setup.py

import os.path
import sys
from setuptools import find_packages
from distutils.core import setup

if sys.version_info[:2] < (3, 8):
    sys.stderr.write("Error: at least Python 3.8 or later is required.\n")
    sys.exit(1)

here = os.path.abspath(os.path.dirname(__file__))
exec(open(os.path.join(here, "qapa/version.py")).read())

setup(
    name="qapa",
    version=__version__,  # noqa: F821
    description="RNA-seq Quantification of Alternative Polyadenylation (QAPA)",
    url="http://github.com/morrislab/qapa",
    author="Kevin Ha",
    author_email="k.ha@mail.utoronto.ca",
    license="GPLv3",
    packages=find_packages(),
    scripts=["scripts/create_merged_data.R", "scripts/compute_pau.R"],
    install_requires=[
        "setuptools",
        "pandas >= 2.0.2, <3.0",
        "numpy >= 1.10.0, <2.0",
        "biopython >= 1.76",
        "pybedtools >= 0.7.9",
    ],
    entry_points={"console_scripts": ["qapa = qapa.qapa:main"]},
    python_requires="~=3.8",
    classifiers=[
        "Development Status :: 4 - Beta",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "Programming Language :: Python",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
    ],
    zip_safe=False,
)