LSA.txt

===========================
           USAGE  
===========================
ipython:

from nested.lsa import *
from nested.optimize_utils import OptimizationHistory

history = OptimizationHistory(file_path='example.hdf5')
sa = ParameterSensitivity(history)

# produces a plot of GINI importances
# produces a plot of absolute R coefficients resulting from local sensitivity analysis
sa_plot, sa_perturb = sa.run_analysis()


jupyter notebook:
(see https://stackoverflow.com/a/55848505 for setting up the notebook if needed)

import ipympl
%matplotlib widget
from nested.lsa import *
from nested.optimize_utils import OptimizationHistory

pop = OptimizationHistory(file_path='example.hdf5')
sa = ParameterSensitivity(pop, jupyter=True)
sa.
sa.plot_final_colormap()