://edamontology.org/format_3606,Sequence quality report format (text), -http://edamontology.org/format_3607,qual, -http://edamontology.org/format_3608,qualsolexa, -http://edamontology.org/format_3609,qualillumina, -http://edamontology.org/format_3610,qualsolid, -http://edamontology.org/format_3611,qual454, -http://edamontology.org/format_3612,ENCODE peak format, -http://edamontology.org/format_3613,ENCODE narrow peak format, -http://edamontology.org/format_3614,ENCODE broad peak format, -http://edamontology.org/format_3615,bgzip, -http://edamontology.org/format_3616,tabix, -http://edamontology.org/format_3617,Graph format, -http://edamontology.org/format_3618,xgmml, -http://edamontology.org/format_3619,sif, -http://edamontology.org/format_3620,xlsx, -http://edamontology.org/format_3621,SQLite format, -http://edamontology.org/format_3622,Gemini SQLite format, -http://edamontology.org/format_3623,Index format, -http://edamontology.org/format_3624,snpeffdb, -http://edamontology.org/format_3626,MAT, -http://edamontology.org/format_3650,netCDF, -http://edamontology.org/format_3651,MGF, -http://edamontology.org/format_3652,dta, -http://edamontology.org/format_3653,pkl, -http://edamontology.org/format_3654,mzXML, -http://edamontology.org/format_3655,pepXML, -http://edamontology.org/format_3657,GPML, -http://edamontology.org/format_3665,K-mer countgraph,oxlicg -http://edamontology.org/format_3681,mzTab, -http://edamontology.org/format_3682,imzML metadata file,imzML -http://edamontology.org/format_3683,qcML, -http://edamontology.org/format_3684,PRIDE XML, -http://edamontology.org/format_3685,SED-ML, -http://edamontology.org/format_3686,COMBINE OMEX, -http://edamontology.org/format_3687,ISA-TAB, -http://edamontology.org/format_3688,SBtab, -http://edamontology.org/format_3689,BCML, -http://edamontology.org/format_3690,BDML, -http://edamontology.org/format_3691,BEL, -http://edamontology.org/format_3692,SBGN-ML, -http://edamontology.org/format_3693,AGP, -http://edamontology.org/format_3696,PS, -http://edamontology.org/format_3698,SRA format, -http://edamontology.org/format_3699,VDB, -http://edamontology.org/format_3700,Tabix index file format, -http://edamontology.org/format_3701,Sequin format, -http://edamontology.org/format_3702,MSF, -http://edamontology.org/format_3706,Biodiversity data format, -http://edamontology.org/format_3708,ABCD format, -http://edamontology.org/format_3709,GCT/Res format, -http://edamontology.org/format_3710,WIFF format,wiff -http://edamontology.org/format_3711,X!Tandem XML, -http://edamontology.org/format_3712,Thermo RAW, -http://edamontology.org/format_3713,Mascot .dat file, -http://edamontology.org/format_3714,MaxQuant APL peaklist format, -http://edamontology.org/format_3725,SBOL, -http://edamontology.org/format_3726,PMML, -http://edamontology.org/format_3727,OME-TIFF, -http://edamontology.org/format_3728,LocARNA PP, -http://edamontology.org/format_3729,dbGaP format, -http://edamontology.org/format_3746,BIOM format,biom -http://edamontology.org/format_3747,protXML, -http://edamontology.org/format_3748,Linked data format, -http://edamontology.org/format_3749,JSON-LD,jsonld -http://edamontology.org/format_3750,YAML,yaml|yml -http://edamontology.org/format_3751,DSV, -http://edamontology.org/format_3752,CSV,csv -http://edamontology.org/format_3758,SEQUEST .out file, -http://edamontology.org/format_3764,idXML, -http://edamontology.org/format_3765,KNIME datatable format, -http://edamontology.org/format_3770,UniProtKB XML, -http://edamontology.org/format_3771,UniProtKB RDF, -http://edamontology.org/format_3772,BioJSON (BioXSD), -http://edamontology.org/format_3773,BioYAML, -http://edamontology.org/format_3774,BioJSON (Jalview), -http://edamontology.org/format_3775,GSuite, -http://edamontology.org/format_3776,BTrack, -http://edamontology.org/format_3777,MCPD, -http://edamontology.org/format_3780,Annotated text format, -http://edamontology.org/format_3781,PubAnnotation format, -http://edamontology.org/format_3782,BioC, -http://edamontology.org/format_3783,PubTator format, -http://edamontology.org/format_3784,Open Annotation format, -http://edamontology.org/format_3785,BioNLP Shared Task format, -http://edamontology.org/format_3787,Query language, -http://edamontology.org/format_3788,SQL,sql -http://edamontology.org/format_3789,XQuery,xq|xqy|xquery -http://edamontology.org/format_3790,SPARQL, -http://edamontology.org/format_3804,xsd, -http://edamontology.org/format_3811,XMFA, -http://edamontology.org/format_3812,GEN, -http://edamontology.org/format_3813,SAMPLE file format, -http://edamontology.org/format_3814,SDF, -http://edamontology.org/format_3815,Molfile, -http://edamontology.org/format_3816,Mol2, -http://edamontology.org/format_3817,latex, -http://edamontology.org/format_3818,ELAND format, -http://edamontology.org/format_3819,Relaxed PHYLIP Interleaved, -http://edamontology.org/format_3820,Relaxed PHYLIP Sequential, -http://edamontology.org/format_3821,VisML, -http://edamontology.org/format_3822,GML, -http://edamontology.org/format_3823,FASTG, -http://edamontology.org/format_3824,NMR data format, -http://edamontology.org/format_3825,nmrML, -http://edamontology.org/format_3826,proBAM, -http://edamontology.org/format_3827,proBED, -http://edamontology.org/format_3828,Raw microarray data format, -http://edamontology.org/format_3829,GPR, -http://edamontology.org/format_3830,ARB, -http://edamontology.org/format_3832,consensusXML, -http://edamontology.org/format_3833,featureXML, -http://edamontology.org/format_3834,mzData, -http://edamontology.org/format_3835,TIDE TXT, -http://edamontology.org/format_3836,BLAST XML v2 results format, -http://edamontology.org/format_3838,pptx, -http://edamontology.org/format_3839,ibd,ibd -http://edamontology.org/format_3841,NLP format, -http://edamontology.org/format_3843,BEAST, -http://edamontology.org/format_3844,Chado-XML, -http://edamontology.org/format_3845,HSAML, -http://edamontology.org/format_3846,InterProScan XML, -http://edamontology.org/format_3847,KGML, -http://edamontology.org/format_3848,PubMed XML, -http://edamontology.org/format_3849,MSAML, -http://edamontology.org/format_3850,OrthoXML, -http://edamontology.org/format_3851,PSDML, -http://edamontology.org/format_3852,SeqXML, -http://edamontology.org/format_3853,UniParc XML, -http://edamontology.org/format_3854,UniRef XML, -http://edamontology.org/format_3857,CWL,cwl -http://edamontology.org/format_3858,Waters RAW, -http://edamontology.org/format_3859,JCAMP-DX, -http://edamontology.org/format_3862,NLP annotation format, -http://edamontology.org/format_3863,NLP corpus format, -http://edamontology.org/format_3864,mirGFF3, -http://edamontology.org/format_3865,RNA annotation format, -http://edamontology.org/format_3866,Trajectory format, -http://edamontology.org/format_3867,Trajectory format (binary), -http://edamontology.org/format_3868,Trajectory format (text), -http://edamontology.org/format_3873,HDF, -http://edamontology.org/format_3874,PCAzip, -http://edamontology.org/format_3875,XTC, -http://edamontology.org/format_3876,TNG, -http://edamontology.org/format_3877,XYZ, -http://edamontology.org/format_3878,mdcrd, -http://edamontology.org/format_3879,Topology format, -http://edamontology.org/format_3880,GROMACS top, -http://edamontology.org/format_3881,AMBER top, -http://edamontology.org/format_3882,PSF, -http://edamontology.org/format_3883,GROMACS itp, -http://edamontology.org/format_3884,FF parameter format, -http://edamontology.org/format_3885,BinPos, -http://edamontology.org/format_3886,RST, -http://edamontology.org/format_3887,CHARMM rtf, -http://edamontology.org/format_3888,AMBER frcmod, -http://edamontology.org/format_3889,AMBER off, -http://edamontology.org/format_3906,NMReDATA, -http://edamontology.org/format_3909,BpForms, -http://edamontology.org/format_3910,trr, -http://edamontology.org/format_3911,msh,msh -http://edamontology.org/format_3913,Loom,loom -http://edamontology.org/format_3915,Zarr,zarray|zgroup -http://edamontology.org/format_3916,MTX,mtx -http://edamontology.org/format_3951,BcForms, -http://edamontology.org/format_3956,N-Quads,nq -http://edamontology.org/format_3969,Vega,json -http://edamontology.org/format_3970,Vega-lite,json -http://edamontology.org/format_3971,NeuroML, -http://edamontology.org/format_3972,BNGL,bngl -http://edamontology.org/format_3973,Docker image format,dockerfile -http://edamontology.org/format_3975,GFA 1,gfa -http://edamontology.org/format_3976,GFA 2,gfa -http://edamontology.org/format_3977,ObjTables,xlsx -http://edamontology.org/format_3978,CONTIG,contig -http://edamontology.org/format_3979,WEGO,wego -http://edamontology.org/format_3980,RPKM,rpkm -http://edamontology.org/format_3981,TAR format,tar -http://edamontology.org/format_3982,CHAIN,chain -http://edamontology.org/format_3983,NET,net -http://edamontology.org/format_3984,QMAP,qmap -http://edamontology.org/format_3985,gxformat2,ga -http://edamontology.org/format_3986,WMV,wmv -http://edamontology.org/format_3987,ZIP format,zip -http://edamontology.org/format_3988,LSM,lsm -http://edamontology.org/format_3989,GZIP format,gz|gzip -http://edamontology.org/format_3990,AVI,avi -http://edamontology.org/format_3991,TrackDB,trackDb -http://edamontology.org/format_3992,CIGAR format,cigar -http://edamontology.org/format_3993,Stereolithography format,stl -http://edamontology.org/format_3994,U3D,u3d -http://edamontology.org/format_3995,Texture file format,tex -http://edamontology.org/format_3996,Python script,py -http://edamontology.org/format_3997,MPEG-4,mp4 -http://edamontology.org/format_3998,Perl script,pl -http://edamontology.org/format_3999,R script,R -http://edamontology.org/format_4000,R markdown,Rmd -http://edamontology.org/format_4001,NIFTI format,nii -http://edamontology.org/format_4002,pickle,pickle -http://edamontology.org/format_4003,NumPy format,npy -http://edamontology.org/format_4004,SimTools repertoire file format,repz -http://edamontology.org/format_4005,Configuration file format,cfg -http://edamontology.org/format_4006,Zstandard format,zst -http://edamontology.org/format_4007,MATLAB script,m -http://edamontology.org/operation_0004,Operation, -http://edamontology.org/operation_0224,Query and retrieval, -http://edamontology.org/operation_0225,Data retrieval (database cross-reference), -http://edamontology.org/operation_0226,Annotation, -http://edamontology.org/operation_0227,Indexing, -http://edamontology.org/operation_0228,Data index analysis, -http://edamontology.org/operation_0229,Annotation retrieval (sequence), -http://edamontology.org/operation_0230,Sequence generation, -http://edamontology.org/operation_0231,Sequence editing, -http://edamontology.org/operation_0232,Sequence merging, -http://edamontology.org/operation_0233,Sequence conversion, -http://edamontology.org/operation_0234,Sequence complexity calculation, -http://edamontology.org/operation_0235,Sequence ambiguity calculation, -http://edamontology.org/operation_0236,Sequence composition calculation, -http://edamontology.org/operation_0237,Repeat sequence analysis, -http://edamontology.org/operation_0238,Sequence motif discovery, -http://edamontology.org/operation_0239,Sequence motif recognition, -http://edamontology.org/operation_0240,Sequence motif comparison, -http://edamontology.org/operation_0241,Transcription regulatory sequence analysis, -http://edamontology.org/operation_0242,Conserved transcription regulatory sequence identification, -http://edamontology.org/operation_0243,Protein property calculation (from structure), -http://edamontology.org/operation_0244,Simulation analysis, -http://edamontology.org/operation_0245,Structural motif discovery, -http://edamontology.org/operation_0246,Protein domain recognition, -http://edamontology.org/operation_0247,Protein architecture analysis, -http://edamontology.org/operation_0248,Residue interaction calculation, -http://edamontology.org/operation_0249,Protein geometry calculation, -http://edamontology.org/operation_0250,Protein property calculation, -http://edamontology.org/operation_0252,Peptide immunogenicity prediction, -http://edamontology.org/operation_0253,Sequence feature detection, -http://edamontology.org/operation_0254,Data retrieval (feature table), -http://edamontology.org/operation_0255,Feature table query, -http://edamontology.org/operation_0256,Sequence feature comparison, -http://edamontology.org/operation_0257,Data retrieval (sequence alignment), -http://edamontology.org/operation_0258,Sequence alignment analysis, -http://edamontology.org/operation_0259,Sequence alignment comparison, -http://edamontology.org/operation_0260,Sequence alignment conversion, -http://edamontology.org/operation_0261,Nucleic acid property processing, -http://edamontology.org/operation_0262,Nucleic acid property calculation, -http://edamontology.org/operation_0264,Alternative splicing prediction, -http://edamontology.org/operation_0265,Frameshift detection, -http://edamontology.org/operation_0266,Vector sequence detection, -http://edamontology.org/operation_0267,Protein secondary structure prediction, -http://edamontology.org/operation_0268,Protein super-secondary structure prediction, -http://edamontology.org/operation_0269,Transmembrane protein prediction, -http://edamontology.org/operation_0270,Transmembrane protein analysis, -http://edamontology.org/operation_0271,Structure prediction, -http://edamontology.org/operation_0272,Residue contact prediction, -http://edamontology.org/operation_0273,Protein interaction raw data analysis, -http://edamontology.org/operation_0274,Protein-protein interaction prediction (from protein sequence), -http://edamontology.org/operation_0275,Protein-protein interaction prediction (from protein structure), -http://edamontology.org/operation_0276,Protein interaction network analysis, -http://edamontology.org/operation_0277,Pathway or network comparison, -http://edamontology.org/operation_0278,RNA secondary structure prediction, -http://edamontology.org/operation_0279,Nucleic acid folding analysis, -http://edamontology.org/operation_0280,Data retrieval (restriction enzyme annotation), -http://edamontology.org/operation_0281,Genetic marker identification, -http://edamontology.org/operation_0282,Genetic mapping, -http://edamontology.org/operation_0283,Linkage analysis, -http://edamontology.org/operation_0284,Codon usage table generation, -http://edamontology.org/operation_0285,Codon usage table comparison, -http://edamontology.org/operation_0286,Codon usage analysis, -http://edamontology.org/operation_0287,Base position variability