TreeTools/NAMESPACE at master · nanoquanta/TreeTools · GitHub

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# Generated by roxygen2: do not edit by hand

export(AddTip)
export(AddTipEverywhere)
export(AllAncestors)
export(AllDescendantEdges)
export(AncestorEdge)
export(ApeTime)
export(BalancedTree)
export(C_node_depth)
export(CharacterInformation)
export(CladeSizes)
export(Cladewise)
export(CollapseEdge)
export(CollapseNode)
export(ConsensusWithout)
export(DescendantEdges)
export(DoubleFactorial)
export(DropSingleSplits)
export(EdgeAncestry)
export(EdgeDistances)
export(EnforceOutgroup)
export(ExtractTaxa)
export(ForestSplits)
export(IC1Spr)
export(ListToMatrix)
export(LnRooted)
export(LnRooted.int)
export(LnUnrooted)
export(LnUnrooted.int)
export(LnUnrootedMult)
export(LnUnrootedSplits)
export(LogDoubleFactorial)
export(LogDoubleFactorial.int)
export(LogTreesMatchingSplit)
export(MRCA)
export(MarkMissing)
export(MatrixToList)
export(MatrixToPhyDat)
export(MultiSplitInformation)
export(N1Spr)
export(NJTree)
export(NPartitions)
export(NRooted)
export(NSplits)
export(NUnrooted)
export(NUnrootedMult)
export(NUnrootedSplits)
export(NewickTree)
export(NeworderPhylo)
export(NeworderPruningwise)
export(NexusTokens)
export(NonDuplicateRoot)
export(OrderEdgesNumberNodes)
export(PectinateTree)
export(PhyDat)
export(PhyDatToMatrix)
export(PhyDatToString)
export(PhyToString)
export(PhydatToString)
export(Postorder)
export(PostorderEdges)
export(Preorder)
export(Pruningwise)
export(RandomTree)
export(ReadAsPhyDat)
export(ReadCharacters)
export(ReadTntAsPhyDat)
export(ReadTntCharacters)
export(ReadTntTree)
export(Renumber)
export(RenumberEdges)
export(RenumberTips)
export(RenumberTree)
export(RightmostCharacter)
export(RootTree)
export(SampleOne)
export(SingleTaxonTree)
export(SortTree)
export(SplitFrequency)
export(SplitInformation)
export(SplitNumber)
export(SplitsRepeated)
export(StringToPhyDat)
export(Subtree)
export(SupportColor)
export(SupportColour)
export(TNTText2Tree)
export(Tree2Bipartitions)
export(Tree2Splits)
export(TreeIsRooted)
export(TreeSplits)
export(TreesMatchingSplit)
export(UniqueSplits)
export(UnrootedTreesMatchingSplit)
export(doubleFactorials)
export(logDoubleFactorials)
importFrom(ape,bind.tree)
importFrom(ape,collapse.singles)
importFrom(ape,consensus)
importFrom(ape,drop.tip)
importFrom(ape,nj)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,root)
importFrom(ape,rtree)
importFrom(ape,write.tree)
importFrom(colorspace,diverge_hcl)
importFrom(graphics,legend)
importFrom(phangorn,Ancestors)
importFrom(phangorn,Descendants)
importFrom(phangorn,allDescendants)
importFrom(phangorn,dist.hamming)
importFrom(phangorn,phyDat)
useDynLib(TreeTools, .registration = TRUE)