replace remote URLs

Author: ms609

vignettes/Using-TreeDist.Rmd

@@ -3,7 +3,7 @@ title: "Calculate tree similarity with 'TreeDist'"
 author: "[Martin R. Smith](https://smithlabdurham.github.io/)"
 output: rmarkdown::html_vignette
 bibliography: ../inst/REFERENCES.bib
-csl: https://raw.githubusercontent.com/citation-style-language/styles/master/apa-old-doi-prefix.csl
+csl: ../inst/apa-old-doi-prefix.csl
 vignette: >
   %\VignetteIndexEntry{Calculate tree similarity with 'TreeDist'}
   %\VignetteEngine{knitr::rmarkdown}

vignettes/compare-treesets.Rmd

@@ -6,7 +6,7 @@ output:
     fig_width: 6
     fig_height: 4
 bibliography: ../inst/REFERENCES.bib
-csl: https://raw.githubusercontent.com/citation-style-language/styles/master/apa-old-doi-prefix.csl
+csl: ../inst/apa-old-doi-prefix.csl
 vignette: >
   %\VignetteIndexEntry{Comparing sets of trees from different analyses}
   %\VignetteEngine{knitr::rmarkdown}

vignettes/landscapes.Rmd

@@ -6,7 +6,7 @@ output:
     fig_width: 6
     fig_height: 4
 bibliography: ../inst/REFERENCES.bib
-csl: https://raw.githubusercontent.com/citation-style-language/styles/master/apa-old-doi-prefix.csl
+csl: ../inst/apa-old-doi-prefix.csl
 vignette: >
   %\VignetteIndexEntry{Analysing landscapes of phylogenetic trees}
   %\VignetteEngine{knitr::rmarkdown}

vignettes/treespace.Rmd

@@ -6,7 +6,7 @@ output:
     fig_width: 6
     fig_height: 4
 bibliography: ../inst/REFERENCES.bib
-csl: https://raw.githubusercontent.com/citation-style-language/styles/master/apa-old-doi-prefix.csl
+csl: ../inst/apa-old-doi-prefix.csl
 vignette: >
   %\VignetteIndexEntry{Tree space analysis}
   %\VignetteEngine{knitr::rmarkdown}