Commit aa030f1
committed
chore: release '2026-04-14--11-55-23Z'
Updated datasets:
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
- Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
- Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)
- Influenza B (all) HA (nextstrain/flu/b/ha/KX058884)
- Influenza B (all) NA (nextstrain/flu/b/na/CY073894)
- Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
- Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)
- Influenza B Yamagata HA (nextstrain/flu/yam/ha/JN993010)
- RSV-A (nextstrain/rsv/a/EPI_ISL_412866)
- RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)
- Mpox virus (All clades) (nextstrain/mpox/all-clades)
- Mpox virus (Clade I) (nextstrain/mpox/clade-i)
- Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)
- Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)
- Ebola virus (nextstrain/orthoebolavirus/ebov)
- Sudan virus (nextstrain/orthoebolavirus/sudv)
- Measles morbillivirus -- complete genome (nextstrain/measles/genome/WHO-2012)
- Dengue virus All serotypes (nextstrain/dengue/all)
- Human Metapneumovirus (nextstrain/hmpv/all-clades/NC_039199)
- Varicella-Zoster Virus (VZV) (nextstrain/herpes/vzv/NC_001348)
- Rubella virus E1 region (nextstrain/rubella/E1)
- Mumps MuV Genotypes (SH gene 315nt region) (nextstrain/mumps/sh)
- Mumps MuV Genotypes (Full genome) (nextstrain/mumps/genome)
- Rubella (nextstrain/rubella/genome)
- Influenza A H3N2 PB2 (nextstrain/flu/h3n2/pb2)
- Influenza A H3N2 PB1 (nextstrain/flu/h3n2/pb1)
- Influenza A H3N2 PA (nextstrain/flu/h3n2/pa)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
- Influenza A H3N2 NP (nextstrain/flu/h3n2/np)
- Influenza A H3N2 MP (nextstrain/flu/h3n2/mp)
- Influenza A H3N2 NS (nextstrain/flu/h3n2/ns)
- Influenza A H1N1pdm PB2 (nextstrain/flu/h1n1pdm/pb2)
- Influenza A H1N1pdm PB1 (nextstrain/flu/h1n1pdm/pb1)
- Influenza A H1N1pdm PA (nextstrain/flu/h1n1pdm/pa)
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
- Influenza A H1N1pdm MP (nextstrain/flu/h1n1pdm/mp)
- Influenza A H1N1pdm NP (nextstrain/flu/h1n1pdm/np)
- Influenza A H1N1pdm NS (nextstrain/flu/h1n1pdm/ns)
- West Nile Virus (nextstrain/wnv/all-lineages)
- Enterovirus D68 (enpen/enterovirus/ev-d68)
- PRRSV-1 ORF5 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)
- PRRSV-2 ORF5 Lineages, Yim-im & Zhang 2023 Microbiol Spectr (community/isuvdl/mazeller/prrsv2/orf5/yimim2023)
- HIV-1 (HXB2) (community/neherlab/hiv-1/hxb2)
- H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)
- H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)
- H5Nx clade 2.3.2.1 (community/moncla-lab/iav-h5/ha/2.3.2.1)
- DENV-1 (community/v-gen-lab/dengue/denv1)
- DENV-2 (community/v-gen-lab/dengue/denv2)
- DENV-3 (community/v-gen-lab/dengue/denv3)
- DENV-4 (community/v-gen-lab/dengue/denv4)
- chikV (community/v-gen-lab/chikV/genotypes)
- Zika virus (community/itps/zikav)1 parent 6a5d800 commit aa030f1
483 files changed
Lines changed: 526 additions & 367 deletions
