Merge remote-tracking branch 'upstream/main' into credit/21555238220

* upstream/main:
  Axial to planar gradiometer transformation (#13196)
  MAINT: Work around pandas deprecation (#13632)
  FIX: Handle empty landmarkLabels in read_raw_snirf (#13628)
  Implement the MEF3 support (#13610)
  BUG: Fix bug with somato dataset paths (#13630)
  DOC: Move mne-kit-gui (#13629)
  fix team name for inactivity tool [ci skip] (#13626)
  MAINT: Update dependency specifiers (#13625)

Author: larsoner

.github/workflows/spec_zero.yml

@@ -67,6 +67,6 @@ jobs:
           git add doc/changes/dev/dependency.rst  # one new file, others changed
           git commit -am "mne[bot]: Update dependency specifiers"
           git push origin spec_zero
-          PR_NUM=$(gh pr create --base main --head spec_zero --title "MAINT: Update dependency specifiers" --body "Created by spec_zero [GitHub action](https://github.com/mne-tools/mne-python/actions/runs/${{ github.run_id }}). <br> <br> *It is very likely that `tools/environment_old.yml` needs to be updated.* <br> <br> *Adjustments may need to be made to shims in \`mne/fixes.py\` and elswhere in this or another PR. \`git grep TODO VERSION\` is a good starting point for finding potential updates.*")
+          PR_NUM=$(gh pr create --base main --head spec_zero --title "MAINT: Update dependency specifiers" --body "Created by spec_zero [GitHub action](https://github.com/mne-tools/mne-python/actions/runs/${{ github.run_id }}). <br> <br> *It is very likely that \`tools/environment_old.yml\` needs to be updated.* <br> <br> *Adjustments may need to be made to shims in \`mne/fixes.py\` and elswhere in this or another PR. \`git grep TODO VERSION\` is a good starting point for finding potential updates.*")
           echo "Opened https://github.com/mne-tools/mne-python/pull/${PR_NUM}" >> $GITHUB_STEP_SUMMARY
         if: steps.status.outputs.dirty == 'true'

azure-pipelines.yml

@@ -114,7 +114,7 @@ stages:
           - bash: |
               set -e
               python -m pip install --progress-bar off --upgrade pip
-              python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git" "git+https://github.com/python-quantities/python-quantities" pyvista scikit-learn python-picard qtpy nibabel sphinx-gallery "PySide6!=6.8.0,!=6.8.0.1,!=6.8.1.1,!=6.9.1" pandas neo pymatreader antio defusedxml curryreader
+              python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git" "git+https://github.com/python-quantities/python-quantities" pyvista scikit-learn python-picard qtpy nibabel sphinx-gallery "PySide6!=6.8.0,!=6.8.0.1,!=6.8.1.1,!=6.9.1" pandas neo pymatreader antio defusedxml curryreader pymef
               python -m pip uninstall -yq mne
               python -m pip install --progress-bar off --upgrade -e . --group=test
             displayName: 'Install dependencies with pip'

doc/_includes/data_formats.rst

@@ -77,6 +77,9 @@ NIRS          :ref:`NIRx <import-nirx>`                     directory  :func:`mn
 NIRS          :ref:`BOXY <import-boxy>`                     directory  :func:`mne.io.read_raw_boxy`
 
 EYETRACK      SR eyelink ASCII files                        .asc       :func:`mne.io.read_raw_eyelink`
+
+iEEG          MEF3                                          .mefd      :func:`mne.io.read_raw_mef`
+
 ============  ============================================  =========  ===================================
 
 More details are provided in the tutorials in the :ref:`tut-data-formats`

doc/api/preprocessing.rst

@@ -49,6 +49,7 @@ Projections:
    read_dig_localite
    make_standard_montage
    read_custom_montage
+   read_meg_canonical_info
    transform_to_head
    compute_dev_head_t
    read_layout

doc/api/reading_raw_data.rst

@@ -34,6 +34,7 @@ Reading raw data
    read_raw_gdf
    read_raw_hitachi
    read_raw_kit
+   read_raw_mef
    read_raw_nedf
    read_raw_nicolet
    read_raw_nihon

doc/changes/dev/13196.newfeature.rst

@@ -0,0 +1 @@
+Add support for :meth:`mne.io.Raw.interpolate_to` and related methods (and :func:`mne.channels.read_meg_canonical_info`) for interpolating MEG data across systems, by :newcontrib:`Konstantinos Tsilimparis`.

doc/changes/dev/13610.newfeature.rst

@@ -0,0 +1 @@
+Add :func:`mne.io.read_raw_mef` for reading MEF3 files, supporting BIDS iEEG data formats, by `Bruno Aristimunha`_.

doc/changes/dev/13625.dependency.rst

@@ -0,0 +1,5 @@
+Updated minimum for:
+
+- Optional dependency ``pyobjc-framework-Cocoa >= 5.2.0; platform_system == "Darwin"``
+
+Changes implemented via CI action created by `Thomas Binns`_.

doc/changes/dev/13628.bugfix.rst

@@ -0,0 +1 @@
+Fix :func:`mne.io.read_raw_snirf` raising ``TypeError`` when ``landmarkLabels`` is empty or scalar, by `Bruno Aristimunha`_.

doc/changes/dev/13630.bugfix.rst

@@ -0,0 +1 @@
+Fix bug with :func:`mne.datasets.somato.data_path` where the archive couldn't be extracted due to an absolute path issue, by `Eric Larson`_.