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InterOp QC for Illumina runs #145

@matthdsm

Description

@matthdsm

Description of feature

Use the InterOp utilities to check run and demux performance before running the rest of the pipeline

TODO:

  • Write InterOp modules
  • Define criteria for run pass/fail
  • Define criteria for sample pass/fail
  • Add workflow logic to fail early but gracefully when QC doesn't pass

xref: https://github.com/Molmed/checkQC

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