plotting, -http://edamontology.org/operation_0288,Sequence word comparison, -http://edamontology.org/operation_0289,Sequence distance matrix generation, -http://edamontology.org/operation_0290,Sequence redundancy removal, -http://edamontology.org/operation_0291,Sequence clustering, -http://edamontology.org/operation_0292,Sequence alignment, -http://edamontology.org/operation_0293,Hybrid sequence alignment construction, -http://edamontology.org/operation_0294,Structure-based sequence alignment, -http://edamontology.org/operation_0295,Structure alignment, -http://edamontology.org/operation_0296,Sequence profile generation, -http://edamontology.org/operation_0297,3D profile generation, -http://edamontology.org/operation_0298,Profile-profile alignment, -http://edamontology.org/operation_0299,3D profile-to-3D profile alignment, -http://edamontology.org/operation_0300,Sequence profile alignment, -http://edamontology.org/operation_0301,Sequence-to-3D-profile alignment, -http://edamontology.org/operation_0302,Protein threading, -http://edamontology.org/operation_0303,Fold recognition, -http://edamontology.org/operation_0304,Metadata retrieval, -http://edamontology.org/operation_0305,Literature search, -http://edamontology.org/operation_0306,Text mining, -http://edamontology.org/operation_0307,Virtual PCR, -http://edamontology.org/operation_0308,PCR primer design, -http://edamontology.org/operation_0309,Microarray probe design, -http://edamontology.org/operation_0310,Sequence assembly, -http://edamontology.org/operation_0311,Microarray data standardisation and normalisation, -http://edamontology.org/operation_0312,Sequencing-based expression profile data processing, -http://edamontology.org/operation_0313,Expression profile clustering, -http://edamontology.org/operation_0314,Gene expression profiling, -http://edamontology.org/operation_0315,Expression profile comparison, -http://edamontology.org/operation_0316,Functional profiling, -http://edamontology.org/operation_0317,EST and cDNA sequence analysis, -http://edamontology.org/operation_0318,Structural genomics target selection, -http://edamontology.org/operation_0319,Protein secondary structure assignment, -http://edamontology.org/operation_0320,Protein structure assignment, -http://edamontology.org/operation_0321,Protein structure validation, -http://edamontology.org/operation_0322,Molecular model refinement, -http://edamontology.org/operation_0323,Phylogenetic inference, -http://edamontology.org/operation_0324,Phylogenetic analysis, -http://edamontology.org/operation_0325,Phylogenetic tree comparison, -http://edamontology.org/operation_0326,Phylogenetic tree editing, -http://edamontology.org/operation_0327,Phylogenetic footprinting, -http://edamontology.org/operation_0328,Protein folding simulation, -http://edamontology.org/operation_0329,Protein folding pathway prediction, -http://edamontology.org/operation_0330,Protein SNP mapping, -http://edamontology.org/operation_0331,Variant effect prediction, -http://edamontology.org/operation_0332,Immunogen design, -http://edamontology.org/operation_0333,Zinc finger prediction, -http://edamontology.org/operation_0334,Enzyme kinetics calculation, -http://edamontology.org/operation_0335,Formatting, -http://edamontology.org/operation_0336,Format validation, -http://edamontology.org/operation_0337,Visualisation, -http://edamontology.org/operation_0338,Sequence database search, -http://edamontology.org/operation_0339,Structure database search, -http://edamontology.org/operation_0340,Protein secondary database search, -http://edamontology.org/operation_0341,Motif database search, -http://edamontology.org/operation_0342,Sequence profile database search, -http://edamontology.org/operation_0343,Transmembrane protein database search, -http://edamontology.org/operation_0344,Sequence retrieval (by code), -http://edamontology.org/operation_0345,Sequence retrieval (by keyword), -http://edamontology.org/operation_0346,Sequence similarity search, -http://edamontology.org/operation_0347,Sequence database search (by motif or pattern), -http://edamontology.org/operation_0348,Sequence database search (by amino acid composition), -http://edamontology.org/operation_0349,Sequence database search (by property), -http://edamontology.org/operation_0350,Sequence database search (by sequence using word-based methods), -http://edamontology.org/operation_0351,Sequence database search (by sequence using profile-based methods), -http://edamontology.org/operation_0352,Sequence database search (by sequence using local alignment-based methods), -http://edamontology.org/operation_0353,Sequence database search (by sequence using global alignment-based methods), -http://edamontology.org/operation_0354,Sequence database search (by sequence for primer sequences), -http://edamontology.org/operation_0355,Sequence database search (by molecular weight), -http://edamontology.org/operation_0356,Sequence database search (by isoelectric point), -http://edamontology.org/operation_0357,Structure retrieval (by code), -http://edamontology.org/operation_0358,Structure retrieval (by keyword), -http://edamontology.org/operation_0359,Structure database search (by sequence), -http://edamontology.org/operation_0360,Structural similarity search, -http://edamontology.org/operation_0361,Sequence annotation, -http://edamontology.org/operation_0362,Genome annotation, -http://edamontology.org/operation_0363,Reverse complement, -http://edamontology.org/operation_0364,Random sequence generation, -http://edamontology.org/operation_0365,Restriction digest, -http://edamontology.org/operation_0366,Protein sequence cleavage, -http://edamontology.org/operation_0367,Sequence mutation and randomisation, -http://edamontology.org/operation_0368,Sequence masking, -http://edamontology.org/operation_0369,Sequence cutting, -http://edamontology.org/operation_0370,Restriction site creation, -http://edamontology.org/operation_0371,DNA translation, -http://edamontology.org/operation_0372,DNA transcription, -http://edamontology.org/operation_0377,Sequence composition calculation (nucleic acid), -http://edamontology.org/operation_0378,Sequence composition calculation (protein), -http://edamontology.org/operation_0379,Repeat sequence detection, -http://edamontology.org/operation_0380,Repeat sequence organisation analysis, -http://edamontology.org/operation_0383,Protein hydropathy calculation (from structure), -http://edamontology.org/operation_0384,Accessible surface calculation, -http://edamontology.org/operation_0385,Protein hydropathy cluster calculation, -http://edamontology.org/operation_0386,Protein dipole moment calculation, -http://edamontology.org/operation_0387,Molecular surface calculation, -http://edamontology.org/operation_0388,Protein binding site prediction (from structure), -http://edamontology.org/operation_0389,Protein-nucleic acid interaction analysis, -http://edamontology.org/operation_0390,Protein peeling, -http://edamontology.org/operation_0391,Protein distance matrix calculation, -http://edamontology.org/operation_0392,Contact map calculation, -http://edamontology.org/operation_0393,Residue cluster calculation, -http://edamontology.org/operation_0394,Hydrogen bond calculation, -http://edamontology.org/operation_0395,Residue non-canonical interaction detection, -http://edamontology.org/operation_0396,Ramachandran plot calculation, -http://edamontology.org/operation_0397,Ramachandran plot validation, -http://edamontology.org/operation_0398,Protein molecular weight calculation, -http://edamontology.org/operation_0399,Protein extinction coefficient calculation, -http://edamontology.org/operation_0400,Protein pKa calculation, -http://edamontology.org/operation_0401,Protein hydropathy calculation (from sequence), -http://edamontology.org/operation_0402,Protein titration curve plotting, -http://edamontology.org/operation_0403,Protein isoelectric point calculation, -http://edamontology.org/operation_0404,Protein hydrogen exchange rate calculation, -http://edamontology.org/operation_0405,Protein hydrophobic region calculation, -http://edamontology.org/operation_0406,Protein aliphatic index calculation, -http://edamontology.org/operation_0407,Protein hydrophobic moment plotting, -http://edamontology.org/operation_0408,Protein globularity prediction, -http://edamontology.org/operation_0409,Protein solubility prediction, -http://edamontology.org/operation_0410,Protein crystallizability prediction, -http://edamontology.org/operation_0411,Protein signal peptide detection (eukaryotes), -http://edamontology.org/operation_0412,Protein signal peptide detection (bacteria), -http://edamontology.org/operation_0413,MHC peptide immunogenicity prediction, -http://edamontology.org/operation_0414,Protein feature prediction (from sequence), -http://edamontology.org/operation_0415,Nucleic acid feature detection, -http://edamontology.org/operation_0416,Epitope mapping, -http://edamontology.org/operation_0417,PTM site prediction, -http://edamontology.org/operation_0418,Protein signal peptide detection, -http://edamontology.org/operation_0419,Protein binding site prediction (from sequence), -http://edamontology.org/operation_0420,Nucleic acids-binding site prediction, -http://edamontology.org/operation_0421,Protein folding site prediction, -http://edamontology.org/operation_0422,Protein cleavage site prediction, -http://edamontology.org/operation_0423,Epitope mapping (MHC Class I), -http://edamontology.org/operation_0424,Epitope mapping (MHC Class II), -http://edamontology.org/operation_0425,Whole gene prediction, -http://edamontology.org/operation_0426,Gene component prediction, -http://edamontology.org/operation_0427,Transposon prediction, -http://edamontology.org/operation_0428,PolyA signal detection, -http://edamontology.org/operation_0429,Quadruplex formation site detection, -http://edamontology.org/operation_0430,CpG island and isochore detection, -http://edamontology.org/operation_0431,Restriction site recognition, -http://edamontology.org/operation_0432,Nucleosome position prediction, -http://edamontology.org/operation_0433,Splice site prediction, -http://edamontology.org/operation_0434,Integrated gene prediction, -http://edamontology.org/operation_0435,Operon prediction, -http://edamontology.org/operation_0436,Coding region prediction, -http://edamontology.org/operation_0437,SECIS element prediction, -http://edamontology.org/operation_0438,Transcriptional regulatory element prediction, -http://edamontology.org/operation_0439,Translation initiation site prediction, -http://edamontology.org/operation_0440,Promoter prediction, -http://edamontology.org/operation_0441,cis-regulatory element prediction, -http://edamontology.org/operation_0442,Transcriptional regulatory element prediction (RNA-cis), -http://edamontology.org/operation_0443,trans-regulatory element prediction, -http://edamontology.org/operation_0444,S/MAR prediction, -http://edamontology.org/operation_0445,Transcription factor binding site prediction, -http://edamontology.org/operation_0446,Exonic splicing enhancer prediction, -http://edamontology.org/operation_0447,Sequence alignment validation, -http://edamontology.org/operation_0448,Sequence alignment analysis (conservation), -http://edamontology.org/operation_0449,Sequence alignment analysis (site correlation), -http://edamontology.org/operation_0450,Chimera detection, -http://edamontology.org/operation_0451,Recombination detection, -http://edamontology.org/operation_0452,Indel detection, -http://edamontology.org/operation_0453,Nucleosome formation potential prediction, -http://edamontology.org/operation_0455,Nucleic acid thermodynamic property calculation, -http://edamontology.org/operation_0456,Nucleic acid melting profile plotting, -http://edamontology.org/operation_0457,Nucleic acid stitch profile plotting, -http://edamontology.org/operation_0458,Nucleic acid melting curve plotting, -http://edamontology.org/operation_0459,Nucleic acid probability profile plotting, -http://edamontology.org/operation_0460,Nucleic acid temperature profile plotting, -http://edamontology.org/operation_0461,Nucleic acid curvature calculation, -http://edamontology.org/operation_0463,miRNA target prediction, -http://edamontology.org/operation_0464,tRNA gene prediction, -http://edamontology.org/operation_0465,siRNA binding specificity prediction, -http://edamontology.org/operation_0467,Protein secondary structure prediction (integrated), -http://edamontology.org/operation_0468,Protein secondary structure prediction (helices), -http://edamontology.org/operation_0469,Protein secondary structure prediction (turns), -http://edamontology.org/operation_0470,Protein secondary structure prediction (coils), -http://edamontology.org/operation_0471,Disulfide bond prediction, -http://edamontology.org/operation_0472,GPCR prediction, -http://edamontology.org/operation_0473,GPCR analysis, -http://edamontology.org/operation_0474,Protein structure prediction, -http://edamontology.org/operation_0475,Nucleic acid structure prediction, -http://edamontology.org/operation_0476,Ab initio structure prediction, -http://edamontology.org/operation_0477,Protein modelling, -http://edamontology.org/operation_0478,Molecular docking, -http://edamontology.org/operation_0479,Backbone modelling, -http://edamontology.org/operation_0480,Side chain modelling, -http://edamontology.org/operation_0481,Loop modelling, -http://edamontology.org/operation_0482,Protein-ligand docking, -http://edamontology.org/operation_0483,RNA inverse folding, -http://edamontology.org/operation_0484,SNP detection, -http://edamontology.org/operation_0485,Radiation Hybrid Mapping, -http://edamontology.org/operation_0486,Functional mapping, -http://edamontology.org/operation_0487,Haplotype mapping, -http://edamontology.org/operation_0488,Linkage disequilibrium calculation, -http://edamontology.org/operation_0489,Genetic code prediction, -http://edamontology.org/operation_0490,Dot plot plotting, -http://edamontology.org/operation_0491,Pairwise sequence alignment, -http://edamontology.org/operation_0492,Multiple sequence alignment, -http://edamontology.org/operation_0493,Pairwise sequence alignment generation (local), -http://edamontology.org/operation_0494,Pairwise sequence alignment generation (global), -http://edamontology.org/operation_0495,Local alignment, -http://edamontology.org/operation_0496,Global alignment, -http://edamontology.org/operation_0497,Constrained sequence alignment, -http://edamontology.org/operation_0498,Consensus-based sequence alignment, -http://edamontology.org/operation_0499,Tree-based