AgentCommander/mkdocs.yml at main · mx-Liu123/AgentCommander · GitHub

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site_name: AgentCommander
site_description: Automating the loop of scientific discovery with AI Agents.
site_url: https://mx-Liu123.github.io/AgentCommander/
site_author: AgentCommander Team
repo_url: https://github.com/mx-Liu123/AgentCommander
edit_uri: edit/main/docs/

theme:
  name: material
  palette:
    - scheme: default
      primary: indigo
      accent: deep purple
      toggle:
        icon: material/brightness-7
        name: Switch to dark mode
    - scheme: slate
      primary: indigo
      accent: deep purple
      toggle:
        icon: material/brightness-4
        name: Switch to light mode
  features:
    - navigation.tabs
    - navigation.sections
    - navigation.expand
    - content.code.copy

markdown_extensions:
  - admonition
  - pymdownx.details
  - pymdownx.superfences
  - pymdownx.highlight:
      anchor_linenums: true
  - pymdownx.tabbed:
      alternate_style: true
  - attr_list

nav:
  - Home: index.md
  - Getting Started:
    - Installation & Launch: getting-started.md
    - Project Setup:
      - Auto-Setup Wizard: protocols/auto-setup.md
      - BYOC Protocol: protocols/byoc-protocol.md
    - Examples & Guides:
      - Diabetes Example: guides/diabetes-example.md
      - HPC/PBS Cluster: guides/hpc-cluster.md
  - Agent Capability:
    - Overview: automated-engine/index.md
    - Evolutionary Strategy: automated-engine/evolution-strategy.md
    - Inner Loop Logic: automated-engine/inner-loop.md
    - Safety & Sandbox: automated-engine/safety-sandbox.md
  - Human Supervision:
    - Workflow Design: human-supervision/workflow-design.md
    - Evolutionary Tree: human-supervision/evolution-tree.md
    - File Management: human-supervision/file-management.md
    - White-box Debugging: human-supervision/white-box-debugging.md
    - Visual Feedback: human-supervision/visual-feedback.md
  - Reference & Tips:
    - Tips & Best Practices: reference/tips.md
    - CLI Guide (Gemini/Qwen): reference/cli-guide.md
    - Configuration: reference/configuration.md
    - Troubleshooting: reference/troubleshooting.md