dlptools/NAMESPACE at dev · molonc/dlptools · GitHub

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# Generated by roxygen2: do not edit by hand

export("%>%")
export(ASCN_COLORS)
export(ASCN_PHASE_COLORS)
export(BAF_COLORS)
export(BASE_PLOT_THEME)
export(CNV_COLOURS)
export(DEFAULT_CONTINUOUS_COLOR_RANGE)
export(GEN_PLOT_COLS)
export(RAW_COPY_COLORS)
export(STATE_COLORS)
export(add_centromere_locations)
export(add_missing_bins_for_cells)
export(add_telomere_positions)
export(add_tip_ancestors_to_df)
export(build_aggo_tree)
export(cell_states_to_strings)
export(characterize_foreground_total_state_changes)
export(check_the_vibe)
export(compute_tip_sibling_distances)
export(convert_long_reads_to_wide)
export(count_default_process_feats)
export(count_oscillations)
export(create_chrom_arm_intervals)
export(create_chrom_window_intervals)
export(create_expected_bins)
export(cust_mode)
export(expand_length_to_bins)
export(extract_bp_per_arm)
export(extract_bp_per_window)
export(extract_breakpoints)
export(extract_changepoint)
export(extract_cn)
export(extract_oscillations)
export(extract_ploidy_cn_feature)
export(extract_segment_position_feature)
export(extract_segment_sizes)
export(extract_sigminer_wang_features)
export(extract_wu_features)
export(factor_column_mixedsort)
export(fetch_heatmap_color_palette)
export(fill_state_from_neighbours)
export(find_nearest_neighbours)
export(find_outlier_cells)
export(format_sitka_tree)
export(format_states_for_hm)
export(get_clone_id_label_positions)
export(get_dist_to_sibs)
export(get_tip_parents)
export(get_tips_that_avoid_redundant_comps)
export(import_clones)
export(import_telos_file)
export(import_tree)
export(library_from_cell)
export(load_chrom_info_file)
export(load_ucsc_centromeres)
export(make_cell_focused_matrix)
export(make_cellid_matrix)
export(make_clone_palette)
export(map_states_to_letters)
export(mark_bins_overlapping_centromeres)
export(mark_cn_relative_to_ploidy)
export(mark_mask_regions)
export(mark_segs_chromosome_span)
export(medicc_profiles_to_foreground)
export(mode_ploidy)
export(output_hm_image)
export(pairwise_bin_difference)
export(plot_bg_state_highlight)
export(plot_cell_cn_profile)
export(plot_dlp_chip)
export(plot_fg_state_highlight)
export(plot_gc)
export(plot_heatmap_of_tip_changes)
export(plot_nnd_outlier_cells)
export(plot_read_bins_basic)
export(plot_state_hm)
export(pull_chr_from_col_name)
export(pull_info_from_cell_id)
export(read_medicc_profiles)
export(read_medicc_tree)
export(reads_to_segs)
export(rle_states)
export(sample_from_cell)
export(segs_to_reads)
export(sort_df_by_cell_order)
export(weighted_ploidy)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)