sequence alignment, -http://edamontology.org/operation_0500,Secondary structure alignment generation, -http://edamontology.org/operation_0501,Protein secondary structure alignment generation, -http://edamontology.org/operation_0502,RNA secondary structure alignment, -http://edamontology.org/operation_0503,Pairwise structure alignment, -http://edamontology.org/operation_0504,Multiple structure alignment, -http://edamontology.org/operation_0505,Structure alignment (protein), -http://edamontology.org/operation_0506,Structure alignment (RNA), -http://edamontology.org/operation_0507,Pairwise structure alignment generation (local), -http://edamontology.org/operation_0508,Pairwise structure alignment generation (global), -http://edamontology.org/operation_0509,Local structure alignment, -http://edamontology.org/operation_0510,Global structure alignment, -http://edamontology.org/operation_0511,Profile-profile alignment (pairwise), -http://edamontology.org/operation_0512,Sequence alignment generation (multiple profile), -http://edamontology.org/operation_0513,3D profile-to-3D profile alignment (pairwise), -http://edamontology.org/operation_0514,Structural profile alignment generation (multiple), -http://edamontology.org/operation_0515,Data retrieval (tool metadata), -http://edamontology.org/operation_0516,Data retrieval (database metadata), -http://edamontology.org/operation_0517,PCR primer design (for large scale sequencing), -http://edamontology.org/operation_0518,PCR primer design (for genotyping polymorphisms), -http://edamontology.org/operation_0519,PCR primer design (for gene transcription profiling), -http://edamontology.org/operation_0520,PCR primer design (for conserved primers), -http://edamontology.org/operation_0521,PCR primer design (based on gene structure), -http://edamontology.org/operation_0522,PCR primer design (for methylation PCRs), -http://edamontology.org/operation_0523,Mapping assembly, -http://edamontology.org/operation_0524,De-novo assembly, -http://edamontology.org/operation_0525,Genome assembly, -http://edamontology.org/operation_0526,EST assembly, -http://edamontology.org/operation_0527,Sequence tag mapping, -http://edamontology.org/operation_0528,SAGE data processing, -http://edamontology.org/operation_0529,MPSS data processing, -http://edamontology.org/operation_0530,SBS data processing, -http://edamontology.org/operation_0531,Heat map generation, -http://edamontology.org/operation_0532,Gene expression profile analysis, -http://edamontology.org/operation_0533,Expression profile pathway mapping, -http://edamontology.org/operation_0534,Protein secondary structure assignment (from coordinate data), -http://edamontology.org/operation_0535,Protein secondary structure assignment (from CD data), -http://edamontology.org/operation_0536,Protein structure assignment (from X-ray crystallographic data), -http://edamontology.org/operation_0537,Protein structure assignment (from NMR data), -http://edamontology.org/operation_0538,Phylogenetic inference (data centric), -http://edamontology.org/operation_0539,Phylogenetic inference (method centric), -http://edamontology.org/operation_0540,Phylogenetic inference (from molecular sequences), -http://edamontology.org/operation_0541,Phylogenetic inference (from continuous quantitative characters), -http://edamontology.org/operation_0542,Phylogenetic inference (from gene frequencies), -http://edamontology.org/operation_0543,Phylogenetic inference (from polymorphism data), -http://edamontology.org/operation_0544,Species tree construction, -http://edamontology.org/operation_0545,Phylogenetic inference (parsimony methods), -http://edamontology.org/operation_0546,Phylogenetic inference (minimum distance methods), -http://edamontology.org/operation_0547,Phylogenetic inference (maximum likelihood and Bayesian methods), -http://edamontology.org/operation_0548,Phylogenetic inference (quartet methods), -http://edamontology.org/operation_0549,Phylogenetic inference (AI methods), -http://edamontology.org/operation_0550,DNA substitution modelling, -http://edamontology.org/operation_0551,Phylogenetic tree topology analysis, -http://edamontology.org/operation_0552,Phylogenetic tree bootstrapping, -http://edamontology.org/operation_0553,Gene tree construction, -http://edamontology.org/operation_0554,Allele frequency distribution analysis, -http://edamontology.org/operation_0555,Consensus tree construction, -http://edamontology.org/operation_0556,Phylogenetic sub/super tree construction, -http://edamontology.org/operation_0557,Phylogenetic tree distances calculation, -http://edamontology.org/operation_0558,Phylogenetic tree annotation, -http://edamontology.org/operation_0559,Immunogenicity prediction, -http://edamontology.org/operation_0560,DNA vaccine design, -http://edamontology.org/operation_0561,Sequence formatting, -http://edamontology.org/operation_0562,Sequence alignment formatting, -http://edamontology.org/operation_0563,Codon usage table formatting, -http://edamontology.org/operation_0564,Sequence visualisation, -http://edamontology.org/operation_0565,Sequence alignment visualisation, -http://edamontology.org/operation_0566,Sequence cluster visualisation, -http://edamontology.org/operation_0567,Phylogenetic tree visualisation, -http://edamontology.org/operation_0568,RNA secondary structure visualisation, -http://edamontology.org/operation_0569,Protein secondary structure visualisation, -http://edamontology.org/operation_0570,Structure visualisation, -http://edamontology.org/operation_0571,Expression data visualisation, -http://edamontology.org/operation_0572,Protein interaction network visualisation, -http://edamontology.org/operation_0573,Map drawing, -http://edamontology.org/operation_0574,Sequence motif rendering, -http://edamontology.org/operation_0575,Restriction map drawing, -http://edamontology.org/operation_0577,DNA linear map rendering, -http://edamontology.org/operation_0578,Plasmid map drawing, -http://edamontology.org/operation_0579,Operon drawing, -http://edamontology.org/operation_1768,Nucleic acid folding family identification, -http://edamontology.org/operation_1769,Nucleic acid folding energy calculation, -http://edamontology.org/operation_1774,Annotation retrieval, -http://edamontology.org/operation_1777,Protein function prediction, -http://edamontology.org/operation_1778,Protein function comparison, -http://edamontology.org/operation_1780,Sequence submission, -http://edamontology.org/operation_1781,Gene regulatory network analysis, -http://edamontology.org/operation_1812,Parsing, -http://edamontology.org/operation_1813,Sequence retrieval, -http://edamontology.org/operation_1814,Structure retrieval, -http://edamontology.org/operation_1816,Surface rendering, -http://edamontology.org/operation_1817,Protein atom surface calculation (accessible), -http://edamontology.org/operation_1818,Protein atom surface calculation (accessible molecular), -http://edamontology.org/operation_1819,Protein residue surface calculation (accessible), -http://edamontology.org/operation_1820,Protein residue surface calculation (vacuum accessible), -http://edamontology.org/operation_1821,Protein residue surface calculation (accessible molecular), -http://edamontology.org/operation_1822,Protein residue surface calculation (vacuum molecular), -http://edamontology.org/operation_1823,Protein surface calculation (accessible molecular), -http://edamontology.org/operation_1824,Protein surface calculation (accessible), -http://edamontology.org/operation_1825,Backbone torsion angle calculation, -http://edamontology.org/operation_1826,Full torsion angle calculation, -http://edamontology.org/operation_1827,Cysteine torsion angle calculation, -http://edamontology.org/operation_1828,Tau angle calculation, -http://edamontology.org/operation_1829,Cysteine bridge detection, -http://edamontology.org/operation_1830,Free cysteine detection, -http://edamontology.org/operation_1831,Metal-bound cysteine detection, -http://edamontology.org/operation_1832,Residue contact calculation (residue-nucleic acid), -http://edamontology.org/operation_1834,Protein-metal contact calculation, -http://edamontology.org/operation_1835,Residue contact calculation (residue-negative ion), -http://edamontology.org/operation_1836,Residue bump detection, -http://edamontology.org/operation_1837,Residue symmetry contact calculation, -http://edamontology.org/operation_1838,Residue contact calculation (residue-ligand), -http://edamontology.org/operation_1839,Salt bridge calculation, -http://edamontology.org/operation_1841,Rotamer likelihood prediction, -http://edamontology.org/operation_1842,Proline mutation value calculation, -http://edamontology.org/operation_1843,Residue packing validation, -http://edamontology.org/operation_1844,Protein geometry validation, -http://edamontology.org/operation_1845,PDB file sequence retrieval, -http://edamontology.org/operation_1846,HET group detection, -http://edamontology.org/operation_1847,DSSP secondary structure assignment, -http://edamontology.org/operation_1848,Structure formatting, -http://edamontology.org/operation_1850,Protein cysteine and disulfide bond assignment, -http://edamontology.org/operation_1913,Residue validation, -http://edamontology.org/operation_1914,Structure retrieval (water), -http://edamontology.org/operation_2008,siRNA duplex prediction, -http://edamontology.org/operation_2089,Sequence alignment refinement, -http://edamontology.org/operation_2120,Listfile processing, -http://edamontology.org/operation_2121,Sequence file editing, -http://edamontology.org/operation_2122,Sequence alignment file processing, -http://edamontology.org/operation_2123,Small molecule data processing, -http://edamontology.org/operation_2222,Data retrieval (ontology annotation), -http://edamontology.org/operation_2224,Data retrieval (ontology concept), -http://edamontology.org/operation_2233,Representative sequence identification, -http://edamontology.org/operation_2234,Structure file processing, -http://edamontology.org/operation_2237,Data retrieval (sequence profile), -http://edamontology.org/operation_2238,Statistical calculation, -http://edamontology.org/operation_2239,3D-1D scoring matrix generation, -http://edamontology.org/operation_2241,Transmembrane protein visualisation, -http://edamontology.org/operation_2246,Demonstration, -http://edamontology.org/operation_2264,Data retrieval (pathway or network), -http://edamontology.org/operation_2265,Data retrieval (identifier), -http://edamontology.org/operation_2284,Nucleic acid density plotting, -http://edamontology.org/operation_2403,Sequence analysis, -http://edamontology.org/operation_2404,Sequence motif analysis, -http://edamontology.org/operation_2405,Protein interaction data processing, -http://edamontology.org/operation_2406,Protein structure analysis, -http://edamontology.org/operation_2407,Annotation processing, -http://edamontology.org/operation_2408,Sequence feature analysis, -http://edamontology.org/operation_2409,Data handling, -http://edamontology.org/operation_2410,Gene expression analysis, -http://edamontology.org/operation_2411,Structural profile processing, -http://edamontology.org/operation_2412,Data index processing, -http://edamontology.org/operation_2413,Sequence profile processing, -http://edamontology.org/operation_2414,Protein function analysis, -http://edamontology.org/operation_2415,Protein folding analysis, -http://edamontology.org/operation_2416,Protein secondary structure analysis, -http://edamontology.org/operation_2417,Physicochemical property data processing, -http://edamontology.org/operation_2419,Primer and probe design, -http://edamontology.org/operation_2420,Operation (typed), -http://edamontology.org/operation_2421,Database search, -http://edamontology.org/operation_2422,Data retrieval, -http://edamontology.org/operation_2423,Prediction and recognition, -http://edamontology.org/operation_2424,Comparison, -http://edamontology.org/operation_2425,Optimisation and refinement, -http://edamontology.org/operation_2426,Modelling and simulation, -http://edamontology.org/operation_2427,Data handling, -http://edamontology.org/operation_2428,Validation, -http://edamontology.org/operation_2429,Mapping, -http://edamontology.org/operation_2430,Design, -http://edamontology.org/operation_2432,Microarray data processing, -http://edamontology.org/operation_2433,Codon usage table processing, -http://edamontology.org/operation_2434,Data retrieval (codon usage table), -http://edamontology.org/operation_2435,Gene expression profile processing, -http://edamontology.org/operation_2436,Gene-set enrichment analysis, -http://edamontology.org/operation_2437,Gene regulatory network prediction, -http://edamontology.org/operation_2438,Pathway or network processing, -http://edamontology.org/operation_2439,RNA secondary structure analysis, -http://edamontology.org/operation_2440,Structure processing (RNA), -http://edamontology.org/operation_2441,RNA structure prediction, -http://edamontology.org/operation_2442,DNA structure prediction, -http://edamontology.org/operation_2443,Phylogenetic tree processing, -http://edamontology.org/operation_2444,Protein secondary structure processing, -http://edamontology.org/operation_2445,Protein interaction network processing, -http://edamontology.org/operation_2446,Sequence processing, -http://edamontology.org/operation_2447,Sequence processing (protein), -http://edamontology.org/operation_2448,Sequence processing (nucleic acid), -http://edamontology.org/operation_2451,Sequence comparison, -http://edamontology.org/operation_2452,Sequence cluster processing, -http://edamontology.org/operation_2453,Feature table processing, -http://edamontology.org/operation_2454,Gene prediction, -http://edamontology.org/operation_2456,GPCR classification, -http://edamontology.org/operation_2457,GPCR coupling selectivity prediction, -http://edamontology.org/operation_2459,Structure processing (protein), -http://edamontology.org/operation_2460,Protein atom surface calculation, -http://edamontology.org/operation_2461,Protein residue surface calculation, -http://edamontology.org/operation_2462,Protein surface calculation, -http://edamontology.org/operation_2463,Sequence alignment processing, -http://edamontology.org/operation_2464,Protein-protein binding site prediction, -http://edamontology.org/operation_2465,Structure processing, -http://edamontology.org/operation_2466,Map annotation, -http://edamontology.org/operation_2467,Data retrieval (protein annotation), -http://edamontology.org/operation_2468,Data