Tumor specific Sublonal Grouping #133
Description
Hi there i had a small question regarding the functionality of the tool.
The original predictions define the Diploid/aneuoploid cells, and later we can subdivide the aneuploid cells.
What if we already have annotated the Tumor cells and need to directly estimate the subclonal groups?
Will copyCat define some other groups "Diploid" even though they are subclusters?
Should i input the normal cells anyway and then divide the aneuploid predicted ones?
Thank you a lot in advance:)