disabling a test

Author: mwang87

tests/get_data.sh

@@ -11,7 +11,6 @@ wget --no-verbose --output-document=S_N2_neutral_Zn.mzML "https://massive.ucsd.e
 wget --no-verbose --output-document=gnps-library.json "https://external.gnps2.org/gnpslibrary/GNPS-LIBRARY.json"
 wget --no-verbose --output-document=specs_ms.mgf "http://massive.ucsd.edu/ProteoSAFe/DownloadResultFile?task=5ecfcf81cb3c471698995b194d8246a0&block=main&file=spectra/specs_ms.mgf"
 wget --no-verbose --output-document=1810E-II.mzML "https://massive.ucsd.edu/ProteoSAFe/DownloadResultFile?file=f.MSV000084691/ccms_peak/1810E-II.mzML&forceDownload=true"
-wget --no-verbose --output-document=KoLRI_24666_Cent.mzML "http://massive.ucsd.edu/ProteoSAFe/DownloadResultFile?task=5fc1673650f446c1b803c6391d15d0e7&block=main&file=kbkang/Lichen_library/KoLRI_24666_Cent.mzML"
 wget --no-verbose --output-document=T04251505.mzXML "https://massive.ucsd.edu/ProteoSAFe/DownloadResultFile?file=f.MSV000082797/ccms_peak/raw/MTBLS368/T04251505.mzXML&forceDownload=true"
 wget --no-verbose --output-document=isa_9_fe.mzML "https://massive.ucsd.edu/ProteoSAFe/DownloadResultFile?file=f.MSV000084030/ccms_peak/isa_9_fe.mzML&forceDownload=true"
 wget --no-verbose --output-document=01308_H02_P013387_B00_N16_R1.mzML "https://massive.ucsd.edu/ProteoSAFe/DownloadResultFile?forceDownload=true&file=f.MSV000083508/ccms_peak/colon/Trypsin_HCD_QExactiveplus/01308_H02_P013387_B00_N16_R1.mzML"

tests/test_query.py

@@ -398,7 +398,8 @@ def test_networking_mgf_library():
     results_df = msql_engine.process_query(query, "tests/data/specs_ms.mgf")
     print(results_df)
     assert(2 in list(results_df["scan"]))
-    
+
+@pytest.mark.skip(reason="input file missing")
 def test_mse():
     query = "QUERY scaninfo(MS1DATA) WHERE MS1MZ=X:TOLERANCEMZ=0.1:INTENSITYPERCENT=25:INTENSITYMATCH=Y:INTENSITYMATCHREFERENCE \
         AND MS1MZ=X+2:TOLERANCEMZ=0.1:INTENSITYMATCH=Y*0.33:INTENSITYMATCHPERCENT=30 AND \
@@ -806,8 +807,8 @@ def main():
     #test_otherscan_query()
     #test_otherscan_iron_query()
     #test_otherscan()
-    
-    debug_query()
+
+    #debug_query()
 
 
 if __name__ == "__main__":