retrieval (phylogenetic tree), -http://edamontology.org/operation_2469,Data retrieval (protein interaction annotation), -http://edamontology.org/operation_2470,Data retrieval (protein family annotation), -http://edamontology.org/operation_2471,Data retrieval (RNA family annotation), -http://edamontology.org/operation_2472,Data retrieval (gene annotation), -http://edamontology.org/operation_2473,Data retrieval (genotype and phenotype annotation), -http://edamontology.org/operation_2474,Protein architecture comparison, -http://edamontology.org/operation_2475,Protein architecture recognition, -http://edamontology.org/operation_2476,Molecular dynamics, -http://edamontology.org/operation_2478,Nucleic acid sequence analysis, -http://edamontology.org/operation_2479,Protein sequence analysis, -http://edamontology.org/operation_2480,Structure analysis, -http://edamontology.org/operation_2481,Nucleic acid structure analysis, -http://edamontology.org/operation_2482,Secondary structure processing, -http://edamontology.org/operation_2483,Structure comparison, -http://edamontology.org/operation_2485,Helical wheel drawing, -http://edamontology.org/operation_2486,Topology diagram drawing, -http://edamontology.org/operation_2487,Protein structure comparison, -http://edamontology.org/operation_2488,Protein secondary structure comparison, -http://edamontology.org/operation_2489,Subcellular localisation prediction, -http://edamontology.org/operation_2490,Residue contact calculation (residue-residue), -http://edamontology.org/operation_2491,Hydrogen bond calculation (inter-residue), -http://edamontology.org/operation_2492,Protein interaction prediction, -http://edamontology.org/operation_2493,Codon usage data processing, -http://edamontology.org/operation_2495,Expression analysis, -http://edamontology.org/operation_2496,Gene regulatory network processing, -http://edamontology.org/operation_2497,Pathway or network analysis, -http://edamontology.org/operation_2498,Sequencing-based expression profile data analysis, -http://edamontology.org/operation_2499,Splicing analysis, -http://edamontology.org/operation_2500,Microarray raw data analysis, -http://edamontology.org/operation_2501,Nucleic acid analysis, -http://edamontology.org/operation_2502,Protein analysis, -http://edamontology.org/operation_2503,Sequence data processing, -http://edamontology.org/operation_2504,Structural data processing, -http://edamontology.org/operation_2505,Text processing, -http://edamontology.org/operation_2506,Protein sequence alignment analysis, -http://edamontology.org/operation_2507,Nucleic acid sequence alignment analysis, -http://edamontology.org/operation_2508,Nucleic acid sequence comparison, -http://edamontology.org/operation_2509,Protein sequence comparison, -http://edamontology.org/operation_2510,DNA back-translation, -http://edamontology.org/operation_2511,Sequence editing (nucleic acid), -http://edamontology.org/operation_2512,Sequence editing (protein), -http://edamontology.org/operation_2513,Sequence generation (nucleic acid), -http://edamontology.org/operation_2514,Sequence generation (protein), -http://edamontology.org/operation_2515,Nucleic acid sequence visualisation, -http://edamontology.org/operation_2516,Protein sequence visualisation, -http://edamontology.org/operation_2518,Nucleic acid structure comparison, -http://edamontology.org/operation_2519,Structure processing (nucleic acid), -http://edamontology.org/operation_2520,DNA mapping, -http://edamontology.org/operation_2521,Map data processing, -http://edamontology.org/operation_2574,Protein hydropathy calculation, -http://edamontology.org/operation_2575,Binding site prediction, -http://edamontology.org/operation_2844,Structure clustering, -http://edamontology.org/operation_2871,Sequence tagged site (STS) mapping, -http://edamontology.org/operation_2928,Alignment, -http://edamontology.org/operation_2929,Protein fragment weight comparison, -http://edamontology.org/operation_2930,Protein property comparison, -http://edamontology.org/operation_2931,Secondary structure comparison, -http://edamontology.org/operation_2932,Hopp and Woods plotting, -http://edamontology.org/operation_2934,Cluster textual view generation, -http://edamontology.org/operation_2935,Clustering profile plotting, -http://edamontology.org/operation_2936,Dendrograph plotting, -http://edamontology.org/operation_2937,Proximity map plotting, -http://edamontology.org/operation_2938,Dendrogram visualisation, -http://edamontology.org/operation_2939,Principal component visualisation, -http://edamontology.org/operation_2940,Scatter plot plotting, -http://edamontology.org/operation_2941,Whole microarray graph plotting, -http://edamontology.org/operation_2942,Treemap visualisation, -http://edamontology.org/operation_2943,Box-Whisker plot plotting, -http://edamontology.org/operation_2944,Physical mapping, -http://edamontology.org/operation_2945,Analysis, -http://edamontology.org/operation_2946,Alignment analysis, -http://edamontology.org/operation_2947,Article analysis, -http://edamontology.org/operation_2948,Molecular interaction analysis, -http://edamontology.org/operation_2949,Protein-protein interaction analysis, -http://edamontology.org/operation_2950,Residue distance calculation, -http://edamontology.org/operation_2951,Alignment processing, -http://edamontology.org/operation_2952,Structure alignment processing, -http://edamontology.org/operation_2962,Codon usage bias calculation, -http://edamontology.org/operation_2963,Codon usage bias plotting, -http://edamontology.org/operation_2964,Codon usage fraction calculation, -http://edamontology.org/operation_2990,Classification, -http://edamontology.org/operation_2993,Molecular interaction data processing, -http://edamontology.org/operation_2995,Sequence classification, -http://edamontology.org/operation_2996,Structure classification, -http://edamontology.org/operation_2997,Protein comparison, -http://edamontology.org/operation_2998,Nucleic acid comparison, -http://edamontology.org/operation_3023,Prediction and recognition (protein), -http://edamontology.org/operation_3024,Prediction and recognition (nucleic acid), -http://edamontology.org/operation_3080,Structure editing, -http://edamontology.org/operation_3081,Sequence alignment editing, -http://edamontology.org/operation_3083,Pathway or network visualisation, -http://edamontology.org/operation_3084,Protein function prediction (from sequence), -http://edamontology.org/operation_3087,Protein sequence feature detection, -http://edamontology.org/operation_3088,Protein property calculation (from sequence), -http://edamontology.org/operation_3090,Protein feature prediction (from structure), -http://edamontology.org/operation_3092,Protein feature detection, -http://edamontology.org/operation_3093,Database search (by sequence), -http://edamontology.org/operation_3094,Protein interaction network prediction, -http://edamontology.org/operation_3095,Nucleic acid design, -http://edamontology.org/operation_3096,Editing, -http://edamontology.org/operation_3180,Sequence assembly validation, -http://edamontology.org/operation_3182,Genome alignment, -http://edamontology.org/operation_3183,Localised reassembly, -http://edamontology.org/operation_3184,Sequence assembly visualisation, -http://edamontology.org/operation_3185,Base-calling, -http://edamontology.org/operation_3186,Bisulfite mapping, -http://edamontology.org/operation_3187,Sequence contamination filtering, -http://edamontology.org/operation_3189,Trim ends, -http://edamontology.org/operation_3190,Trim vector, -http://edamontology.org/operation_3191,Trim to reference, -http://edamontology.org/operation_3192,Sequence trimming, -http://edamontology.org/operation_3194,Genome feature comparison, -http://edamontology.org/operation_3195,Sequencing error detection, -http://edamontology.org/operation_3196,Genotyping, -http://edamontology.org/operation_3197,Genetic variation analysis, -http://edamontology.org/operation_3198,Read mapping, -http://edamontology.org/operation_3199,Split read mapping, -http://edamontology.org/operation_3200,DNA barcoding, -http://edamontology.org/operation_3201,SNP calling, -http://edamontology.org/operation_3202,Polymorphism detection, -http://edamontology.org/operation_3203,Chromatogram visualisation, -http://edamontology.org/operation_3204,Methylation analysis, -http://edamontology.org/operation_3205,Methylation calling, -http://edamontology.org/operation_3206,Whole genome methylation analysis, -http://edamontology.org/operation_3207,Gene methylation analysis, -http://edamontology.org/operation_3208,Genome visualisation, -http://edamontology.org/operation_3209,Genome comparison, -http://edamontology.org/operation_3211,Genome indexing, -http://edamontology.org/operation_3212,Genome indexing (Burrows-Wheeler), -http://edamontology.org/operation_3213,Genome indexing (suffix arrays), -http://edamontology.org/operation_3214,Spectral analysis, -http://edamontology.org/operation_3215,Peak detection, -http://edamontology.org/operation_3216,Scaffolding, -http://edamontology.org/operation_3217,Scaffold gap completion, -http://edamontology.org/operation_3218,Sequencing quality control, -http://edamontology.org/operation_3219,Read pre-processing, -http://edamontology.org/operation_3221,Species frequency estimation, -http://edamontology.org/operation_3222,Peak calling, -http://edamontology.org/operation_3223,Differential gene expression profiling, -http://edamontology.org/operation_3224,Gene set testing, -http://edamontology.org/operation_3225,Variant classification, -http://edamontology.org/operation_3226,Variant prioritisation, -http://edamontology.org/operation_3227,Variant calling, -http://edamontology.org/operation_3228,Structural variation detection, -http://edamontology.org/operation_3229,Exome assembly, -http://edamontology.org/operation_3230,Read depth analysis, -http://edamontology.org/operation_3232,Gene expression QTL analysis, -http://edamontology.org/operation_3233,Copy number estimation, -http://edamontology.org/operation_3237,Primer removal, -http://edamontology.org/operation_3258,Transcriptome assembly, -http://edamontology.org/operation_3259,Transcriptome assembly (de novo), -http://edamontology.org/operation_3260,Transcriptome assembly (mapping), -http://edamontology.org/operation_3267,Sequence coordinate conversion, -http://edamontology.org/operation_3278,Document similarity calculation, -http://edamontology.org/operation_3279,Document clustering, -http://edamontology.org/operation_3280,Named-entity and concept recognition, -http://edamontology.org/operation_3282,ID mapping, -http://edamontology.org/operation_3283,Anonymisation, -http://edamontology.org/operation_3289,ID retrieval, -http://edamontology.org/operation_3348,Sequence checksum generation, -http://edamontology.org/operation_3349,Bibliography generation, -http://edamontology.org/operation_3350,Protein quaternary structure prediction, -http://edamontology.org/operation_3351,Molecular surface analysis, -http://edamontology.org/operation_3352,Ontology comparison, -http://edamontology.org/operation_3353,Ontology comparison, -http://edamontology.org/operation_3357,Format detection, -http://edamontology.org/operation_3359,Splitting, -http://edamontology.org/operation_3429,Generation, -http://edamontology.org/operation_3430,Nucleic acid sequence feature detection, -http://edamontology.org/operation_3431,Deposition, -http://edamontology.org/operation_3432,Clustering, -http://edamontology.org/operation_3433,Assembly, -http://edamontology.org/operation_3434,Conversion, -http://edamontology.org/operation_3435,Standardisation and normalisation, -http://edamontology.org/operation_3436,Aggregation, -http://edamontology.org/operation_3437,Article comparison, -http://edamontology.org/operation_3438,Calculation, -http://edamontology.org/operation_3439,Pathway or network prediction, -http://edamontology.org/operation_3440,Genome assembly, -http://edamontology.org/operation_3441,Plotting, -http://edamontology.org/operation_3443,Image analysis, -http://edamontology.org/operation_3445,Diffraction data analysis, -http://edamontology.org/operation_3446,Cell migration analysis, -http://edamontology.org/operation_3447,Diffraction data reduction, -http://edamontology.org/operation_3450,Neurite measurement, -http://edamontology.org/operation_3453,Diffraction data integration, -http://edamontology.org/operation_3454,Phasing, -http://edamontology.org/operation_3455,Molecular replacement, -http://edamontology.org/operation_3456,Rigid body refinement, -http://edamontology.org/operation_3457,Single particle analysis, -http://edamontology.org/operation_3458,Single particle alignment and classification, -http://edamontology.org/operation_3459,Functional clustering, -http://edamontology.org/operation_3460,Taxonomic classification, -http://edamontology.org/operation_3461,Virulence prediction, -http://edamontology.org/operation_3463,Expression correlation analysis, -http://edamontology.org/operation_3465,Correlation, -http://edamontology.org/operation_3469,RNA structure covariance model generation, -http://edamontology.org/operation_3470,RNA secondary structure prediction (shape-based), -http://edamontology.org/operation_3471,Nucleic acid folding prediction (alignment-based), -http://edamontology.org/operation_3472,k-mer counting, -http://edamontology.org/operation_3478,Phylogenetic reconstruction, -http://edamontology.org/operation_3480,Probabilistic data generation, -http://edamontology.org/operation_3481,Probabilistic sequence generation, -http://edamontology.org/operation_3482,Antimicrobial resistance prediction, -http://edamontology.org/operation_3501,Enrichment analysis, -http://edamontology.org/operation_3502,Chemical similarity enrichment, -http://edamontology.org/operation_3503,Incident curve plotting, -http://edamontology.org/operation_3504,Variant pattern analysis, -http://edamontology.org/operation_3545,Mathematical modelling, -http://edamontology.org/operation_3552,Microscope image visualisation, -http://edamontology.org/operation_3553,Image annotation, -http://edamontology.org/operation_3557,Imputation, -http://edamontology.org/operation_3559,Ontology visualisation, -http://edamontology.org/operation_3560,Maximum occurence analysis, -http://edamontology.org/operation_3561,Database comparison, -http://edamontology.org/operation_3562,Network simulation, -http://edamontology.org/operation_3563,RNA-seq read count analysis, -http://edamontology.org/operation_3564,Chemical redundancy