File tree
- data_output
- community
- isuvdl/mazeller
- prrsv1/orf5/yimim2025/2026-04-14--11-55-23Z
- prrsv2/orf5/yimim2023/2026-04-14--11-55-23Z
- itps/zikav/2026-04-14--11-55-23Z
- moncla-lab/iav-h5/ha
- 2.3.2.1/2026-04-14--11-55-23Z
- 2.3.4.4/2026-04-14--11-55-23Z
- all-clades/2026-04-14--11-55-23Z
- neherlab/hiv-1/hxb2/2026-04-14--11-55-23Z
- v-gen-lab
- chikV/genotypes/2026-04-14--11-55-23Z
- dengue
- denv1/2026-04-14--11-55-23Z
- denv2/2026-04-14--11-55-23Z
- denv3/2026-04-14--11-55-23Z
- denv4/2026-04-14--11-55-23Z
- enpen/enterovirus/ev-d68/2026-04-14--11-55-23Z
- nextstrain
- dengue/all/2026-04-14--11-55-23Z
- flu
- b
- ha/KX058884/2026-04-14--11-55-23Z
- na/CY073894/2026-04-14--11-55-23Z
- h1n1pdm
- ha
- CY121680/2026-04-14--11-55-23Z
- MW626062/2026-04-14--11-55-23Z
- mp/2026-04-14--11-55-23Z
- na/MW626056/2026-04-14--11-55-23Z
- np/2026-04-14--11-55-23Z
- ns/2026-04-14--11-55-23Z
- pa/2026-04-14--11-55-23Z
- pb1/2026-04-14--11-55-23Z
- pb2
- 2026-04-14--11-55-23Z
- unreleased
- h3n2
- ha
- CY163680/2026-04-14--11-55-23Z
- EPI1857216/2026-04-14--11-55-23Z
- mp
- 2026-04-14--11-55-23Z
- unreleased
- na/EPI1857215/2026-04-14--11-55-23Z
- np
- 2026-04-14--11-55-23Z
- unreleased
- ns
- 2026-04-14--11-55-23Z
- unreleased
- pa/2026-04-14--11-55-23Z
- pb1
- 2026-04-14--11-55-23Z
- unreleased
- pb2
- 2026-04-14--11-55-23Z
- unreleased
- vic
- ha/KX058884/2026-04-14--11-55-23Z
- na/CY073894/2026-04-14--11-55-23Z
- yam/ha/JN993010/2026-04-14--11-55-23Z
- herpes/vzv/NC_001348/2026-04-14--11-55-23Z
- hmpv/all-clades/NC_039199/2026-04-14--11-55-23Z
- measles/genome/WHO-2012/2026-04-14--11-55-23Z
- mpox
- all-clades/2026-04-14--11-55-23Z
- clade-iib/2026-04-14--11-55-23Z
- clade-i/2026-04-14--11-55-23Z
- lineage-b.1/2026-04-14--11-55-23Z
- mumps
- genome/2026-04-14--11-55-23Z
- sh/2026-04-14--11-55-23Z
- orthoebolavirus
- ebov/2026-04-14--11-55-23Z
- sudv/2026-04-14--11-55-23Z
- rsv
- a/EPI_ISL_412866/2026-04-14--11-55-23Z
- b/EPI_ISL_1653999/2026-04-14--11-55-23Z
- rubella
- E1/2026-04-14--11-55-23Z
- genome/2026-04-14--11-55-23Z
- wnv/all-lineages/2026-04-14--11-55-23Z
- data
- community
- isuvdl/mazeller
- prrsv1/orf5/yimim2025
- prrsv2/orf5/yimim2023
- itps/zikav
- moncla-lab/iav-h5/ha
- 2.3.2.1
- 2.3.4.4
- all-clades
- neherlab/hiv-1/hxb2
- v-gen-lab
- chikV/genotypes
- dengue
- denv1
- denv2
- denv3
- denv4
- enpen/enterovirus/ev-d68
- nextstrain
- dengue/all
- flu
- b
- ha/KX058884
- na/CY073894
- h1n1pdm
- ha
- CY121680
- MW626062
- mp
- na/MW626056
- np
- ns
- pa
- pb1
- pb2
- h3n2
- ha
- CY163680
- EPI1857216
- mp
- na/EPI1857215
- np
- ns
- pa
- pb1
- pb2
- vic
- ha/KX058884
- na/CY073894
- yam/ha/JN993010
- herpes/vzv/NC_001348
- hmpv/all-clades/NC_039199
- measles/genome/WHO-2012
- mpox
- all-clades
- clade-iib
- clade-i
- lineage-b.1
- mumps
- genome
- sh
- orthoebolavirus
- ebov
- sudv
- rsv
- a/EPI_ISL_412866
- b/EPI_ISL_1653999
- rubella
- E1
- genome
- wnv/all-lineages
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