test-workflow.yml

# # This workflow will install Python dependencies, run tests and lint with a single version of Python
# # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

# name: NF Workflow Testing

# on:
#   push:
#     branches: [ master ]
#   pull_request:
#     branches: [ master ]

# jobs:
#   nextflow-test:

#     runs-on: ubuntu-latest

#     steps:
#     - uses: actions/checkout@v2
#     #- name: Set up Python 3.9
#     #  uses: actions/setup-python@v2
#     #  with:
#     #    python-version: 3.9
#     - name: Install dependencies
#       run: |
#         #python -m pip install --upgrade pip
#         #pip install flake8 pytest
#         #if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
#         wget -qO- get.nextflow.io | bash
#         sudo mv nextflow /usr/local/bin/
#     - name: Download Data
#       run: |
#         cd tests && sh ./get_data.sh && cd ..
#     - name: Workflow Testing
#       run: |
#         cd workflow
#         make run_test
#         make run_test_no_extract