removal, -http://edamontology.org/operation_3565,RNA-seq time series data analysis, -http://edamontology.org/operation_3566,Simulated gene expression data generation, -http://edamontology.org/operation_3625,Relation extraction, -http://edamontology.org/operation_3627,Mass spectra calibration, -http://edamontology.org/operation_3628,Chromatographic alignment, -http://edamontology.org/operation_3629,Deisotoping, -http://edamontology.org/operation_3630,Protein quantification, -http://edamontology.org/operation_3631,Peptide identification, -http://edamontology.org/operation_3632,Isotopic distributions calculation, -http://edamontology.org/operation_3633,Retention time prediction, -http://edamontology.org/operation_3634,Label-free quantification, -http://edamontology.org/operation_3635,Labeled quantification, -http://edamontology.org/operation_3636,MRM/SRM, -http://edamontology.org/operation_3637,Spectral counting, -http://edamontology.org/operation_3638,SILAC, -http://edamontology.org/operation_3639,iTRAQ, -http://edamontology.org/operation_3640,18O labeling, -http://edamontology.org/operation_3641,TMT-tag, -http://edamontology.org/operation_3642,Dimethyl, -http://edamontology.org/operation_3643,Tag-based peptide identification, -http://edamontology.org/operation_3644,de Novo sequencing, -http://edamontology.org/operation_3645,PTM identification, -http://edamontology.org/operation_3646,Peptide database search, -http://edamontology.org/operation_3647,Blind peptide database search, -http://edamontology.org/operation_3648,Validation of peptide-spectrum matches, -http://edamontology.org/operation_3649,Target-Decoy, -http://edamontology.org/operation_3658,Statistical inference, -http://edamontology.org/operation_3659,Regression analysis, -http://edamontology.org/operation_3660,Metabolic network modelling, -http://edamontology.org/operation_3661,SNP annotation, -http://edamontology.org/operation_3662,Ab-initio gene prediction, -http://edamontology.org/operation_3663,Homology-based gene prediction, -http://edamontology.org/operation_3664,Statistical modelling, -http://edamontology.org/operation_3666,Molecular surface comparison, -http://edamontology.org/operation_3672,Gene functional annotation, -http://edamontology.org/operation_3675,Variant filtering, -http://edamontology.org/operation_3677,Differential binding analysis, -http://edamontology.org/operation_3680,RNA-Seq analysis, -http://edamontology.org/operation_3694,Mass spectrum visualisation, -http://edamontology.org/operation_3695,Filtering, -http://edamontology.org/operation_3703,Reference identification, -http://edamontology.org/operation_3704,Ion counting, -http://edamontology.org/operation_3705,Isotope-coded protein label, -http://edamontology.org/operation_3715,Metabolic labeling, -http://edamontology.org/operation_3730,Cross-assembly, -http://edamontology.org/operation_3731,Sample comparison, -http://edamontology.org/operation_3741,Differential protein expression profiling, -http://edamontology.org/operation_3742,Differential gene expression analysis, -http://edamontology.org/operation_3744,Multiple sample visualisation, -http://edamontology.org/operation_3745,Ancestral reconstruction, -http://edamontology.org/operation_3755,PTM localisation, -http://edamontology.org/operation_3760,Service management, -http://edamontology.org/operation_3761,Service discovery, -http://edamontology.org/operation_3762,Service composition, -http://edamontology.org/operation_3763,Service invocation, -http://edamontology.org/operation_3766,Weighted correlation network analysis, -http://edamontology.org/operation_3767,Protein identification, -http://edamontology.org/operation_3778,Text annotation, -http://edamontology.org/operation_3791,Collapsing methods, -http://edamontology.org/operation_3792,miRNA expression analysis, -http://edamontology.org/operation_3793,Read summarisation, -http://edamontology.org/operation_3795,In vitro selection, -http://edamontology.org/operation_3797,Rarefaction, -http://edamontology.org/operation_3798,Read binning, -http://edamontology.org/operation_3799,Quantification, -http://edamontology.org/operation_3800,RNA-Seq quantification, -http://edamontology.org/operation_3801,Spectral library search, -http://edamontology.org/operation_3802,Sorting, -http://edamontology.org/operation_3803,Natural product identification, -http://edamontology.org/operation_3809,DMR identification, -http://edamontology.org/operation_3840,Multilocus sequence typing, -http://edamontology.org/operation_3860,Spectrum calculation, -http://edamontology.org/operation_3890,Trajectory visualization, -http://edamontology.org/operation_3891,Essential dynamics, -http://edamontology.org/operation_3893,Forcefield parameterisation, -http://edamontology.org/operation_3894,DNA profiling, -http://edamontology.org/operation_3896,Active site prediction, -http://edamontology.org/operation_3897,Ligand-binding site prediction, -http://edamontology.org/operation_3898,Metal-binding site prediction, -http://edamontology.org/operation_3899,Protein-protein docking, -http://edamontology.org/operation_3900,DNA-binding protein prediction, -http://edamontology.org/operation_3901,RNA-binding protein prediction, -http://edamontology.org/operation_3902,RNA binding site prediction, -http://edamontology.org/operation_3903,DNA binding site prediction, -http://edamontology.org/operation_3904,Protein disorder prediction, -http://edamontology.org/operation_3907,Information extraction, -http://edamontology.org/operation_3908,Information retrieval, -http://edamontology.org/operation_3918,Genome analysis, -http://edamontology.org/operation_3919,Methylation calling, -http://edamontology.org/operation_3920,DNA testing, -http://edamontology.org/operation_3921,Sequence read processing, -http://edamontology.org/operation_3923,Genome resequencing, -http://edamontology.org/operation_3925,Network visualisation, -http://edamontology.org/operation_3926,Pathway visualisation, -http://edamontology.org/operation_3927,Network analysis, -http://edamontology.org/operation_3928,Pathway analysis, -http://edamontology.org/operation_3929,Metabolic pathway prediction, -http://edamontology.org/operation_3931,Chemometrics, -http://edamontology.org/operation_3933,Demultiplexing, -http://edamontology.org/operation_3935,Dimensionality reduction, -http://edamontology.org/operation_3936,Feature selection, -http://edamontology.org/operation_3937,Feature extraction, -http://edamontology.org/operation_3938,Virtual screening, -http://edamontology.org/operation_3939,Metabolic engineering, -http://edamontology.org/operation_3942,Tree dating, -http://edamontology.org/operation_3946,Ecological modelling, -http://edamontology.org/operation_3947,Phylogenetic tree reconciliation, -http://edamontology.org/operation_3950,Selection detection, -http://edamontology.org/operation_3960,Principal component analysis, -http://edamontology.org/operation_3961,Copy number variation detection, -http://edamontology.org/operation_3962,Deletion detection, -http://edamontology.org/operation_3963,Duplication detection, -http://edamontology.org/operation_3964,Complex CNV detection, -http://edamontology.org/operation_3965,Amplification detection, -http://edamontology.org/operation_3968,Adhesin prediction, -http://edamontology.org/operation_4008,Protein design, -http://edamontology.org/operation_4009,Small molecule design, -http://edamontology.org/topic_0003,Topic, -http://edamontology.org/topic_0077,Nucleic acids, -http://edamontology.org/topic_0078,Proteins, -http://edamontology.org/topic_0079,Metabolites, -http://edamontology.org/topic_0080,Sequence analysis, -http://edamontology.org/topic_0081,Structure analysis, -http://edamontology.org/topic_0082,Structure prediction, -http://edamontology.org/topic_0083,Alignment, -http://edamontology.org/topic_0084,Phylogeny, -http://edamontology.org/topic_0085,Functional genomics, -http://edamontology.org/topic_0089,Ontology and terminology, -http://edamontology.org/topic_0090,Information retrieval, -http://edamontology.org/topic_0091,Bioinformatics, -http://edamontology.org/topic_0092,Data visualisation, -http://edamontology.org/topic_0094,Nucleic acid thermodynamics, -http://edamontology.org/topic_0097,Nucleic acid structure analysis, -http://edamontology.org/topic_0099,RNA, -http://edamontology.org/topic_0100,Nucleic acid restriction, -http://edamontology.org/topic_0102,Mapping, -http://edamontology.org/topic_0107,Genetic codes and codon usage, -http://edamontology.org/topic_0108,Protein expression, -http://edamontology.org/topic_0109,Gene finding, -http://edamontology.org/topic_0110,Transcription, -http://edamontology.org/topic_0111,Promoters, -http://edamontology.org/topic_0112,Nucleic acid folding, -http://edamontology.org/topic_0114,Gene structure, -http://edamontology.org/topic_0121,Proteomics, -http://edamontology.org/topic_0122,Structural genomics, -http://edamontology.org/topic_0123,Protein properties, -http://edamontology.org/topic_0128,Protein interactions, -http://edamontology.org/topic_0130,"Protein folding, stability and design", -http://edamontology.org/topic_0133,Two-dimensional gel electrophoresis, -http://edamontology.org/topic_0134,Mass spectrometry, -http://edamontology.org/topic_0135,Protein microarrays, -http://edamontology.org/topic_0137,Protein hydropathy, -http://edamontology.org/topic_0140,Protein targeting and localisation, -http://edamontology.org/topic_0141,Protein cleavage sites and proteolysis, -http://edamontology.org/topic_0143,Protein structure comparison, -http://edamontology.org/topic_0144,Protein residue interactions, -http://edamontology.org/topic_0147,Protein-protein interactions, -http://edamontology.org/topic_0148,Protein-ligand interactions, -http://edamontology.org/topic_0149,Protein-nucleic acid interactions, -http://edamontology.org/topic_0150,Protein design, -http://edamontology.org/topic_0151,G protein-coupled receptors (GPCR), -http://edamontology.org/topic_0152,Carbohydrates, -http://edamontology.org/topic_0153,Lipids, -http://edamontology.org/topic_0154,Small molecules, -http://edamontology.org/topic_0156,Sequence editing, -http://edamontology.org/topic_0157,"Sequence composition, complexity and repeats", -http://edamontology.org/topic_0158,Sequence motifs, -http://edamontology.org/topic_0159,Sequence comparison, -http://edamontology.org/topic_0160,"Sequence sites, features and motifs", -http://edamontology.org/topic_0163,Sequence database search, -http://edamontology.org/topic_0164,Sequence clustering, -http://edamontology.org/topic_0166,Protein structural motifs and surfaces, -http://edamontology.org/topic_0167,Structural (3D) profiles, -http://edamontology.org/topic_0172,Protein structure prediction, -http://edamontology.org/topic_0173,Nucleic acid structure prediction, -http://edamontology.org/topic_0174,Ab initio structure prediction, -http://edamontology.org/topic_0175,Homology modelling, -http://edamontology.org/topic_0176,Molecular dynamics, -http://edamontology.org/topic_0177,Molecular docking, -http://edamontology.org/topic_0178,Protein secondary structure prediction, -http://edamontology.org/topic_0179,Protein tertiary structure prediction, -http://edamontology.org/topic_0180,Protein fold recognition, -http://edamontology.org/topic_0182,Sequence alignment, -http://edamontology.org/topic_0183,Structure alignment, -http://edamontology.org/topic_0184,Threading, -http://edamontology.org/topic_0188,Sequence profiles and HMMs, -http://edamontology.org/topic_0191,Phylogeny reconstruction, -http://edamontology.org/topic_0194,Phylogenomics, -http://edamontology.org/topic_0195,Virtual PCR, -http://edamontology.org/topic_0196,Sequence assembly, -http://edamontology.org/topic_0199,Genetic variation, -http://edamontology.org/topic_0200,Microarrays, -http://edamontology.org/topic_0202,Pharmacology, -http://edamontology.org/topic_0203,Gene expression, -http://edamontology.org/topic_0204,Gene regulation, -http://edamontology.org/topic_0208,Pharmacogenomics, -http://edamontology.org/topic_0209,Medicinal chemistry, -http://edamontology.org/topic_0210,Fish, -http://edamontology.org/topic_0211,Flies, -http://edamontology.org/topic_0213,Mice or rats, -http://edamontology.org/topic_0215,Worms, -http://edamontology.org/topic_0217,Literature analysis, -http://edamontology.org/topic_0218,Natural language processing, -http://edamontology.org/topic_0219,"Data submission, annotation and curation", -http://edamontology.org/topic_0220,"Document, record and content management", -http://edamontology.org/topic_0221,Sequence annotation, -http://edamontology.org/topic_0222,Genome annotation, -http://edamontology.org/topic_0593,NMR, -http://edamontology.org/topic_0594,Sequence classification, -http://edamontology.org/topic_0595,Protein classification, -http://edamontology.org/topic_0598,Sequence motif or profile, -http://edamontology.org/topic_0601,Protein modifications, -http://edamontology.org/topic_0602,"Molecular interactions, pathways and networks", -http://edamontology.org/topic_0605,Informatics, -http://edamontology.org/topic_0606,Literature data resources, -http://edamontology.org/topic_0607,Laboratory information management, -http://edamontology.org/topic_0608,Cell and tissue culture, -http://edamontology.org/topic_0610,Ecology, -http://edamontology.org/topic_0611,Electron microscopy, -http://edamontology.org/topic_0612,Cell cycle, -http://edamontology.org/topic_0613,Peptides and amino acids, -http://edamontology.org/topic_0616,Organelles, -http://edamontology.org/topic_0617,Ribosomes, -http://edamontology.org/topic_0618,Scents, -http://edamontology.org/topic_0620,Drugs and target structures, -http://edamontology.org/topic_0621,Model organisms, -http://edamontology.org/topic_0622,Genomics, -http://edamontology.org/topic_0623,Gene and protein families, -http://edamontology.org/topic_0624,Chromosomes, -http://edamontology.org/topic_0625,Genotype and phenotype, -http://edamontology.org/topic_0629,Gene expression and microarray, -http://edamontology.org/topic_0632,Probes and primers, -http://edamontology.org/topic_0634,Pathology, -http://edamontology.org/topic_0635,Specific protein resources, -http://edamontology.org/topic_0637,Taxonomy, -http://edamontology.org/topic_0639,Protein sequence analysis, -http://edamontology.org/topic_0640,Nucleic acid sequence analysis, -http://edamontology.org/topic_0641,Repeat sequences, -http://edamontology.org/topic_0642,Low complexity sequences, -http://edamontology.org/topic_0644,Proteome, -http://edamontology.org/topic_0654,DNA, -http://edamontology.org/topic_0655,Coding