module.implicit.parser
biolockj.module.implicit.parser modules parse classifier output to generate OTU tables.
Implicit modules are ignored if included in the Config file unless project.allowImplicitModules=Y.
There are 2 sub-packages of parser modules:
- module.implicit.parser.r16s modules parse module.classifier.r16s reports.
- module.implicit.parser.wgs modules parse module.classifier.wgs reports.
| Module | Config | Description |
|---|---|---|
| ParserModuleImpl |
report.logBase report.minOtuCount report.minOtuThreshold report.numHits report.taxonomyLevels |
Abstract implementation of ParserModule that the other modules extend to inherit standard functionality. Abstract modules cannot be added to a pipeline, but the r16s & WGS sub-packages contain modules that inherit standard parser functionality from this class. |
BioLockJ: data-wrangling done right.