Description of feature
Subworkflow for QC:
quality_control/main.nf
Sub-subworkflows:
ambient_correction/main.nf
h5ad_removebackground_barcodes_cellbender_anndata/main.nf
The common modules between 2 subworkflows:
include { CELLBENDER_REMOVEBACKGROUND } from '../../../modules/nf-core/cellbender/removebackground'
If the user select the cellbender on the ambient_correction that may cause duplication on re-running cellbender using remove-background. I think it should be removed the method cellbender on ambient_correction
Description of feature
Subworkflow for QC:
quality_control/main.nf
Sub-subworkflows:
ambient_correction/main.nf
h5ad_removebackground_barcodes_cellbender_anndata/main.nf
The common modules between 2 subworkflows:
include { CELLBENDER_REMOVEBACKGROUND } from '../../../modules/nf-core/cellbender/removebackground'If the user select the cellbender on the
ambient_correctionthat may cause duplication on re-running cellbender usingremove-background. I think it should be removed the methodcellbenderon ambient_correction