RNA, -http://edamontology.org/topic_0659,"Functional, regulatory and non-coding RNA", -http://edamontology.org/topic_0660,rRNA, -http://edamontology.org/topic_0663,tRNA, -http://edamontology.org/topic_0694,Protein secondary structure, -http://edamontology.org/topic_0697,RNA structure, -http://edamontology.org/topic_0698,Protein tertiary structure, -http://edamontology.org/topic_0722,Nucleic acid classification, -http://edamontology.org/topic_0724,Protein families, -http://edamontology.org/topic_0736,Protein folds and structural domains, -http://edamontology.org/topic_0740,Nucleic acid sequence alignment, -http://edamontology.org/topic_0741,Protein sequence alignment, -http://edamontology.org/topic_0747,Nucleic acid sites and features, -http://edamontology.org/topic_0748,Protein sites and features, -http://edamontology.org/topic_0749,Transcription factors and regulatory sites, -http://edamontology.org/topic_0751,Phosphorylation sites, -http://edamontology.org/topic_0753,Metabolic pathways, -http://edamontology.org/topic_0754,Signaling pathways, -http://edamontology.org/topic_0767,Protein and peptide identification, -http://edamontology.org/topic_0769,Workflows, -http://edamontology.org/topic_0770,Data types and objects, -http://edamontology.org/topic_0771,Theoretical biology, -http://edamontology.org/topic_0779,Mitochondria, -http://edamontology.org/topic_0780,Plant biology, -http://edamontology.org/topic_0781,Virology, -http://edamontology.org/topic_0782,Fungi, -http://edamontology.org/topic_0783,Pathogens, -http://edamontology.org/topic_0786,Arabidopsis, -http://edamontology.org/topic_0787,Rice, -http://edamontology.org/topic_0796,Genetic mapping and linkage, -http://edamontology.org/topic_0797,Comparative genomics, -http://edamontology.org/topic_0798,Mobile genetic elements, -http://edamontology.org/topic_0803,Human disease, -http://edamontology.org/topic_0804,Immunology, -http://edamontology.org/topic_0820,Membrane and lipoproteins, -http://edamontology.org/topic_0821,Enzymes, -http://edamontology.org/topic_0922,Primers, -http://edamontology.org/topic_1302,PolyA signal or sites, -http://edamontology.org/topic_1304,CpG island and isochores, -http://edamontology.org/topic_1305,Restriction sites, -http://edamontology.org/topic_1307,Splice sites, -http://edamontology.org/topic_1308,Matrix/scaffold attachment sites, -http://edamontology.org/topic_1311,Operon, -http://edamontology.org/topic_1312,Promoters, -http://edamontology.org/topic_1317,Structural biology, -http://edamontology.org/topic_1456,Protein membrane regions, -http://edamontology.org/topic_1770,Structure comparison, -http://edamontology.org/topic_1775,Function analysis, -http://edamontology.org/topic_1811,Prokaryotes and Archaea, -http://edamontology.org/topic_2225,Protein databases, -http://edamontology.org/topic_2226,Structure determination, -http://edamontology.org/topic_2229,Cell biology, -http://edamontology.org/topic_2230,Classification, -http://edamontology.org/topic_2232,Lipoproteins, -http://edamontology.org/topic_2257,Phylogeny visualisation, -http://edamontology.org/topic_2258,Cheminformatics, -http://edamontology.org/topic_2259,Systems biology, -http://edamontology.org/topic_2269,Statistics and probability, -http://edamontology.org/topic_2271,Structure database search, -http://edamontology.org/topic_2275,Molecular modelling, -http://edamontology.org/topic_2276,Protein function prediction, -http://edamontology.org/topic_2277,SNP, -http://edamontology.org/topic_2278,Transmembrane protein prediction, -http://edamontology.org/topic_2280,Nucleic acid structure comparison, -http://edamontology.org/topic_2397,Exons, -http://edamontology.org/topic_2399,Gene transcription, -http://edamontology.org/topic_2533,DNA mutation, -http://edamontology.org/topic_2640,Oncology, -http://edamontology.org/topic_2661,Toxins and targets, -http://edamontology.org/topic_2754,Introns, -http://edamontology.org/topic_2807,Tool topic, -http://edamontology.org/topic_2809,Study topic, -http://edamontology.org/topic_2811,Nomenclature, -http://edamontology.org/topic_2813,Disease genes and proteins, -http://edamontology.org/topic_2814,Protein structure analysis, -http://edamontology.org/topic_2815,Human biology, -http://edamontology.org/topic_2816,Gene resources, -http://edamontology.org/topic_2817,Yeast, -http://edamontology.org/topic_2818,Eukaryotes, -http://edamontology.org/topic_2819,Invertebrates, -http://edamontology.org/topic_2820,Vertebrates, -http://edamontology.org/topic_2821,Unicellular eukaryotes, -http://edamontology.org/topic_2826,Protein structure alignment, -http://edamontology.org/topic_2828,X-ray diffraction, -http://edamontology.org/topic_2829,"Ontologies, nomenclature and classification", -http://edamontology.org/topic_2830,Immunoproteins and antigens, -http://edamontology.org/topic_2839,Molecules, -http://edamontology.org/topic_2840,Toxicology, -http://edamontology.org/topic_2842,High-throughput sequencing, -http://edamontology.org/topic_2846,Gene regulatory networks, -http://edamontology.org/topic_2847,Disease (specific), -http://edamontology.org/topic_2867,VNTR, -http://edamontology.org/topic_2868,Microsatellites, -http://edamontology.org/topic_2869,RFLP, -http://edamontology.org/topic_2885,DNA polymorphism, -http://edamontology.org/topic_2953,Nucleic acid design, -http://edamontology.org/topic_3032,Primer or probe design, -http://edamontology.org/topic_3038,Structure databases, -http://edamontology.org/topic_3039,Nucleic acid structure, -http://edamontology.org/topic_3041,Sequence databases, -http://edamontology.org/topic_3042,Nucleic acid sequences, -http://edamontology.org/topic_3043,Protein sequences, -http://edamontology.org/topic_3044,Protein interaction networks, -http://edamontology.org/topic_3047,Molecular biology, -http://edamontology.org/topic_3048,Mammals, -http://edamontology.org/topic_3050,Biodiversity, -http://edamontology.org/topic_3052,Sequence clusters and classification, -http://edamontology.org/topic_3053,Genetics, -http://edamontology.org/topic_3055,Quantitative genetics, -http://edamontology.org/topic_3056,Population genetics, -http://edamontology.org/topic_3060,Regulatory RNA, -http://edamontology.org/topic_3061,Documentation and help, -http://edamontology.org/topic_3062,Genetic organisation, -http://edamontology.org/topic_3063,Medical informatics, -http://edamontology.org/topic_3064,Developmental biology, -http://edamontology.org/topic_3065,Embryology, -http://edamontology.org/topic_3067,Anatomy, -http://edamontology.org/topic_3068,Literature and language, -http://edamontology.org/topic_3070,Biology, -http://edamontology.org/topic_3071,Biological databases, -http://edamontology.org/topic_3072,Sequence feature detection, -http://edamontology.org/topic_3073,Nucleic acid feature detection, -http://edamontology.org/topic_3074,Protein feature detection, -http://edamontology.org/topic_3075,Biological system modelling, -http://edamontology.org/topic_3077,Data acquisition, -http://edamontology.org/topic_3078,Genes and proteins resources, -http://edamontology.org/topic_3118,Protein topological domains, -http://edamontology.org/topic_3120,Protein variants, -http://edamontology.org/topic_3123,Expression signals, -http://edamontology.org/topic_3125,DNA binding sites, -http://edamontology.org/topic_3126,Nucleic acid repeats, -http://edamontology.org/topic_3127,DNA replication and recombination, -http://edamontology.org/topic_3135,Signal or transit peptide, -http://edamontology.org/topic_3139,Sequence tagged sites, -http://edamontology.org/topic_3168,Sequencing, -http://edamontology.org/topic_3169,ChIP-seq, -http://edamontology.org/topic_3170,RNA-Seq, -http://edamontology.org/topic_3171,DNA methylation, -http://edamontology.org/topic_3172,Metabolomics, -http://edamontology.org/topic_3173,Epigenomics, -http://edamontology.org/topic_3174,Metagenomics, -http://edamontology.org/topic_3175,Structural variation, -http://edamontology.org/topic_3176,DNA packaging, -http://edamontology.org/topic_3177,DNA-Seq, -http://edamontology.org/topic_3178,RNA-Seq alignment, -http://edamontology.org/topic_3179,ChIP-on-chip, -http://edamontology.org/topic_3263,Data security, -http://edamontology.org/topic_3277,Sample collections, -http://edamontology.org/topic_3292,Biochemistry, -http://edamontology.org/topic_3293,Phylogenetics, -http://edamontology.org/topic_3295,Epigenetics, -http://edamontology.org/topic_3297,Biotechnology, -http://edamontology.org/topic_3298,Phenomics, -http://edamontology.org/topic_3299,Evolutionary biology, -http://edamontology.org/topic_3300,Physiology, -http://edamontology.org/topic_3301,Microbiology, -http://edamontology.org/topic_3302,Parasitology, -http://edamontology.org/topic_3303,Medicine, -http://edamontology.org/topic_3304,Neurobiology, -http://edamontology.org/topic_3305,Public health and epidemiology, -http://edamontology.org/topic_3306,Biophysics, -http://edamontology.org/topic_3307,Computational biology, -http://edamontology.org/topic_3308,Transcriptomics, -http://edamontology.org/topic_3314,Chemistry, -http://edamontology.org/topic_3315,Mathematics, -http://edamontology.org/topic_3316,Computer science, -http://edamontology.org/topic_3318,Physics, -http://edamontology.org/topic_3320,RNA splicing, -http://edamontology.org/topic_3321,Molecular genetics, -http://edamontology.org/topic_3322,Respiratory medicine, -http://edamontology.org/topic_3323,Metabolic disease, -http://edamontology.org/topic_3324,Infectious disease, -http://edamontology.org/topic_3325,Rare diseases, -http://edamontology.org/topic_3332,Computational chemistry, -http://edamontology.org/topic_3334,Neurology, -http://edamontology.org/topic_3335,Cardiology, -http://edamontology.org/topic_3336,Drug discovery, -http://edamontology.org/topic_3337,Biobank, -http://edamontology.org/topic_3338,Mouse clinic, -http://edamontology.org/topic_3339,Microbial collection, -http://edamontology.org/topic_3340,Cell culture collection, -http://edamontology.org/topic_3341,Clone library, -http://edamontology.org/topic_3342,Translational medicine, -http://edamontology.org/topic_3343,Compound libraries and screening, -http://edamontology.org/topic_3344,Biomedical science, -http://edamontology.org/topic_3345,Data identity and mapping, -http://edamontology.org/topic_3346,Sequence search, -http://edamontology.org/topic_3360,Biomarkers, -http://edamontology.org/topic_3361,Laboratory techniques, -http://edamontology.org/topic_3365,"Data architecture, analysis and design", -http://edamontology.org/topic_3366,Data integration and warehousing, -http://edamontology.org/topic_3368,Biomaterials, -http://edamontology.org/topic_3369,Chemical biology, -http://edamontology.org/topic_3370,Analytical chemistry, -http://edamontology.org/topic_3371,Synthetic chemistry, -http://edamontology.org/topic_3372,Software engineering, -http://edamontology.org/topic_3373,Drug development, -http://edamontology.org/topic_3374,Biotherapeutics, -http://edamontology.org/topic_3375,Drug metabolism, -http://edamontology.org/topic_3376,Medicines research and development, -http://edamontology.org/topic_3377,Safety sciences, -http://edamontology.org/topic_3378,Pharmacovigilance, -http://edamontology.org/topic_3379,Preclinical and clinical studies, -http://edamontology.org/topic_3382,Imaging, -http://edamontology.org/topic_3383,Bioimaging, -http://edamontology.org/topic_3384,Medical imaging, -http://edamontology.org/topic_3385,Light microscopy, -http://edamontology.org/topic_3386,Laboratory animal science, -http://edamontology.org/topic_3387,Marine biology, -http://edamontology.org/topic_3388,Molecular medicine, -http://edamontology.org/topic_3390,Nutritional science, -http://edamontology.org/topic_3391,Omics, -http://edamontology.org/topic_3393,Quality affairs, -http://edamontology.org/topic_3394,Regulatory affairs, -http://edamontology.org/topic_3395,Regenerative medicine, -http://edamontology.org/topic_3396,Systems medicine, -http://edamontology.org/topic_3397,Veterinary medicine, -http://edamontology.org/topic_3398,Bioengineering, -http://edamontology.org/topic_3399,Geriatric medicine, -http://edamontology.org/topic_3400,"Allergy, clinical immunology and immunotherapeutics", -http://edamontology.org/topic_3401,Pain medicine, -http://edamontology.org/topic_3402,Anaesthesiology, -http://edamontology.org/topic_3403,Critical care medicine, -http://edamontology.org/topic_3404,Dermatology, -http://edamontology.org/topic_3405,Dentistry, -http://edamontology.org/topic_3406,"Ear, nose and throat medicine", -http://edamontology.org/topic_3407,Endocrinology and metabolism, -http://edamontology.org/topic_3408,Haematology, -http://edamontology.org/topic_3409,Gastroenterology, -http://edamontology.org/topic_3410,Gender medicine, -http://edamontology.org/topic_3411,Gynaecology and obstetrics, -http://edamontology.org/topic_3412,Hepatic and biliary medicine, -http://edamontology.org/topic_3413,Infectious tropical disease, -http://edamontology.org/topic_3414,Trauma medicine, -http://edamontology.org/topic_3415,Medical toxicology, -http://edamontology.org/topic_3416,Musculoskeletal medicine, -http://edamontology.org/topic_3417,Opthalmology, -http://edamontology.org/topic_3418,Paediatrics, -http://edamontology.org/topic_3419,Psychiatry, -http://edamontology.org/topic_3420,Reproductive health, -http://edamontology.org/topic_3421,Surgery, -http://edamontology.org/topic_3422,Urology and nephrology, -http://edamontology.org/topic_3423,Complementary medicine, -http://edamontology.org/topic_3444,MRI, -http://edamontology.org/topic_3448,Neutron diffraction, -http://edamontology.org/topic_3452,Tomography, -http://edamontology.org/topic_3473,Data mining, -http://edamontology.org/topic_3474,Machine learning, -http://edamontology.org/topic_3489,Database management, -http://edamontology.org/topic_3500,Zoology, -http://edamontology.org/topic_3510,"Protein sites, features and motifs", -http://edamontology.org/topic_3511,"Nucleic acid sites, features and motifs", -http://edamontology.org/topic_3512,Gene transcripts, -http://edamontology.org/topic_3514,Protein-ligand interactions, -http://edamontology.org/topic_3515,Protein-drug interactions, -http://edamontology.org/topic_3516,Genotyping experiment, -http://edamontology.org/topic_3517,GWAS study, -http://edamontology.org/topic_3518,Microarray experiment, -http://edamontology.org/topic_3519,PCR experiment, -http://edamontology.org/topic_3520,Proteomics experiment, -http://edamontology.org/topic_3521,2D PAGE experiment, -http://edamontology.org/topic_3522,Northern blot experiment, -http://edamontology.org/topic_3523,RNAi experiment, -http://edamontology.org/topic_3524,Simulation experiment, -http://edamontology.org/topic_3525,Protein-nucleic acid interactions, -http://edamontology.org/topic_3526,Protein-protein interactions, -http://edamontology.org/topic_3527,Cellular process pathways, -http://edamontology.org/topic_3528,Disease pathways, -http://edamontology.org/topic_3529,Environmental information processing pathways, -http://edamontology.org/topic_3530,Genetic information processing pathways, -http://edamontology.org/topic_3531,Protein super-secondary structure, -http://edamontology.org/topic_3533,Protein active sites, -http://edamontology.org/topic_3534,Protein binding sites, -http://edamontology.org/topic_3535,Protein-nucleic acid binding sites, -http://edamontology.org/topic_3536,Protein cleavage sites, -http://edamontology.org/topic_3537,Protein chemical modifications, -http://edamontology.org/topic_3538,Protein disordered structure, -http://edamontology.org/topic_3539,Protein domains, -http://edamontology.org/topic_3540,Protein key folding sites, -http://edamontology.org/topic_3541,Protein post-translational modifications, -http://edamontology.org/topic_3542,Protein secondary structure, -http://edamontology.org/topic_3543,Protein sequence repeats, -http://edamontology.org/topic_3544,Protein signal peptides, -http://edamontology.org/topic_3569,Applied mathematics, -http://edamontology.org/topic_3570,Pure mathematics, -http://edamontology.org/topic_3571,Data governance, -http://edamontology.org/topic_3572,Data quality management, -http://edamontology.org/topic_3573,Freshwater biology, -http://edamontology.org/topic_3574,Human genetics, -http://edamontology.org/topic_3575,Tropical medicine, -http://edamontology.org/topic_3576,Medical biotechnology, -http://edamontology.org/topic_3577,Personalised medicine, -http://edamontology.org/topic_3656,Immunoprecipitation experiment, -http://edamontology.org/topic_3673,Whole genome sequencing, -http://edamontology.org/topic_3674,Methylated DNA immunoprecipitation, -http://edamontology.org/topic_3676,Exome sequencing, -http://edamontology.org/topic_3678,Experimental design and studies, -http://edamontology.org/topic_3679,Animal study, -http://edamontology.org/topic_3697,Microbial ecology, -http://edamontology.org/topic_3794,RNA immunoprecipitation, -http://edamontology.org/topic_3796,Population genomics, -http://edamontology.org/topic_3810,Agricultural science, -http://edamontology.org/topic_3837,Metagenomic sequencing, -http://edamontology.org/topic_3855,Environmental science, -http://edamontology.org/topic_3892,Biomolecular simulation, -http://edamontology.org/topic_3895,Synthetic biology, -http://edamontology.org/topic_3912,Genetic engineering, -http://edamontology.org/topic_3922,Proteogenomics, -http://edamontology.org/topic_3930,Immunogenetics, -http://edamontology.org/topic_3934,Cytometry, -http://edamontology.org/topic_3940,Chromosome conformation capture, -http://edamontology.org/topic_3941,Metatranscriptomics, -http://edamontology.org/topic_3943,Paleogenomics, -http://edamontology.org/topic_3944,Cladistics, -http://edamontology.org/topic_3945,Molecular evolution, -http://edamontology.org/topic_3948,Immunoinformatics, -http://edamontology.org/topic_3954,Echography, -http://edamontology.org/topic_3955,Fluxomics, -http://edamontology.org/topic_3957,Protein interaction experiment, -http://edamontology.org/topic_3958,Copy number variation, -http://edamontology.org/topic_3959,Cytogenetics, -http://edamontology.org/topic_3966,Vaccinology, -http://edamontology.org/topic_3967,Immunomics, -http://edamontology.org/topic_3974,Epistasis, -http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,Obsolete concept (EDAM), -http://www.w3.org/2002/07/owl#DeprecatedClass,DeprecatedClass diff --git a/nf_core/assets/get_latest_edam.sh b/nf_core/assets/get_latest_edam.sh new file mode 100644 index 0000000000..eeb46bdf2b --- /dev/null +++ b/nf_core/assets/get_latest_edam.sh @@ -0,0 +1,4 @@ +# Run the following command to update to the latest EDAM file +curl -4 -fsSL https://edamontology.org/EDAM.tsv | \ + awk -F'\t' 'NF>=15 && $15!="" {print $1,$2,$15}' \ + > nf_core/assets/EDAM.tsv diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index 461816bb39..fe5daf36a3 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -97,7 +97,7 @@ def get_installed_modules(directory: Path, repo_type="modules") -> tuple[list[st def load_edam(): """Load the EDAM ontology from the nf-core repository""" edam_formats = {} - local_path = Path(__file__).parent.parent / "assets" / "EDAM_1.25.csv" + local_path = Path(__file__).parent.parent / "assets" / "EDAM.tsv" try: with local_path.open("rb") as f: data_bytes = f.read() @@ -105,7 +105,7 @@ def load_edam(): log.warning(f"Failed to load EDAM ontology: {e}") return {} for line in data_bytes.splitlines(): - fields = line.decode("utf-8").split(",") + fields = line.decode("utf-8").split("\t") if fields[0].split("/")[-1].startswith("format") and fields[2]: # We choose an already provided extension extensions = fields[2].split("|") for extension in extensions: From db12b9c71f2a624ca215e1eb3eb831ad2f99d00c Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 11:08:36 +0200 Subject: [PATCH 04/13] Add edam_load test --- tests/modules/test_modules_utils.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/tests/modules/test_modules_utils.py b/tests/modules/test_modules_utils.py index 8ef8d9d404..aff464e2fe 100644 --- a/tests/modules/test_modules_utils.py +++ b/tests/modules/test_modules_utils.py @@ -82,3 +82,9 @@ def test_filter_modules_by_name_empty_list(self): filtered = nf_core.modules.modules_utils.filter_modules_by_name(modules, "fastqc") assert len(filtered) == 0 + + def test_load_edam(self): + """Test edam ontology loading""" + edam_formats = nf_core.modules.modules_utils.load_edam() + assert len(edam_formats) == 62 + assert len(edam_formats[1]) == 2 From bc839987dd20e2b32954504e1a48536dddd6a07e Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 11:19:19 +0200 Subject: [PATCH 05/13] Fix linting --- tests/modules/test_modules_utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/modules/test_modules_utils.py b/tests/modules/test_modules_utils.py index aff464e2fe..aba2eb3f79 100644 --- a/tests/modules/test_modules_utils.py +++ b/tests/modules/test_modules_utils.py @@ -82,7 +82,7 @@ def test_filter_modules_by_name_empty_list(self): filtered = nf_core.modules.modules_utils.filter_modules_by_name(modules, "fastqc") assert len(filtered) == 0 - + def test_load_edam(self): """Test edam ontology loading""" edam_formats = nf_core.modules.modules_utils.load_edam() From a8d97d0a669cacc07f0c441c61ff17b6d6d2a579 Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 12:12:19 +0200 Subject: [PATCH 06/13] Fix test --- nf_core/assets/EDAM.tsv | 124 ++++++++++++++-------------- nf_core/assets/get_latest_edam.sh | 2 +- tests/modules/test_modules_utils.py | 5 +- 3 files changed, 66 insertions(+), 65 deletions(-) diff --git a/nf_core/assets/EDAM.tsv b/nf_core/assets/EDAM.tsv index f77ef5c107..4fddf177a5 100644 --- a/nf_core/assets/EDAM.tsv +++ b/nf_core/assets/EDAM.tsv @@ -1,62 +1,62 @@ -Class ID Preferred Label File extension -http://edamontology.org/format_1930 FASTQ fq|fastq -http://edamontology.org/format_2332 XML xml -http://edamontology.org/format_3256 N-Triples nt -http://edamontology.org/format_3257 Notation3 n3 -http://edamontology.org/format_3261 RDF/XML rdf -http://edamontology.org/format_3464 JSON json -http://edamontology.org/format_3475 TSV tsv|tab -http://edamontology.org/format_3556 MHTML mhtml|mht|eml -http://edamontology.org/format_3665 K-mer countgraph oxlicg -http://edamontology.org/format_3682 imzML metadata file imzML -http://edamontology.org/format_3710 WIFF format wiff -http://edamontology.org/format_3746 BIOM format biom -http://edamontology.org/format_3749 JSON-LD jsonld -http://edamontology.org/format_3750 YAML yaml|yml -http://edamontology.org/format_3752 CSV csv -http://edamontology.org/format_3788 SQL sql -http://edamontology.org/format_3789 XQuery xq|xqy|xquery -http://edamontology.org/format_3839 ibd ibd -http://edamontology.org/format_3857 CWL cwl -http://edamontology.org/format_3911 msh msh -http://edamontology.org/format_3913 Loom loom -http://edamontology.org/format_3915 Zarr zarray|zgroup -http://edamontology.org/format_3916 MTX mtx -http://edamontology.org/format_3956 N-Quads nq -http://edamontology.org/format_3969 Vega json -http://edamontology.org/format_3970 Vega-lite json -http://edamontology.org/format_3972 BNGL bngl -http://edamontology.org/format_3973 Docker image format dockerfile -http://edamontology.org/format_3975 GFA 1 gfa -http://edamontology.org/format_3976 GFA 2 gfa -http://edamontology.org/format_3977 ObjTables xlsx -http://edamontology.org/format_3978 CONTIG contig -http://edamontology.org/format_3979 WEGO wego -http://edamontology.org/format_3980 RPKM rpkm -http://edamontology.org/format_3981 TAR format tar -http://edamontology.org/format_3982 CHAIN chain -http://edamontology.org/format_3983 NET net -http://edamontology.org/format_3984 QMAP qmap -http://edamontology.org/format_3985 gxformat2 ga -http://edamontology.org/format_3986 WMV wmv -http://edamontology.org/format_3987 ZIP format zip -http://edamontology.org/format_3988 LSM lsm -http://edamontology.org/format_3989 GZIP format gz|gzip -http://edamontology.org/format_3990 AVI avi -http://edamontology.org/format_3991 TrackDB trackDb -http://edamontology.org/format_3992 CIGAR format cigar -http://edamontology.org/format_3993 Stereolithography format stl -http://edamontology.org/format_3994 U3D u3d -http://edamontology.org/format_3995 Texture file format tex -http://edamontology.org/format_3996 Python script py -http://edamontology.org/format_3997 MPEG-4 mp4 -http://edamontology.org/format_3998 Perl script pl -http://edamontology.org/format_3999 R script R -http://edamontology.org/format_4000 R markdown Rmd -http://edamontology.org/format_4001 NIFTI format nii -http://edamontology.org/format_4002 pickle pickle -http://edamontology.org/format_4003 NumPy format npy -http://edamontology.org/format_4004 SimTools repertoire file format repz -http://edamontology.org/format_4005 Configuration file format cfg -http://edamontology.org/format_4006 Zstandard format zst -http://edamontology.org/format_4007 MATLAB script m +Class ID Preferred Label File extension +http://edamontology.org/format_1930 FASTQ fq|fastq +http://edamontology.org/format_2332 XML xml +http://edamontology.org/format_3256 N-Triples nt +http://edamontology.org/format_3257 Notation3 n3 +http://edamontology.org/format_3261 RDF/XML rdf +http://edamontology.org/format_3464 JSON json +http://edamontology.org/format_3475 TSV tsv|tab +http://edamontology.org/format_3556 MHTML mhtml|mht|eml +http://edamontology.org/format_3665 K-mer countgraph oxlicg +http://edamontology.org/format_3682 imzML metadata file imzML +http://edamontology.org/format_3710 WIFF format wiff +http://edamontology.org/format_3746 BIOM format biom +http://edamontology.org/format_3749 JSON-LD jsonld +http://edamontology.org/format_3750 YAML yaml|yml +http://edamontology.org/format_3752 CSV csv +http://edamontology.org/format_3788 SQL sql +http://edamontology.org/format_3789 XQuery xq|xqy|xquery +http://edamontology.org/format_3839 ibd ibd +http://edamontology.org/format_3857 CWL cwl +http://edamontology.org/format_3911 msh msh +http://edamontology.org/format_3913 Loom loom +http://edamontology.org/format_3915 Zarr zarray|zgroup +http://edamontology.org/format_3916 MTX mtx +http://edamontology.org/format_3956 N-Quads nq +http://edamontology.org/format_3969 Vega json +http://edamontology.org/format_3970 Vega-lite json +http://edamontology.org/format_3972 BNGL bngl +http://edamontology.org/format_3973 Docker image format dockerfile +http://edamontology.org/format_3975 GFA 1 gfa +http://edamontology.org/format_3976 GFA 2 gfa +http://edamontology.org/format_3977 ObjTables xlsx +http://edamontology.org/format_3978 CONTIG contig +http://edamontology.org/format_3979 WEGO wego +http://edamontology.org/format_3980 RPKM rpkm +http://edamontology.org/format_3981 TAR format tar +http://edamontology.org/format_3982 CHAIN chain +http://edamontology.org/format_3983 NET net +http://edamontology.org/format_3984 QMAP qmap +http://edamontology.org/format_3985 gxformat2 ga +http://edamontology.org/format_3986 WMV wmv +http://edamontology.org/format_3987 ZIP format zip +http://edamontology.org/format_3988 LSM lsm +http://edamontology.org/format_3989 GZIP format gz|gzip +http://edamontology.org/format_3990 AVI avi +http://edamontology.org/format_3991 TrackDB trackDb +http://edamontology.org/format_3992 CIGAR format cigar +http://edamontology.org/format_3993 Stereolithography format stl +http://edamontology.org/format_3994 U3D u3d +http://edamontology.org/format_3995 Texture file format tex +http://edamontology.org/format_3996 Python script py +http://edamontology.org/format_3997 MPEG-4 mp4 +http://edamontology.org/format_3998 Perl script pl +http://edamontology.org/format_3999 R script R +http://edamontology.org/format_4000 R markdown Rmd +http://edamontology.org/format_4001 NIFTI format nii +http://edamontology.org/format_4002 pickle pickle +http://edamontology.org/format_4003 NumPy format npy +http://edamontology.org/format_4004 SimTools repertoire file format repz +http://edamontology.org/format_4005 Configuration file format cfg +http://edamontology.org/format_4006 Zstandard format zst +http://edamontology.org/format_4007 MATLAB script m diff --git a/nf_core/assets/get_latest_edam.sh b/nf_core/assets/get_latest_edam.sh index eeb46bdf2b..9f38162881 100644 --- a/nf_core/assets/get_latest_edam.sh +++ b/nf_core/assets/get_latest_edam.sh @@ -1,4 +1,4 @@ # Run the following command to update to the latest EDAM file curl -4 -fsSL https://edamontology.org/EDAM.tsv | \ - awk -F'\t' 'NF>=15 && $15!="" {print $1,$2,$15}' \ + awk -F'\t' -v OFS='\t' 'NF>=15 && $15!="" {print $1,$2,$15}' \ > nf_core/assets/EDAM.tsv diff --git a/tests/modules/test_modules_utils.py b/tests/modules/test_modules_utils.py index aba2eb3f79..3f6751bab9 100644 --- a/tests/modules/test_modules_utils.py +++ b/tests/modules/test_modules_utils.py @@ -86,5 +86,6 @@ def test_filter_modules_by_name_empty_list(self): def test_load_edam(self): """Test edam ontology loading""" edam_formats = nf_core.modules.modules_utils.load_edam() - assert len(edam_formats) == 62 - assert len(edam_formats[1]) == 2 + assert len(edam_formats) == 67 + first_item = next(iter(edam_formats)) + assert len(first_item) == 2 From fd064515bcc3875a8ce2d9748713c47dcc2d1e09 Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 12:21:04 +0200 Subject: [PATCH 07/13] Fix changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 610a35647b..9453c9892f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ - switch changelog bot trigger only on comments ([#4241](https://github.com/nf-core/tools/pull/4241)) - fix indentation in generated api docs ([#4245](https://github.com/nf-core/tools/pull/4245)) +### Linting + - use static edam.csv and fix yaml comment loss ([#4242](https://github.com/nf-core/tools/pull/4242)) ### Modules From 952bbe3d3a95e356d1d1cb374d83edb883ad34ca Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 12:47:04 +0200 Subject: [PATCH 08/13] Remove unecessary --- nf_core/modules/lint/__init__.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/nf_core/modules/lint/__init__.py b/nf_core/modules/lint/__init__.py index 7f01f7f4a2..2f80b9f974 100644 --- a/nf_core/modules/lint/__init__.py +++ b/nf_core/modules/lint/__init__.py @@ -689,16 +689,13 @@ def _add_edam_ontologies(section, edam_formats, desc): def _ensure_string_keys(obj): """Recursively ensure all dict keys are strings (e.g., convert 1.2 -> "1.2")""" + # This first block is needed to keep the comments in the yml if isinstance(obj, ruamel.yaml.comments.CommentedMap): for key in list(obj.keys()): value = obj.pop(key) new_key = str(key) if not isinstance(key, str) else key obj[new_key] = _ensure_string_keys(value) return obj - elif isinstance(obj, ruamel.yaml.comments.CommentedSeq): - for i, item in enumerate(obj): - obj[i] = _ensure_string_keys(item) - return obj elif isinstance(obj, dict): return {str(k) if not isinstance(k, str) else k: _ensure_string_keys(v) for k, v in obj.items()} elif isinstance(obj, list): From c5f2f29804366bae016de5f67747a358e178db97 Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 13:20:17 +0200 Subject: [PATCH 09/13] Use NFCORE_CACHE_DIR --- CHANGELOG.md | 2 +- nf_core/assets/EDAM.tsv | 62 ------------------------------- nf_core/assets/get_latest_edam.sh | 4 -- nf_core/modules/modules_utils.py | 29 +++++++++++---- 4 files changed, 23 insertions(+), 74 deletions(-) delete mode 100644 nf_core/assets/EDAM.tsv delete mode 100644 nf_core/assets/get_latest_edam.sh diff --git a/CHANGELOG.md b/CHANGELOG.md index 9453c9892f..6f50b9a683 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,7 +11,7 @@ ### Linting -- use static edam.csv and fix yaml comment loss ([#4242](https://github.com/nf-core/tools/pull/4242)) +- Store `EDAM.tsv` in `NFCORE_CACHE_DIR` and fix yaml comment loss ([#4242](https://github.com/nf-core/tools/pull/4242)) ### Modules diff --git a/nf_core/assets/EDAM.tsv b/nf_core/assets/EDAM.tsv deleted file mode 100644 index 4fddf177a5..0000000000 --- a/nf_core/assets/EDAM.tsv +++ /dev/null @@ -1,62 +0,0 @@ -Class ID Preferred Label File extension -http://edamontology.org/format_1930 FASTQ fq|fastq -http://edamontology.org/format_2332 XML xml -http://edamontology.org/format_3256 N-Triples nt -http://edamontology.org/format_3257 Notation3 n3 -http://edamontology.org/format_3261 RDF/XML rdf -http://edamontology.org/format_3464 JSON json -http://edamontology.org/format_3475 TSV tsv|tab -http://edamontology.org/format_3556 MHTML mhtml|mht|eml -http://edamontology.org/format_3665 K-mer countgraph oxlicg -http://edamontology.org/format_3682 imzML metadata file imzML -http://edamontology.org/format_3710 WIFF format wiff -http://edamontology.org/format_3746 BIOM format biom -http://edamontology.org/format_3749 JSON-LD jsonld -http://edamontology.org/format_3750 YAML yaml|yml -http://edamontology.org/format_3752 CSV csv -http://edamontology.org/format_3788 SQL sql -http://edamontology.org/format_3789 XQuery xq|xqy|xquery -http://edamontology.org/format_3839 ibd ibd -http://edamontology.org/format_3857 CWL cwl -http://edamontology.org/format_3911 msh msh -http://edamontology.org/format_3913 Loom loom -http://edamontology.org/format_3915 Zarr zarray|zgroup -http://edamontology.org/format_3916 MTX mtx -http://edamontology.org/format_3956 N-Quads nq -http://edamontology.org/format_3969 Vega json -http://edamontology.org/format_3970 Vega-lite json -http://edamontology.org/format_3972 BNGL bngl -http://edamontology.org/format_3973 Docker image format dockerfile -http://edamontology.org/format_3975 GFA 1 gfa -http://edamontology.org/format_3976 GFA 2 gfa -http://edamontology.org/format_3977 ObjTables xlsx -http://edamontology.org/format_3978 CONTIG contig -http://edamontology.org/format_3979 WEGO wego -http://edamontology.org/format_3980 RPKM rpkm -http://edamontology.org/format_3981 TAR format tar -http://edamontology.org/format_3982 CHAIN chain -http://edamontology.org/format_3983 NET net -http://edamontology.org/format_3984 QMAP qmap -http://edamontology.org/format_3985 gxformat2 ga -http://edamontology.org/format_3986 WMV wmv -http://edamontology.org/format_3987 ZIP format zip -http://edamontology.org/format_3988 LSM lsm -http://edamontology.org/format_3989 GZIP format gz|gzip -http://edamontology.org/format_3990 AVI avi -http://edamontology.org/format_3991 TrackDB trackDb -http://edamontology.org/format_3992 CIGAR format cigar -http://edamontology.org/format_3993 Stereolithography format stl -http://edamontology.org/format_3994 U3D u3d -http://edamontology.org/format_3995 Texture file format tex -http://edamontology.org/format_3996 Python script py -http://edamontology.org/format_3997 MPEG-4 mp4 -http://edamontology.org/format_3998 Perl script pl -http://edamontology.org/format_3999 R script R -http://edamontology.org/format_4000 R markdown Rmd -http://edamontology.org/format_4001 NIFTI format nii -http://edamontology.org/format_4002 pickle pickle -http://edamontology.org/format_4003 NumPy format npy -http://edamontology.org/format_4004 SimTools repertoire file format repz -http://edamontology.org/format_4005 Configuration file format cfg -http://edamontology.org/format_4006 Zstandard format zst -http://edamontology.org/format_4007 MATLAB script m diff --git a/nf_core/assets/get_latest_edam.sh b/nf_core/assets/get_latest_edam.sh deleted file mode 100644 index 9f38162881..0000000000 --- a/nf_core/assets/get_latest_edam.sh +++ /dev/null @@ -1,4 +0,0 @@ -# Run the following command to update to the latest EDAM file -curl -4 -fsSL https://edamontology.org/EDAM.tsv | \ - awk -F'\t' -v OFS='\t' 'NF>=15 && $15!="" {print $1,$2,$15}' \ - > nf_core/assets/EDAM.tsv diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index fe5daf36a3..3e33351243 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -2,6 +2,10 @@ from pathlib import Path from urllib.parse import urlparse +import requests + +from nf_core.utils import NFCORE_CACHE_DIR + from ..components.nfcore_component import NFCoreComponent log = logging.getLogger(__name__) @@ -97,13 +101,24 @@ def get_installed_modules(directory: Path, repo_type="modules") -> tuple[list[st def load_edam(): """Load the EDAM ontology from the nf-core repository""" edam_formats = {} - local_path = Path(__file__).parent.parent / "assets" / "EDAM.tsv" - try: - with local_path.open("rb") as f: - data_bytes = f.read() - except (FileNotFoundError, OSError) as e: - log.warning(f"Failed to load EDAM ontology: {e}") - return {} + cache_path = Path(NFCORE_CACHE_DIR) / "EDAM.tsv" + if not cache_path.exists(): + log.debug("EDAM.tsv file not found in NFCORE_CACHE_DIR") + try: + response = requests.get("https://edamontology.org/EDAM.tsv", timeout=15) + data_bytes = response.content + with open(cache_path, "wb") as fh: + fh.write(data_bytes) + except requests.exceptions.RequestException: + return edam_formats + else: + log.debug("EDAM.tsv file found in NFCORE_CACHE_DIR") + try: + with cache_path.open("rb") as f: + data_bytes = f.read() + except (FileNotFoundError, OSError) as e: + log.warning(f"Failed to load EDAM ontology: {e}") + return edam_formats for line in data_bytes.splitlines(): fields = line.decode("utf-8").split("\t") if fields[0].split("/")[-1].startswith("format") and fields[2]: # We choose an already provided extension From f3518dd5468754ee54f4b6c493403616c6bca3ed Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Louis=20Le=20N=C3=A9zet?= <58640615+LouisLeNezet@users.noreply.github.com> Date: Wed, 29 Apr 2026 13:47:40 +0200 Subject: [PATCH 10/13] Update nf_core/modules/modules_utils.py MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Matthias Hörtenhuber --- nf_core/modules/modules_utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index 3e33351243..7dd5a0e042 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -116,7 +116,7 @@ def load_edam(): try: with cache_path.open("rb") as f: data_bytes = f.read() - except (FileNotFoundError, OSError) as e: + except (OSError) as e: log.warning(f"Failed to load EDAM ontology: {e}") return edam_formats for line in data_bytes.splitlines(): From 27e470602a6c58f1985e3cfa389b7539d5dce28c Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 14:20:16 +0200 Subject: [PATCH 11/13] Use TTL for EDAM.tsv --- nf_core/modules/modules_utils.py | 33 +++++++++++++++++++------ tests/modules/test_modules_utils.py | 38 ++++++++++++++++++++++++++--- 2 files changed, 59 insertions(+), 12 deletions(-) diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index 7dd5a0e042..14ea23e5e8 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -1,4 +1,5 @@ import logging +import time from pathlib import Path from urllib.parse import urlparse @@ -10,6 +11,9 @@ log = logging.getLogger(__name__) +EDAM_TSV_URL = "https://edamontology.org/EDAM.tsv" +EDAM_CACHE_TTL = 7 * 24 * 60 * 60 # one week + class ModuleExceptionError(Exception): """Exception raised when there was an error with module commands""" @@ -98,27 +102,40 @@ def get_installed_modules(directory: Path, repo_type="modules") -> tuple[list[st return local_modules, nfcore_modules +def cache_is_expired(path: Path) -> bool: + """Return True if the cache file is older than the configured TTL.""" + age = time.time() - path.stat().st_mtime + return age > EDAM_CACHE_TTL + + def load_edam(): """Load the EDAM ontology from the nf-core repository""" edam_formats = {} cache_path = Path(NFCORE_CACHE_DIR) / "EDAM.tsv" + + # Remove stale cache file + if cache_path.exists() and cache_is_expired(cache_path): + log.debug("Cached EDAM ontology expired; removing old cache file") + cache_path.unlink(missing_ok=True) + if not cache_path.exists(): - log.debug("EDAM.tsv file not found in NFCORE_CACHE_DIR") + log.debug("EDAM.tsv file not found in NFCORE_CACHE_DIR; downloading") try: - response = requests.get("https://edamontology.org/EDAM.tsv", timeout=15) + response = requests.get(EDAM_TSV_URL, timeout=15) + response.raise_for_status() data_bytes = response.content - with open(cache_path, "wb") as fh: - fh.write(data_bytes) - except requests.exceptions.RequestException: + cache_path.write_bytes(data_bytes) + except requests.exceptions.RequestException as e: + log.warning(f"Failed to download EDAM ontology: {e}") return edam_formats else: - log.debug("EDAM.tsv file found in NFCORE_CACHE_DIR") + log.debug("Using EDAM.tsv file found in NFCORE_CACHE_DIR") try: - with cache_path.open("rb") as f: - data_bytes = f.read() + data_bytes = cache_path.read_bytes() except (OSError) as e: log.warning(f"Failed to load EDAM ontology: {e}") return edam_formats + for line in data_bytes.splitlines(): fields = line.decode("utf-8").split("\t") if fields[0].split("/")[-1].startswith("format") and fields[2]: # We choose an already provided extension diff --git a/tests/modules/test_modules_utils.py b/tests/modules/test_modules_utils.py index 3f6751bab9..889c0ee2d4 100644 --- a/tests/modules/test_modules_utils.py +++ b/tests/modules/test_modules_utils.py @@ -1,3 +1,6 @@ +from pathlib import Path +from unittest.mock import patch + import nf_core.modules.modules_utils from ..test_modules import TestModules @@ -83,9 +86,36 @@ def test_filter_modules_by_name_empty_list(self): filtered = nf_core.modules.modules_utils.filter_modules_by_name(modules, "fastqc") assert len(filtered) == 0 + @patch("nf_core.modules.modules_utils.NFCORE_CACHE_DIR", new="test_cache") def test_load_edam(self): - """Test edam ontology loading""" + """Test EDAM ontology loading""" + + cache_dir = Path("test_cache") + cache_path = cache_dir / "EDAM.tsv" + + # Ensure clean state + if cache_dir.exists(): + for f in cache_dir.iterdir(): + f.unlink() + cache_dir.rmdir() + + cache_dir.mkdir() + + # Cache should not exist before loading + assert not cache_path.exists() + edam_formats = nf_core.modules.modules_utils.load_edam() - assert len(edam_formats) == 67 - first_item = next(iter(edam_formats)) - assert len(first_item) == 2 + + # Cache file should now exist + assert cache_path.exists() + + first_key, first_value = next(iter(edam_formats.items())) + + assert isinstance(first_key, str) + assert isinstance(first_value, tuple) + assert len(first_value) == 2 + + # Cleanup (important since we're not using tmp_path) + for f in cache_dir.iterdir(): + f.unlink() + cache_dir.rmdir() From c602f0c6f3b252253b1a23ed0338183f32590eaf Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 14:22:35 +0200 Subject: [PATCH 12/13] Fix lint --- nf_core/modules/modules_utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index 14ea23e5e8..faedf85a7e 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -132,7 +132,7 @@ def load_edam(): log.debug("Using EDAM.tsv file found in NFCORE_CACHE_DIR") try: data_bytes = cache_path.read_bytes() - except (OSError) as e: + except OSError as e: log.warning(f"Failed to load EDAM ontology: {e}") return edam_formats From 303cd484d2091711019323e88672d0846b2cbbdc Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Wed, 29 Apr 2026 14:44:57 +0200 Subject: [PATCH 13/13] Fix edam columns --- nf_core/modules/modules_utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nf_core/modules/modules_utils.py b/nf_core/modules/modules_utils.py index faedf85a7e..21496fdef3 100644 --- a/nf_core/modules/modules_utils.py +++ b/nf_core/modules/modules_utils.py @@ -138,8 +138,8 @@ def load_edam(): for line in data_bytes.splitlines(): fields = line.decode("utf-8").split("\t") - if fields[0].split("/")[-1].startswith("format") and fields[2]: # We choose an already provided extension - extensions = fields[2].split("|") + if fields[0].split("/")[-1].startswith("format") and fields[14]: # We choose an already provided extension + extensions = fields[14].split("|") for extension in extensions: if extension not in edam_formats: edam_formats[extension] = (fields[0], fields[1]) # URL, name